pycom13g11460

beta-1,4-xylosyltransferase IRX10

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
7872844 .. 7875092
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g11460.4

Sequence Viewer

Length: 1230 bp
ATGTGGGTTTTTGCTGTTCTTGTTGTTTGTGGTTTGGCTTGTGGAATCGGAGCTGATCAGAATGTACGAACGGAGCGGATTTCGGGAAGCGCTGGTGATGTCTTGGAGGATAATCCAGTTGGAAGGTTGAAGGTTTATGTGTATGAGCTACCTAGCAAATACAACAAGAAAATCCTTCAGAAAGACCCGAGATGTCTCAACCATATGTTCGCTGCTGAGATCTACATGCATCGGTTCCTCTTATCCAGCCCGGTTAGAACCCTTAATCCGGAGGAAGCAGATTGGTTTTATACTCCTATCTACCCTACTTGTGACCTTACCCCCACTGGCTTGCCATTGCCCTTCAAGTCACCGCGGATGATGAGAAGTGCAATACAGCTCATTTCTACAAACTGGCCTTATTGGAATCAAACAGAAGGAGCCAATCACTTCTTTGTTGTTCCCCATGACTTTGGAGCCTGCTTTCATTACCAGGAAGAGAAAGCCATTGAACGGGGGATTCTTCCATTACTCCAGCGTGCCACCTTGGTTCAGACGTTTGGACAACGGAACCACGTATGTTTGAAGGACGGTTCAATCACAATTCCTCCATATGCTCCACCACAGAAGATGCAGGCACACCTGATTCCCAAACAAACTCCACGGTCCATCTTTGTCTACTTCCGCGGTCTATTTTATGACATTAATAATGACCCTGAAGGTGGTTACTATGCAAGAGGTGCAAGGGCAGCTGTTTGGGAAAATTTCAAGAACAATCCACTCTTTGACATCTCCACGGACCATCCAACTACATATTACGAAGATATGCAACGATCTATATTCTGTTTATGTCCTCTAGGTTGGGCCCCTTGGAGTCCAAGGCTAGTTGAAGCAGTGGTATTTGGCTGCATCCCTGTTATTATAGCCGACGACATTGTTCTACCCTTCGCTGATGCTATCCCGTGGGAAGAAATCGGCGTTTTTGTAGCTGAGGAAGATGTCCCTGACCTGGACACAATCCTCACTTCTATTCCACCGGAAGTAATCCTAAGGAAACAAAGATTGCTCGCGAATCCTTCGATGAAATGGGCGATGATGTTCCCACAACCTGCGCAACCAGGGGATGCATTCCATCAGATACTAAACGGGCTGGCACGCAAACTGCCCCATGATCAAAGTGTTTACATGAAGGCTGATGAAAAGGTTTTGAACTGGACAGCAGGTCCGGTGGGAGACCTGAAACCTTGGTAA

Protein Analysis

410

Amino Acids

46.47

Weight (kDa)

5.95

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27440
fragaria_vesca FvH4_4g22570
malus_domestica MD13G1131300.v1.1 MD16G1141600.v1.1
prunus_persica Prupe.1G214300_v2.0.a1
pyrus_communis pycom13g11460 pycom16g11210
rosa_chinensis RchiOBHm_Chr4g0428811
rosa_laevigata RLG00000007123
rosa_multiflora Rmu_sc0009525.1_g000001
rosa_roxburghii Rroxscaffold_5G00370490
rosa_rugosa Rorug04G0229200
rosa_samantha Rh4AG286100 Rh4BG291900 Rh4CG307900 Rh4DG289100
rosa_wichuraiana Rw4G024800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1092
Acc36I ACCTGC 2 cut(s) 1096, 1190
AccBSI CCGCTC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 657
AccII CGCG 3 cut(s) 355, 666, 1049
AccIII TCCGGA 1 cut(s) 268
AciI CCGC 5 cut(s) 76, 353, 355, 664, 666
AcsI RAATTY 1 cut(s) 742
AcuI CTGAAG 2 cut(s) 161, 717
AfaI GTAC 1 cut(s) 66
AfeI AGCGCT 1 cut(s) 91
AfiI CCNNNNNNNGG 4 cut(s) 268, 492, 701, 988
AgsI TTSAA 8 cut(s) 130, 346, 491, 565, 576, 748, 869, 1189
AhdI GACNNNNNGTC 1 cut(s) 1200
AjnI CCWGG 3 cut(s) 471, 987, 1096
AloI GAACNNNNNNTCC 2 cut(s) 250, 282
AluBI AGCT 5 cut(s) 53, 148, 379, 731, 968
AluI AGCT 5 cut(s) 53, 148, 379, 731, 968
Alw26I GTCTC 2 cut(s) 200, 1206
Ama87I CYCGRG 1 cut(s) 187
Aor13HI TCCGGA 1 cut(s) 268
Aor51HI AGCGCT 1 cut(s) 91
AoxI GGCC 2 cut(s) 395, 843
ApaI GGGCCC 1 cut(s) 847
ApeKI GCWGC 3 cut(s) 212, 728, 885
ApoI RAATTY 1 cut(s) 742
AseI ATTAAT 1 cut(s) 684
AspLEI GCGC 2 cut(s) 92, 1093
AspS9I GGNCC 5 cut(s) 645, 778, 843, 844, 1202
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 2 cut(s) 107, 342
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 3 cut(s) 645, 778, 1202
AxyI CCTNAGG 1 cut(s) 1028
BaeGI GKGCMC 1 cut(s) 847
BanII GRGCYC 1 cut(s) 847
BbvCI CCTCAGC 1 cut(s) 969
BbvI GCAGC 3 cut(s) 199, 740, 872
BccI CCATC 3 cut(s) 656, 789, 1119
BciT130I CCWGG 3 cut(s) 473, 989, 1098
BclI TGATCA 2 cut(s) 55, 1150
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 200, 1206
BfaI CTAG 3 cut(s) 153, 836, 863
BfoI RGCGCY 1 cut(s) 93
BfuAI ACCTGC 2 cut(s) 1096, 1190
BglII AGATCT 1 cut(s) 219
BisI GCNGC 3 cut(s) 213, 729, 886
BlsI GCNGC 3 cut(s) 214, 730, 887
Bme1390I CCNGG 4 cut(s) 251, 473, 989, 1098
Bme18I GGWCC 3 cut(s) 645, 778, 1202
BmeRI GACNNNNNGTC 1 cut(s) 1200
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 5 cut(s) 645, 778, 843, 844, 1202
BmiI GGNNCC 6 cut(s) 236, 421, 457, 551, 845, 846
BmrFI CCNGG 4 cut(s) 251, 473, 989, 1098
BmsI GCATC 5 cut(s) 238, 600, 897, 922, 1093
BpmI CTGGAG 1 cut(s) 497
Bpu10I CCTNAGC 1 cut(s) 969
BpuMI CCSGG 1 cut(s) 251
BsaAI YACGTR 1 cut(s) 556
BsaI GGTCTC 1 cut(s) 1206
BsaWI WCCGGW 3 cut(s) 268, 1015, 1204
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bsc4I CCNNNNNNNGG 4 cut(s) 268, 492, 701, 988
Bse1I ACTGG 4 cut(s) 116, 331, 398, 1196
Bse21I CCTNAGG 1 cut(s) 1028
Bse3DI GCAATG 1 cut(s) 335
BseAI TCCGGA 1 cut(s) 268
BseBI CCWGG 3 cut(s) 473, 989, 1098
BseGI GGATG 4 cut(s) 363, 781, 888, 1108
BseLI CCNNNNNNNGG 4 cut(s) 268, 492, 701, 988
BseMI GCAATG 1 cut(s) 335
BseMII CTCAG 2 cut(s) 207, 960
BseNI ACTGG 4 cut(s) 116, 331, 398, 1196
BseSI GKGCMC 1 cut(s) 847
BseXI GCAGC 3 cut(s) 199, 740, 872
Bsh1236I CGCG 3 cut(s) 355, 666, 1049
BshFI GGCC 2 cut(s) 397, 845
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 4 cut(s) 251, 269, 1016, 1205
BslFI GGGAC 1 cut(s) 965
BslI CCNNNNNNNGG 4 cut(s) 268, 492, 701, 988
BsmAI GTCTC 2 cut(s) 200, 1206
BsmFI GGGAC 1 cut(s) 965
BsmI GAATGC 1 cut(s) 1106
BsnI GGCC 2 cut(s) 397, 845
Bso31I GGTCTC 1 cut(s) 1206
BsoBI CYCGRG 1 cut(s) 187
Bsp120I GGGCCC 1 cut(s) 843
Bsp1286I GDGCHC 1 cut(s) 847
Bsp13I TCCGGA 1 cut(s) 268
Bsp143I GATC 4 cut(s) 55, 219, 812, 1150
Bsp68I TCGCGA 1 cut(s) 1049
BspACI CCGC 5 cut(s) 76, 353, 355, 664, 666
BspANI GGCC 2 cut(s) 397, 845
BspCNI CTCAG 2 cut(s) 208, 961
BspEI TCCGGA 1 cut(s) 268
BspFNI CGCG 3 cut(s) 355, 666, 1049
BspLI GGNNCC 6 cut(s) 236, 421, 457, 551, 845, 846
BspMI ACCTGC 2 cut(s) 1096, 1190
BspTNI GGTCTC 1 cut(s) 1206
BsrBI CCGCTC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 335
BsrI ACTGG 4 cut(s) 116, 331, 398, 1196
BssMI GATC 4 cut(s) 55, 219, 812, 1150
BssT1I CCWWGG 4 cut(s) 525, 848, 857, 1223
Bst2UI CCWGG 3 cut(s) 473, 989, 1098
Bst4CI ACNGT 2 cut(s) 572, 645
Bst6I CTCTTC 1 cut(s) 471
BstAPI GCANNNNNTGC 1 cut(s) 719
BstBAI YACGTR 1 cut(s) 556
BstC8I GCNNGC 7 cut(s) 332, 460, 519, 615, 1047, 1131, 1135
BstDEI CTNAG 3 cut(s) 216, 969, 1028
BstDSI CCRYGG 5 cut(s) 353, 641, 664, 774, 941
BstF5I GGATG 4 cut(s) 363, 781, 888, 1108
BstFNI CGCG 3 cut(s) 355, 666, 1049
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 2 cut(s) 92, 1093
BstKTI GATC 4 cut(s) 58, 222, 815, 1153
BstMAI GTCTC 2 cut(s) 200, 1206
BstMBI GATC 4 cut(s) 55, 219, 812, 1150
BstMWI GCNNNNNNNGC 2 cut(s) 719, 728
BstNI CCWGG 3 cut(s) 473, 989, 1098
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 4 cut(s) 249, 471, 987, 1096
BstSLI GKGCMC 1 cut(s) 847
BstUI CGCG 3 cut(s) 355, 666, 1049
BstV1I GCAGC 3 cut(s) 199, 740, 872
BstX2I RGATCY 1 cut(s) 219
BstXI CCANNNNNNTGG 1 cut(s) 452
BstYI RGATCY 1 cut(s) 219
Bsu36I CCTNAGG 1 cut(s) 1028
BsuRI GGCC 2 cut(s) 397, 845
BtgI CCRYGG 5 cut(s) 353, 641, 664, 774, 941
BtgZI GCGATG 1 cut(s) 1085
BtsCI GGATG 4 cut(s) 363, 781, 888, 1108
BtsI GCAGTG 1 cut(s) 879
BtsIMutI CAGTG 2 cut(s) 324, 879
BtuMI TCGCGA 1 cut(s) 1049
BveI ACCTGC 2 cut(s) 1096, 1190
Cac8I GCNNGC 7 cut(s) 332, 460, 519, 615, 1047, 1131, 1135
CfoI GCGC 2 cut(s) 92, 1093
Cfr13I GGNCC 5 cut(s) 645, 778, 843, 844, 1202
Cfr42I CCGCGG 2 cut(s) 356, 667
Csp6I GTAC 1 cut(s) 65
CviAII CATG 4 cut(s) 226, 446, 1148, 1165
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 3 cut(s) 216, 969, 1028
DpnI GATC 4 cut(s) 57, 221, 814, 1152
DpnII GATC 4 cut(s) 55, 219, 812, 1150
DriI GACNNNNNGTC 1 cut(s) 1200
Eam1104I CTCTTC 1 cut(s) 471
Eam1105I GACNNNNNGTC 1 cut(s) 1200
EarI CTCTTC 1 cut(s) 471
Eco130I CCWWGG 4 cut(s) 525, 848, 857, 1223
Eco24I GRGCYC 1 cut(s) 847
Eco31I GGTCTC 1 cut(s) 1206
Eco47I GGWCC 3 cut(s) 645, 778, 1202
Eco47III AGCGCT 1 cut(s) 91
Eco57I CTGAAG 2 cut(s) 161, 717
Eco81I CCTNAGG 1 cut(s) 1028
Eco88I CYCGRG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 844
EcoRII CCWGG 3 cut(s) 471, 987, 1096
EcoT14I CCWWGG 4 cut(s) 525, 848, 857, 1223
EcoT22I ATGCAT 2 cut(s) 231, 1108
EcoT38I GRGCYC 1 cut(s) 847
ErhI CCWWGG 4 cut(s) 525, 848, 857, 1223
FaeI CATG 4 cut(s) 229, 449, 1151, 1168
FaqI GGGAC 1 cut(s) 965
FatI CATG 4 cut(s) 225, 445, 1147, 1164
FauNDI CATATG 2 cut(s) 204, 592
FbaI TGATCA 2 cut(s) 55, 1150
FblI GTMKAC 1 cut(s) 657
Fnu4HI GCNGC 3 cut(s) 213, 729, 886
FokI GGATG 4 cut(s) 370, 768, 875, 1115
FriOI GRGCYC 1 cut(s) 847
Fsp4HI GCNGC 3 cut(s) 213, 729, 886
FspBI CTAG 3 cut(s) 153, 836, 863
FspI TGCGCA 1 cut(s) 1092
GlaI GCGC 2 cut(s) 91, 1092
GluI GCNGC 3 cut(s) 213, 729, 886
GsuI CTGGAG 1 cut(s) 497
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 2 cut(s) 397, 845
HapII CCGG 4 cut(s) 251, 269, 1016, 1205
HhaI GCGC 2 cut(s) 92, 1093
Hin1II CATG 4 cut(s) 229, 449, 1151, 1168
Hin6I GCGC 2 cut(s) 90, 1091
HinP1I GCGC 2 cut(s) 90, 1091
HinfI GANTC 6 cut(s) 45, 406, 499, 625, 853, 1051
HpaII CCGG 4 cut(s) 251, 269, 1016, 1205
HphI GGTGA 2 cut(s) 107, 342
Hpy166II GTNNAC 2 cut(s) 658, 1162
Hpy188I TCNGA 5 cut(s) 50, 60, 180, 534, 1116
Hpy188III TCNNGA 4 cut(s) 84, 269, 748, 1048
Hpy8I GTNNAC 2 cut(s) 658, 1162
Hpy99I CGWCG 1 cut(s) 911
HpyCH4III ACNGT 2 cut(s) 572, 645
HpyCH4IV ACGT 2 cut(s) 536, 555
HpyCH4V TGCA 8 cut(s) 229, 371, 613, 713, 722, 808, 888, 1106
HpyF10VI GCNNNNNNNGC 2 cut(s) 719, 728
HpyF3I CTNAG 3 cut(s) 216, 969, 1028
HpySE526I ACGT 2 cut(s) 536, 555
Hsp92II CATG 4 cut(s) 229, 449, 1151, 1168
HspAI GCGC 2 cut(s) 90, 1091
Kpn2I TCCGGA 1 cut(s) 268
Ksp22I TGATCA 2 cut(s) 55, 1150
KspI CCGCGG 2 cut(s) 356, 667
Kzo9I GATC 4 cut(s) 55, 219, 812, 1150
LmnI GCTCC 5 cut(s) 50, 73, 419, 455, 601
Lsp1109I GCAGC 3 cut(s) 199, 740, 872
LweI GCATC 5 cut(s) 238, 600, 897, 922, 1093
MaeI CTAG 3 cut(s) 153, 836, 863
MaeII ACGT 2 cut(s) 536, 555
MaeIII GTNAC 3 cut(s) 311, 348, 704
MalI GATC 4 cut(s) 57, 221, 814, 1152
MbiI CCGCTC 1 cut(s) 76
MboI GATC 4 cut(s) 55, 219, 812, 1150
MboII GAAGA 6 cut(s) 488, 494, 619, 812, 959, 986
MflI RGATCY 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 847
MluCI AATT 2 cut(s) 582, 742
MlyI GAGTC 1 cut(s) 862
MmeI TCCRAC 2 cut(s) 100, 809
MnlI CCTC 8 cut(s) 100, 248, 265, 597, 710, 843, 964, 1010
Mph1103I ATGCAT 2 cut(s) 231, 1108
MroI TCCGGA 1 cut(s) 268
MseI TTAA 2 cut(s) 264, 684
MspA1I CMGCKG 3 cut(s) 355, 666, 731
MspI CCGG 4 cut(s) 251, 269, 1016, 1205
MspR9I CCNGG 4 cut(s) 251, 473, 989, 1098
Mva1269I GAATGC 1 cut(s) 1106
MvaI CCWGG 3 cut(s) 473, 989, 1098
MvnI CGCG 3 cut(s) 355, 666, 1049
MwoI GCNNNNNNNGC 2 cut(s) 719, 728
NciI CCSGG 1 cut(s) 251
NdeI CATATG 2 cut(s) 204, 592
NdeII GATC 4 cut(s) 55, 219, 812, 1150
NlaIII CATG 4 cut(s) 229, 449, 1151, 1168
NlaIV GGNNCC 6 cut(s) 236, 421, 457, 551, 845, 846
NmuCI GTSAC 2 cut(s) 311, 348
NruI TCGCGA 1 cut(s) 1049
NsbI TGCGCA 1 cut(s) 1092
NsiI ATGCAT 2 cut(s) 231, 1108
NspI RCATGY 1 cut(s) 229
PctI GAATGC 1 cut(s) 1106
PfeI GAWTC 5 cut(s) 45, 406, 499, 625, 1051
PkrI GCNGC 3 cut(s) 214, 730, 887
PleI GAGTC 1 cut(s) 861
PpsI GAGTC 1 cut(s) 861
Ppu21I YACGTR 1 cut(s) 556
PshBI ATTAAT 1 cut(s) 684
Psp6I CCWGG 3 cut(s) 471, 987, 1096
PspGI CCWGG 3 cut(s) 471, 987, 1096
PspN4I GGNNCC 6 cut(s) 236, 421, 457, 551, 845, 846
PspOMI GGGCCC 1 cut(s) 843
PspPI GGNCC 5 cut(s) 645, 778, 843, 844, 1202
PsuI RGATCY 1 cut(s) 219
PvuII CAGCTG 1 cut(s) 731
RruI TCGCGA 1 cut(s) 1049
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SacII CCGCGG 2 cut(s) 356, 667
SaqAI TTAA 2 cut(s) 264, 684
SatI GCNGC 3 cut(s) 213, 729, 886
Sau3AI GATC 4 cut(s) 55, 219, 812, 1150
Sau96I GGNCC 5 cut(s) 645, 778, 843, 844, 1202
SchI GAGTC 1 cut(s) 862
ScrFI CCNGG 4 cut(s) 251, 473, 989, 1098
SduI GDGCHC 1 cut(s) 847
SfaNI GCATC 5 cut(s) 238, 600, 897, 922, 1093
Sfr303I CCGCGG 2 cut(s) 356, 667
SgrBI CCGCGG 2 cut(s) 356, 667
SinI GGWCC 3 cut(s) 645, 778, 1202
Sse9I AATT 2 cut(s) 582, 742
SsiI CCGC 5 cut(s) 76, 353, 355, 664, 666
SspMI CTAG 3 cut(s) 153, 836, 863
StyD4I CCNGG 4 cut(s) 249, 471, 987, 1096
StyI CCWWGG 4 cut(s) 525, 848, 857, 1223
TaaI ACNGT 2 cut(s) 572, 645
TaiI ACGT 2 cut(s) 539, 558
TaqI TCGA 1 cut(s) 1058
TasI AATT 2 cut(s) 582, 742
TfiI GAWTC 5 cut(s) 45, 406, 499, 625, 1051
Tru1I TTAA 2 cut(s) 264, 684
Tru9I TTAA 2 cut(s) 264, 684
TscAI CASTG 2 cut(s) 331, 879
TseFI GTSAC 2 cut(s) 311, 348
TseI GCWGC 3 cut(s) 212, 728, 885
Tsp45I GTSAC 2 cut(s) 311, 348
TspDTI ATGAA 4 cut(s) 455, 1076, 1181, 1191
TspGWI ACGGA 3 cut(s) 86, 562, 791
TspRI CASTG 2 cut(s) 331, 879
VpaK11BI GGWCC 3 cut(s) 645, 778, 1202
VspI ATTAAT 1 cut(s) 684
XapI RAATTY 1 cut(s) 742
XceI RCATGY 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 657
XspI CTAG 3 cut(s) 153, 836, 863
Zsp2I ATGCAT 2 cut(s) 231, 1108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.