Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0013974

Physical Location & Seq

Genomic Coordinates Reverse (-)

56969352 .. 56971847

Gene Structure 2496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG307900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGAGAATGGGAATGTGGGTGCTTGCTCTTCTTTGTGTTTATGGGTTTGCTTGGGGAGTTGGTGCTGATAAGAATGTAAGAACCGAGAGAATTTCAGGAAGTGCTGGTGATGTGTTAGAGGATAATCCAGTTGGGAGGTTGAAAGTTTATGTGTATGAGCTGCCTAGCAAATACAACAAGAAACTCCTTCAAAAAGAGCCAAGATGTCTCAACCATATGTTTGCTGCTGAGATCTTTATGCATAGGTTCCTCTTATCAAGCGCGGTTAGAACCCACAATCCGAACGAAGCAGATTGGTTCTATACTCCCATATACACAACTTGTGACCTTACCCCTACTGGCTTGCCATTGCCCTTCAAATCACCACGGATGATGAGAAGTGCAGTGCAGCTCATATCTAGGAACTGGCCTTATTGGAATCGAACAGAGGGAGCTGATCACTTCTTTGTTGTGCCCCATGACTTTGGAGCCTGCTTCCATTACCAGGAAGAGAAAGCTATTGACAGGGGGATTCTTCCATTACTTCAGCGTGCAACATTGGTTCAAACCTTTGGACAGCGGAACCATGTATGTTTGAAAGAGGGTTCAATCACAATTCCTCCCTATGCTCCACCGCAAAAGATGCAGACCCACCTGATTCCCCAGGAAACTCCAAGGTCCATCTTTGTCTACTTTCGTGGCCTGTTTTATGACATTAATAATGATCCTGAAGGTGGTTACTATGCAAGAGGTGCAAGGGCAGCTGTTTGGGAGAATTTCAAGAACAACCCTCTCTTTGACATCTCAACTGACCACCCAACAACATATTATGAAGACATGCAACGATCGATATTCTGTTTATGCCCTCTTGGATGGGCTCCATGGAGTCCGAGGCTGGTTGAAGCAGTGGTATTCGGTTGCATTCCTGTTATTATAGCCGATGACATTGTGTTACCCTTTGCTGATGCCATCCCATGGGAAGAAATCGGAGTATTTGTAGCCGAGGAGGATGTCCCTAACTTGGATACAATTCTCACTTCTATTCCACCAGAAGTGATTTTAAGGAAACAAAGATTGCTTGCAAATCCTTCGATGAAATGGGCCATGATGTTCCCACAGCCGGCACAACCAGGGGATGCTTTCCACCAGATACTTAACGGGCTGGCTCGGAAACTACCCCATGGCAAGAGTGTTTACTTAAAGGCTGATCAAAAGATTTTGAACTGGACAGCAGGTCCAGTGGGAGACTTGAAACCTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0015020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0080116 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

413

Amino Acids

47.11

Weight (kDa)

7.15

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exostosin_GT47	PF03016	46 - 341	1.7e-78	Exostosin GT47 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27440
fragaria_vesca	FvH4_4g22570
malus_domestica	MD13G1131300.v1.1 MD16G1141600.v1.1
prunus_persica	Prupe.1G214300_v2.0.a1
pyrus_communis	pycom13g11460 pycom16g11210
rosa_chinensis	RchiOBHm_Chr4g0428811
rosa_laevigata	RLG00000007123
rosa_multiflora	Rmu_sc0009525.1_g000001
rosa_roxburghii	Rroxscaffold_5G00370490
rosa_rugosa	Rorug04G0229200
rosa_samantha	Rh4AG286100 Rh4BG291900 Rh4CG307900 Rh4DG289100
rosa_wichuraiana	Rw4G024800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1202
AccB7I	CCANNNNNTGG	1 cut(s)	954
AccI	GTMKAC	1 cut(s)	669
AccII	CGCG	1 cut(s)	263
AciI	CCGC	3 cut(s)	263, 559, 614
AclWI	GGATC	1 cut(s)	698
AcsI	RAATTY	2 cut(s)	90, 754
AcuI	CTGAAG	2 cut(s)	509, 729
AfiI	CCNNNNNNNGG	5 cut(s)	484, 713, 954, 1000, 1099
AhdI	GACNNNNNGTC	1 cut(s)	1212
AjnI	CCWGG	3 cut(s)	483, 642, 1108
AloI	GAACNNNNNNTCC	2 cut(s)	262, 294
AluBI	AGCT	5 cut(s)	160, 391, 434, 497, 743
AluI	AGCT	5 cut(s)	160, 391, 434, 497, 743
Alw26I	GTCTC	2 cut(s)	212, 1218
AlwI	GGATC	1 cut(s)	698
AoxI	GGCC	3 cut(s)	407, 679, 1080
ApeKI	GCWGC	4 cut(s)	160, 224, 388, 740
ApoI	RAATTY	2 cut(s)	90, 754
AseI	ATTAAT	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	3 cut(s)	657, 1080, 1214
AsuHPI	GGTGA	2 cut(s)	119, 354
AvaII	GGWCC	2 cut(s)	657, 1214
BaeGI	GKGCMC	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	859
BbsI	GAAGAC	1 cut(s)	819
BbvI	GCAGC	4 cut(s)	147, 211, 400, 752
BccI	CCATC	3 cut(s)	668, 846, 956
BcgI	CGANNNNNNTGC	2 cut(s)	1050, 1084
BciT130I	CCWGG	3 cut(s)	485, 644, 1110
BciVI	GTATCC	1 cut(s)	997
BclI	TGATCA	2 cut(s)	436, 1186
BcoDI	GTCTC	2 cut(s)	212, 1218
BfaI	CTAG	2 cut(s)	165, 399
BfuAI	ACCTGC	1 cut(s)	1202
BfuI	GTATCC	1 cut(s)	997
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	4 cut(s)	161, 225, 389, 741
BlsI	GCNGC	4 cut(s)	162, 226, 390, 742
Bme1390I	CCNGG	3 cut(s)	485, 644, 1110
Bme18I	GGWCC	2 cut(s)	657, 1214
BmeRI	GACNNNNNGTC	1 cut(s)	1212
BmgT120I	GGNCC	3 cut(s)	657, 1080, 1214
BmiI	GGNNCC	4 cut(s)	248, 469, 563, 858
BmrFI	CCNGG	3 cut(s)	485, 644, 1110
BmsI	GCATC	3 cut(s)	612, 934, 1105
BpiI	GAAGAC	1 cut(s)	819
Bsa29I	ATCGAT	1 cut(s)	827
BsaXI	ACNNNNNCTCC	4 cut(s)	583, 613, 960, 990
Bsc4I	CCNNNNNNNGG	5 cut(s)	484, 713, 954, 1000, 1099
Bse118I	RCCGGY	1 cut(s)	1099
Bse1I	ACTGG	5 cut(s)	128, 343, 410, 1208, 1217
Bse3DI	GCAATG	1 cut(s)	347
BseBI	CCWGG	3 cut(s)	485, 644, 1110
BseCI	ATCGAT	1 cut(s)	827
BseGI	GGATG	5 cut(s)	375, 857, 948, 994, 1120
BseLI	CCNNNNNNNGG	5 cut(s)	484, 713, 954, 1000, 1099
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	5 cut(s)	128, 343, 410, 1208, 1217
BseRI	GAGGAG	1 cut(s)	998
BseSI	GKGCMC	1 cut(s)	456
BseXI	GCAGC	4 cut(s)	147, 211, 400, 752
BsgI	GTGCAG	2 cut(s)	402, 407
Bsh1236I	CGCG	1 cut(s)	263
Bsh1285I	CGRYCG	1 cut(s)	827
BshFI	GGCC	3 cut(s)	409, 681, 1082
BshVI	ATCGAT	1 cut(s)	827
BsiEI	CGRYCG	1 cut(s)	827
BsiSI	CCGG	1 cut(s)	1100
BslFI	GGGAC	1 cut(s)	977
BslI	CCNNNNNNNGG	5 cut(s)	484, 713, 954, 1000, 1099
BsmAI	GTCTC	2 cut(s)	212, 1218
BsmFI	GGGAC	1 cut(s)	977
BsmI	GAATGC	1 cut(s)	900
BsnI	GGCC	3 cut(s)	409, 681, 1082
Bsp1286I	GDGCHC	2 cut(s)	456, 859
Bsp143I	GATC	5 cut(s)	231, 436, 703, 824, 1186
Bsp19I	CCATGG	3 cut(s)	860, 953, 1159
BspACI	CCGC	3 cut(s)	263, 559, 614
BspANI	GGCC	3 cut(s)	409, 681, 1082
BspCNI	CTCAG	1 cut(s)	220
BspDI	ATCGAT	1 cut(s)	827
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	4 cut(s)	248, 469, 563, 858
BspMI	ACCTGC	1 cut(s)	1202
BspPI	GGATC	1 cut(s)	698
BspQI	GCTCTTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	347
BsrFI	RCCGGY	1 cut(s)	1099
BsrI	ACTGG	5 cut(s)	128, 343, 410, 1208, 1217
BssAI	RCCGGY	1 cut(s)	1099
BssMI	GATC	5 cut(s)	231, 436, 703, 824, 1186
BssT1I	CCWWGG	5 cut(s)	653, 860, 953, 1159, 1235
Bst2UI	CCWGG	3 cut(s)	485, 644, 1110
Bst6I	CTCTTC	2 cut(s)	33, 483
BstAPI	GCANNNNNTGC	2 cut(s)	622, 731
BstC8I	GCNNGC	7 cut(s)	24, 344, 472, 531, 1059, 1101, 1143
BstDEI	CTNAG	1 cut(s)	228
BstDSI	CCRYGG	4 cut(s)	365, 860, 953, 1159
BstF5I	GGATG	5 cut(s)	375, 857, 948, 994, 1120
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	5 cut(s)	234, 439, 706, 827, 1189
BstMAI	GTCTC	2 cut(s)	212, 1218
BstMBI	GATC	5 cut(s)	231, 436, 703, 824, 1186
BstMCI	CGRYCG	1 cut(s)	827
BstMWI	GCNNNNNNNGC	3 cut(s)	622, 731, 740
BstNI	CCWGG	3 cut(s)	485, 644, 1110
BstNSI	RCATGY	1 cut(s)	820
BstSCI	CCNGG	3 cut(s)	483, 642, 1108
BstSLI	GKGCMC	1 cut(s)	456
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	4 cut(s)	147, 211, 400, 752
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	1 cut(s)	231
BstXI	CCANNNNNNTGG	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	231
Bsu15I	ATCGAT	1 cut(s)	827
BsuI	GTATCC	1 cut(s)	997
BsuRI	GGCC	3 cut(s)	409, 681, 1082
BsuTUI	ATCGAT	1 cut(s)	827
BtgI	CCRYGG	4 cut(s)	365, 860, 953, 1159
BtsCI	GGATG	5 cut(s)	375, 857, 948, 994, 1120
BtsI	GCAGTG	2 cut(s)	390, 891
BtsIMutI	CAGTG	3 cut(s)	390, 891, 1224
BveI	ACCTGC	1 cut(s)	1202
Cac8I	GCNNGC	7 cut(s)	24, 344, 472, 531, 1059, 1101, 1143
CfoI	GCGC	1 cut(s)	263
Cfr10I	RCCGGY	1 cut(s)	1099
Cfr13I	GGNCC	3 cut(s)	657, 1080, 1214
ClaI	ATCGAT	1 cut(s)	827
CviAII	CATG	7 cut(s)	458, 566, 817, 861, 954, 1084, 1160
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	5 cut(s)	233, 438, 705, 826, 1188
DpnII	GATC	5 cut(s)	231, 436, 703, 824, 1186
DriI	GACNNNNNGTC	1 cut(s)	1212
Eam1104I	CTCTTC	2 cut(s)	33, 483
Eam1105I	GACNNNNNGTC	1 cut(s)	1212
EarI	CTCTTC	2 cut(s)	33, 483
Eco130I	CCWWGG	5 cut(s)	653, 860, 953, 1159, 1235
Eco24I	GRGCYC	1 cut(s)	859
Eco47I	GGWCC	2 cut(s)	657, 1214
Eco57I	CTGAAG	2 cut(s)	509, 729
EcoRII	CCWGG	3 cut(s)	483, 642, 1108
EcoT14I	CCWWGG	5 cut(s)	653, 860, 953, 1159, 1235
EcoT22I	ATGCAT	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	859
ErhI	CCWWGG	5 cut(s)	653, 860, 953, 1159, 1235
FaeI	CATG	7 cut(s)	461, 569, 820, 864, 957, 1087, 1163
FaqI	GGGAC	1 cut(s)	977
FatI	CATG	7 cut(s)	457, 565, 816, 860, 953, 1083, 1159
FauNDI	CATATG	1 cut(s)	216
FbaI	TGATCA	2 cut(s)	436, 1186
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	4 cut(s)	161, 225, 389, 741
FokI	GGATG	5 cut(s)	382, 864, 935, 1001, 1127
FriOI	GRGCYC	1 cut(s)	859
Fsp4HI	GCNGC	4 cut(s)	161, 225, 389, 741
FspBI	CTAG	2 cut(s)	165, 399
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	4 cut(s)	161, 225, 389, 741
HaeIII	GGCC	3 cut(s)	409, 681, 1082
HapII	CCGG	1 cut(s)	1100
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	7 cut(s)	461, 569, 820, 864, 957, 1087, 1163
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	4 cut(s)	418, 511, 637, 865
HpaII	CCGG	1 cut(s)	1100
HphI	GGTGA	2 cut(s)	119, 354
Hpy166II	GTNNAC	2 cut(s)	670, 1174
Hpy188I	TCNGA	4 cut(s)	282, 870, 968, 1149
Hpy188III	TCNNGA	3 cut(s)	96, 707, 760
Hpy8I	GTNNAC	2 cut(s)	670, 1174
HpyAV	CCTTC	4 cut(s)	197, 364, 704, 1077
HpyF10VI	GCNNNNNNNGC	3 cut(s)	622, 731, 740
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	7 cut(s)	461, 569, 820, 864, 957, 1087, 1163
HspAI	GCGC	1 cut(s)	261
KroI	GCCGGC	1 cut(s)	1099
KroNI	GCCGGC	1 cut(s)	1101
Ksp22I	TGATCA	2 cut(s)	436, 1186
Kzo9I	GATC	5 cut(s)	231, 436, 703, 824, 1186
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	4 cut(s)	431, 467, 613, 862
Lsp1109I	GCAGC	4 cut(s)	147, 211, 400, 752
LweI	GCATC	3 cut(s)	612, 934, 1105
MaeI	CTAG	2 cut(s)	165, 399
MaeIII	GTNAC	3 cut(s)	323, 716, 930
MalI	GATC	5 cut(s)	233, 438, 705, 826, 1188
MboI	GATC	5 cut(s)	231, 436, 703, 824, 1186
MboII	GAAGA	5 cut(s)	20, 500, 506, 824, 971
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	456, 859
MluCI	AATT	4 cut(s)	90, 594, 754, 1008
MlyI	GAGTC	1 cut(s)	874
Mph1103I	ATGCAT	1 cut(s)	243
MroNI	GCCGGC	1 cut(s)	1099
MseI	TTAA	4 cut(s)	696, 1040, 1134, 1178
MspA1I	CMGCKG	2 cut(s)	559, 743
MspI	CCGG	1 cut(s)	1100
MspR9I	CCNGG	3 cut(s)	485, 644, 1110
Mva1269I	GAATGC	1 cut(s)	900
MvaI	CCWGG	3 cut(s)	485, 644, 1110
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	622, 731, 740
NaeI	GCCGGC	1 cut(s)	1101
NcoI	CCATGG	3 cut(s)	860, 953, 1159
NdeI	CATATG	1 cut(s)	216
NdeII	GATC	5 cut(s)	231, 436, 703, 824, 1186
NgoMIV	GCCGGC	1 cut(s)	1099
NlaIII	CATG	7 cut(s)	461, 569, 820, 864, 957, 1087, 1163
NlaIV	GGNNCC	4 cut(s)	248, 469, 563, 858
NmeAIII	GCCGAG	1 cut(s)	1006
NmuCI	GTSAC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	243
NspI	RCATGY	1 cut(s)	820
PciSI	GCTCTTC	1 cut(s)	33
PctI	GAATGC	1 cut(s)	900
PdiI	GCCGGC	1 cut(s)	1101
PfeI	GAWTC	3 cut(s)	418, 511, 637
PflMI	CCANNNNNTGG	1 cut(s)	954
PkrI	GCNGC	4 cut(s)	162, 226, 390, 742
Ple19I	CGATCG	1 cut(s)	827
PleI	GAGTC	1 cut(s)	873
PpsI	GAGTC	1 cut(s)	873
PshBI	ATTAAT	1 cut(s)	696
Psp6I	CCWGG	3 cut(s)	483, 642, 1108
PspGI	CCWGG	3 cut(s)	483, 642, 1108
PspN4I	GGNNCC	4 cut(s)	248, 469, 563, 858
PspPI	GGNCC	3 cut(s)	657, 1080, 1214
PsuI	RGATCY	1 cut(s)	231
PvuI	CGATCG	1 cut(s)	827
PvuII	CAGCTG	1 cut(s)	743
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	4 cut(s)	696, 1040, 1134, 1178
SatI	GCNGC	4 cut(s)	161, 225, 389, 741
Sau3AI	GATC	5 cut(s)	231, 436, 703, 824, 1186
Sau96I	GGNCC	3 cut(s)	657, 1080, 1214
SchI	GAGTC	1 cut(s)	874
ScrFI	CCNGG	3 cut(s)	485, 644, 1110
SduI	GDGCHC	2 cut(s)	456, 859
SfaNI	GCATC	3 cut(s)	612, 934, 1105
SinI	GGWCC	2 cut(s)	657, 1214
Sse9I	AATT	4 cut(s)	90, 594, 754, 1008
SsiI	CCGC	3 cut(s)	263, 559, 614
SspMI	CTAG	2 cut(s)	165, 399
StyD4I	CCNGG	3 cut(s)	483, 642, 1108
StyI	CCWWGG	5 cut(s)	653, 860, 953, 1159, 1235
TaqI	TCGA	3 cut(s)	421, 827, 1070
TasI	AATT	4 cut(s)	90, 594, 754, 1008
TfiI	GAWTC	3 cut(s)	418, 511, 637
Tru1I	TTAA	4 cut(s)	696, 1040, 1134, 1178
Tru9I	TTAA	4 cut(s)	696, 1040, 1134, 1178
TscAI	CASTG	3 cut(s)	390, 891, 1224
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	4 cut(s)	160, 224, 388, 740
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	825, 1088
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	3 cut(s)	390, 891, 1224
Van91I	CCANNNNNTGG	1 cut(s)	954
VpaK11BI	GGWCC	2 cut(s)	657, 1214
VspI	ATTAAT	1 cut(s)	696
XapI	RAATTY	2 cut(s)	90, 754
XceI	RCATGY	1 cut(s)	820
XmiI	GTMKAC	1 cut(s)	669
XspI	CTAG	2 cut(s)	165, 399
Zsp2I	ATGCAT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.