Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013974

Physical Location & Seq

Genomic Coordinates Reverse (-)

39335671 .. 39337069

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0229200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCATGTGCACTCAATTGCAAAAACTAAGACAAGGCCGCAACTTACCAGCACTATAGTGGACACCTCTGGTGCAATGAAAGCCAAGGAAGTTGCGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCCTTTATTGTGCCTTGCAACTTTGTAGTGCTTTCGTTGTCCATTGCCAGTGCAGGGTTGTCACCCCAGAGATCATTCGTCATGGCATTTGTGGAGGTGGTTGCTGTTGGTGTAATACAGATATATAGCTGCTCTGGGATTTTAGTGAAATTAATTGGTATACAAGTATACACAAGTTTCATGGACAAAACAAAAGTTTTAGACACAGGGAAGCCGAATTATATCTTTGAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0080116 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

120

Amino Acids

12.94

Weight (kDa)

9.65

Isoelectric Point (pI)

16.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27440
fragaria_vesca	FvH4_4g22570
malus_domestica	MD13G1131300.v1.1 MD16G1141600.v1.1
prunus_persica	Prupe.1G214300_v2.0.a1
pyrus_communis	pycom13g11460 pycom16g11210
rosa_chinensis	RchiOBHm_Chr4g0428811
rosa_laevigata	RLG00000007123
rosa_multiflora	Rmu_sc0009525.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370490
rosa_rugosa	Rorug04G0229200
rosa_samantha	Rh4AG286100 Rh4BG291900 Rh4CG307900 Rh4DG289100
rosa_wichuraiana	Rw4G024800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	286, 294
AciI	CCGC	1 cut(s)	38
AclI	AACGTT	1 cut(s)	358
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	356
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	2 cut(s)	104, 255
AluI	AGCT	2 cut(s)	104, 255
Alw21I	GWGCWC	1 cut(s)	12
Alw44I	GTGCAC	1 cut(s)	8
AoxI	GGCC	1 cut(s)	35
ApaLI	GTGCAC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	255
AseI	ATTAAT	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	2 cut(s)	38, 256
BlsI	GCNGC	2 cut(s)	39, 257
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	174
Bse3DI	GCAATG	2 cut(s)	81, 168
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMI	GCAATG	2 cut(s)	81, 168
BseNI	ACTGG	1 cut(s)	174
BseSI	GKGCMC	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	180
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	197
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	81, 168
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	197
BssNAI	GTATAC	2 cut(s)	287, 295
BssT1I	CCWWGG	1 cut(s)	84
Bst1107I	GTATAC	2 cut(s)	287, 295
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	200
BstMBI	GATC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 101
BstNSI	RCATGY	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	242
BstZ17I	GTATAC	2 cut(s)	287, 295
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	181
CviAII	CATG	3 cut(s)	5, 208, 307
CviJI	RGCY	5 cut(s)	37, 83, 104, 255, 340
CviKI_1	RGCY	5 cut(s)	37, 83, 104, 255, 340
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	3 cut(s)	8, 211, 310
FaiI	YATR	9 cut(s)	6, 56, 209, 250, 252, 287, 295, 308, 348
FatI	CATG	3 cut(s)	4, 207, 306
FblI	GTMKAC	2 cut(s)	286, 294
Fnu4HI	GCNGC	2 cut(s)	38, 256
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	38, 256
GluI	GCNGC	2 cut(s)	38, 256
HaeIII	GGCC	1 cut(s)	37
Hin1II	CATG	3 cut(s)	8, 211, 310
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	1 cut(s)	114
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	4 cut(s)	10, 61, 287, 295
Hpy8I	GTNNAC	4 cut(s)	10, 61, 287, 295
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	6 cut(s)	4, 10, 20, 74, 144, 179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 101
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	3 cut(s)	8, 211, 310
Kzo9I	GATC	1 cut(s)	197
LpnPI	CCDG	7 cut(s)	54, 61, 165, 187, 206, 246, 318
Lsp1109I	GCAGC	1 cut(s)	242
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MboII	GAAGA	1 cut(s)	109
MfeI	CAATTG	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	4 cut(s)	15, 275, 279, 343
MnlI	CCTC	2 cut(s)	76, 214
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	278
MslI	CAYNNNNRTG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	80, 101
NdeII	GATC	1 cut(s)	197
NlaIII	CATG	3 cut(s)	8, 211, 310
NmuCI	GTSAC	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
OliI	CACNNNNGTG	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	39, 257
PshBI	ATTAAT	1 cut(s)	278
Psp1406I	AACGTT	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	2 cut(s)	38, 256
Sau3AI	GATC	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	5 cut(s)	68, 106, 225, 257, 361
SfcI	CTRYAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	4 cut(s)	15, 275, 279, 343
SsiI	CCGC	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	84
TaiI	ACGT	1 cut(s)	361
TasI	AATT	4 cut(s)	15, 275, 279, 343
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	92, 295
TspRI	CASTG	1 cut(s)	181
VneI	GTGCAC	1 cut(s)	8
VspI	ATTAAT	1 cut(s)	278
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XmiI	GTMKAC	2 cut(s)	286, 294
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.