Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009920

Physical Location & Seq

Genomic Coordinates Reverse (-)

9603178 .. 9606247

Gene Structure 3070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCGTCAATCCGGCGAACTCTCTCGCCGATGTATCACGATCGTTCTCACGAGAATGGAGGTTCACACAAAGGTTTCACCATTGGTGGTAGTAGCAGCAAACACAATTCTTCGCAATTTCTTTCGTATCTCACCAAGCTCCTCGGAGTAACGTCTGATCCTAAAAGCTCGCGTAGAGGTCCATGGAGGCGACCGTTTTACCAGTTTCTCGTCTTCTTTCTTCTTGGATTTGTATTAGGTTTGACACCTTTCGGAAAAATGGAAGATGTAAACGGTTCCGATCGATTCTCCTTCGAGATCAAACAGCCCTACGTTGAAGAACGGTTGGAAAATAGGAAACGGGAAGAAGCAGCTGTAGATGCGGTGAGTTTCGTGGCGGAGACTGAAAATGGGAAGAAGGAGGTCAATTTTGTGCCGAAGAAGCTTCTAATTGTGGTCACACCAACGTATAATAGAGCGATGCAGGCGTATTACTTGAACAGGGTTGCTCAAACGCTGAGACTAGTTGAGTCGCCTGTGCTGTGGATAGTGGTGGAGGGTAACGTGGCGTCGTTTGAAACCTCAGAGATTCTGAGGAAGACGGGAGTGATGTACAGGCACTTGGTTTGCAAGAGGAACATGACGAGTATCAAGGATAGAGGAGTGCATCAGAGAAACACTGCATTGGAACATATTGAGTTGCATAAGCTTGATGGAATTGTCTACTTTGCTGATGATGACAATATCTACTCGCTTGAGCTCTTTCAAAGCTTGAGACAAATCAGCCGATTTGGGACTTGGCCTGTTGCTATGCTCGCACAAAGCAAAAACAAGGCCATCCTTGAAGGTCCAGTATGCAATGGAAGTCAAGTAATAGGATGGCACACTAATGAAAAGAGTAAAAGACTAAGGAGGTTCCATGTTGATATGTCGGGATTTGCTTTTAACAGCACTATACTCTGGGACCCTAAAAGGTGGCGACGTCCCTTTTCACATCCAACCCGCCAACTAGACACAGTGAAGGAGGGTTTCCAGGAGACATCATTTATAGAGCAGGTGGTGGCTGATGAAAGCGAGATGGAAGGTGTTCCACCAGCTTGCTCGAGTATACTGAACTGGCATCTTCACTTGGATGCCCTGGATGTCCCTTATCCACAAGGGTGGGCGATCCAAAAGAATCTGCAGGCTCTCATAACTATGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009832 GO:0009834 GO:0009987 GO:0010208 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0022607 GO:0030198 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0085029 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

394

Amino Acids

45.19

Weight (kDa)

9.32

Isoelectric Point (pI)

57.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_43	PF03360	162 - 370	1e-73	Glycosyltransferase family 43

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27600 AT1G27600
fragaria_vesca	FvH4_5g33700 FvH4_5g33700 FvH4_5g33700 FvH4_5g33700
malus_domestica	MD08G1209500.v1.1 MD15G1393400.v1.1
prunus_persica	Prupe.1G541800_v2.0.a1
pyrus_communis	pycom08g18080 pycom15g35370
rosa_chinensis	RchiOBHm_Chr7g0232711
rosa_laevigata	RLG00000001315
rosa_multiflora	Rmu_sc0002147.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227960
rosa_rugosa	Rorug07G0276000
rosa_samantha	Rh7AG430700 Rh7BG403800 Rh7CG449400 Rh7DG420300
rosa_wichuraiana	Rw7G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1024
AatII	GACGTC	1 cut(s)	964
Acc36I	ACCTGC	1 cut(s)	1024
AccI	GTMKAC	2 cut(s)	702, 1087
AccII	CGCG	1 cut(s)	172
AciI	CCGC	3 cut(s)	362, 377, 982
AclWI	GGATC	2 cut(s)	152, 1141
AcyI	GRCGYC	3 cut(s)	5, 548, 961
AfaI	GTAC	1 cut(s)	593
AgsI	TTSAA	5 cut(s)	317, 478, 557, 746, 824
AhlI	ACTAGT	1 cut(s)	502
AjnI	CCWGG	2 cut(s)	1011, 1116
AleI	CACNNNNGTG	1 cut(s)	1138
AluBI	AGCT	8 cut(s)	139, 168, 353, 424, 688, 739, 750, 1076
AluI	AGCT	8 cut(s)	139, 168, 353, 424, 688, 739, 750, 1076
Alw21I	GWGCWC	1 cut(s)	741
Alw26I	GTCTC	4 cut(s)	374, 493, 748, 1010
AlwI	GGATC	2 cut(s)	152, 1141
Ama87I	CYCGRG	1 cut(s)	1081
AoxI	GGCC	2 cut(s)	779, 813
ApeKI	GCWGC	2 cut(s)	96, 350
Asp700I	GAANNNNTTC	1 cut(s)	1065
AspS9I	GGNCC	3 cut(s)	179, 827, 943
AsuHPI	GGTGA	3 cut(s)	70, 124, 376
AvaI	CYCGRG	1 cut(s)	1081
AvaII	GGWCC	3 cut(s)	179, 827, 943
BanII	GRGCYC	1 cut(s)	741
BauI	CACGAG	1 cut(s)	50
BbsI	GAAGAC	2 cut(s)	205, 584
Bbv12I	GWGCWC	1 cut(s)	741
BbvI	GCAGC	2 cut(s)	108, 362
BccI	CCATC	4 cut(s)	686, 824, 852, 1051
BciT130I	CCWGG	2 cut(s)	1013, 1118
BcoDI	GTCTC	4 cut(s)	374, 493, 748, 1010
BcuI	ACTAGT	1 cut(s)	502
BfaI	CTAG	2 cut(s)	503, 989
BfmI	CTRYAG	2 cut(s)	354, 1160
BfuAI	ACCTGC	1 cut(s)	1024
BisI	GCNGC	2 cut(s)	97, 351
BlsI	GCNGC	2 cut(s)	98, 352
Bme1390I	CCNGG	2 cut(s)	1013, 1118
Bme18I	GGWCC	3 cut(s)	179, 827, 943
BmeT110I	CYCGRG	1 cut(s)	1081
BmgT120I	GGNCC	3 cut(s)	179, 827, 943
BmiI	GGNNCC	4 cut(s)	277, 896, 944, 945
BmrFI	CCNGG	2 cut(s)	1013, 1118
BmsI	GCATC	5 cut(s)	349, 450, 655, 1102, 1108
BpiI	GAAGAC	2 cut(s)	205, 584
BpuEI	CTTGAG	2 cut(s)	755, 772
Bsa29I	ATCGAT	1 cut(s)	283
BsaHI	GRCGYC	3 cut(s)	5, 548, 961
BsaJI	CCNNGG	3 cut(s)	142, 182, 1116
Bse1I	ACTGG	3 cut(s)	202, 830, 1100
Bse3DI	GCAATG	1 cut(s)	844
BseBI	CCWGG	2 cut(s)	1013, 1118
BseCI	ATCGAT	1 cut(s)	283
BseDI	CCNNGG	3 cut(s)	142, 182, 1116
BseGI	GGATG	5 cut(s)	816, 863, 973, 1117, 1126
BseMI	GCAATG	1 cut(s)	844
BseMII	CTCAG	3 cut(s)	488, 563, 576
BseNI	ACTGG	3 cut(s)	202, 830, 1100
BseRI	GAGGAG	2 cut(s)	131, 654
BseXI	GCAGC	2 cut(s)	108, 362
Bsh1236I	CGCG	1 cut(s)	172
Bsh1285I	CGRYCG	3 cut(s)	43, 194, 283
BshFI	GGCC	2 cut(s)	781, 815
BshVI	ATCGAT	1 cut(s)	283
BsiEI	CGRYCG	3 cut(s)	43, 194, 283
BsiHKAI	GWGCWC	1 cut(s)	741
BsiHKCI	CYCGRG	1 cut(s)	1081
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	4 cut(s)	787, 948, 956, 1109
BsmAI	GTCTC	4 cut(s)	374, 493, 748, 1010
BsmFI	GGGAC	4 cut(s)	787, 948, 956, 1109
BsnI	GGCC	2 cut(s)	781, 815
BsoBI	CYCGRG	1 cut(s)	1081
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp1407I	TGTACA	1 cut(s)	591
Bsp143I	GATC	5 cut(s)	40, 157, 280, 297, 1146
Bsp19I	CCATGG	1 cut(s)	182
BspACI	CCGC	3 cut(s)	362, 377, 982
BspANI	GGCC	2 cut(s)	781, 815
BspCNI	CTCAG	3 cut(s)	489, 564, 575
BspDI	ATCGAT	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	172
BspLI	GGNNCC	4 cut(s)	277, 896, 944, 945
BspMAI	CTGCAG	1 cut(s)	1164
BspMI	ACCTGC	1 cut(s)	1024
BspPI	GGATC	2 cut(s)	152, 1141
BsrDI	GCAATG	1 cut(s)	844
BsrGI	TGTACA	1 cut(s)	591
BsrI	ACTGG	3 cut(s)	202, 830, 1100
BssECI	CCNNGG	3 cut(s)	142, 182, 1116
BssMI	GATC	5 cut(s)	40, 157, 280, 297, 1146
BssNAI	GTATAC	1 cut(s)	1088
BssNI	GRCGYC	3 cut(s)	5, 548, 961
BssSI	CACGAG	1 cut(s)	50
BssT1I	CCWWGG	1 cut(s)	182
Bst1107I	GTATAC	1 cut(s)	1088
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	2 cut(s)	1013, 1118
Bst4CI	ACNGT	4 cut(s)	195, 275, 324, 997
BstACI	GRCGYC	3 cut(s)	5, 548, 961
BstAUI	TGTACA	1 cut(s)	591
BstC8I	GCNNGC	5 cut(s)	170, 465, 795, 1078, 1164
BstDEI	CTNAG	4 cut(s)	497, 562, 572, 887
BstDSI	CCRYGG	1 cut(s)	182
BstF5I	GGATG	5 cut(s)	816, 863, 973, 1117, 1126
BstFNI	CGCG	1 cut(s)	172
BstKTI	GATC	5 cut(s)	43, 160, 283, 300, 1149
BstMAI	GTCTC	4 cut(s)	374, 493, 748, 1010
BstMBI	GATC	5 cut(s)	40, 157, 280, 297, 1146
BstMCI	CGRYCG	3 cut(s)	43, 194, 283
BstMWI	GCNNNNNNNGC	4 cut(s)	359, 421, 464, 794
BstNI	CCWGG	2 cut(s)	1013, 1118
BstSCI	CCNGG	2 cut(s)	1011, 1116
BstSFI	CTRYAG	2 cut(s)	354, 1160
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	2 cut(s)	108, 362
BstV2I	GAAGAC	2 cut(s)	205, 584
BstXI	CCANNNNNNTGG	1 cut(s)	1140
BstZ17I	GTATAC	1 cut(s)	1088
Bsu15I	ATCGAT	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	781, 815
BsuTUI	ATCGAT	1 cut(s)	283
BtgI	CCRYGG	1 cut(s)	182
BtgZI	GCGATG	1 cut(s)	473
BtsCI	GGATG	5 cut(s)	816, 863, 973, 1117, 1126
BtsI	GCAGTG	1 cut(s)	657
BtsIMutI	CAGTG	2 cut(s)	657, 1002
BveI	ACCTGC	1 cut(s)	1024
Cac8I	GCNNGC	5 cut(s)	170, 465, 795, 1078, 1164
Cfr13I	GGNCC	3 cut(s)	179, 827, 943
ClaI	ATCGAT	1 cut(s)	283
CseI	GACGC	1 cut(s)	537
Csp6I	GTAC	1 cut(s)	592
CviAII	CATG	3 cut(s)	183, 619, 899
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	4 cut(s)	497, 562, 572, 887
DpnI	GATC	5 cut(s)	42, 159, 282, 299, 1148
DpnII	GATC	5 cut(s)	40, 157, 280, 297, 1146
EciI	GGCGGA	1 cut(s)	392
Ecl136II	GAGCTC	1 cut(s)	739
Eco130I	CCWWGG	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	741
Eco47I	GGWCC	3 cut(s)	179, 827, 943
Eco53kI	GAGCTC	1 cut(s)	739
Eco88I	CYCGRG	1 cut(s)	1081
EcoICRI	GAGCTC	1 cut(s)	739
EcoO109I	RGGNCCY	1 cut(s)	943
EcoRII	CCWGG	2 cut(s)	1011, 1116
EcoT14I	CCWWGG	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	741
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	3 cut(s)	186, 622, 902
FaqI	GGGAC	4 cut(s)	787, 948, 956, 1109
FatI	CATG	3 cut(s)	182, 618, 898
FauI	CCCGC	1 cut(s)	989
FblI	GTMKAC	2 cut(s)	702, 1087
Fnu4HI	GCNGC	2 cut(s)	97, 351
FokI	GGATG	5 cut(s)	803, 870, 960, 1124, 1133
FriOI	GRGCYC	1 cut(s)	741
Fsp4HI	GCNGC	2 cut(s)	97, 351
FspBI	CTAG	2 cut(s)	503, 989
GluI	GCNGC	2 cut(s)	97, 351
HaeIII	GGCC	2 cut(s)	781, 815
HapII	CCGG	1 cut(s)	13
HgaI	GACGC	1 cut(s)	537
Hin1I	GRCGYC	3 cut(s)	5, 548, 961
Hin1II	CATG	3 cut(s)	186, 622, 902
HindIII	AAGCTT	3 cut(s)	422, 686, 748
HinfI	GANTC	4 cut(s)	285, 509, 568, 1156
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	3 cut(s)	70, 124, 376
Hpy166II	GTNNAC	4 cut(s)	65, 271, 703, 1088
Hpy188I	TCNGA	7 cut(s)	146, 157, 254, 280, 565, 573, 651
Hpy188III	TCNNGA	4 cut(s)	38, 50, 295, 912
Hpy8I	GTNNAC	4 cut(s)	65, 271, 703, 1088
Hpy99I	CGWCG	2 cut(s)	553, 963
HpyAV	CCTTC	5 cut(s)	301, 391, 818, 994, 1055
HpyCH4III	ACNGT	4 cut(s)	195, 275, 324, 997
HpyCH4IV	ACGT	5 cut(s)	152, 312, 446, 543, 961
HpyCH4V	TGCA	7 cut(s)	463, 609, 646, 662, 682, 837, 1162
HpyF10VI	GCNNNNNNNGC	4 cut(s)	359, 421, 464, 794
HpyF3I	CTNAG	4 cut(s)	497, 562, 572, 887
HpySE526I	ACGT	5 cut(s)	152, 312, 446, 543, 961
Hsp92I	GRCGYC	3 cut(s)	5, 548, 961
Hsp92II	CATG	3 cut(s)	186, 622, 902
KflI	GGGWCCC	1 cut(s)	943
Kzo9I	GATC	5 cut(s)	40, 157, 280, 297, 1146
LmnI	GCTCC	1 cut(s)	144
Lsp1109I	GCAGC	2 cut(s)	108, 362
LweI	GCATC	5 cut(s)	349, 450, 655, 1102, 1108
MaeI	CTAG	2 cut(s)	503, 989
MaeII	ACGT	5 cut(s)	152, 312, 446, 543, 961
MaeIII	GTNAC	3 cut(s)	148, 436, 539
MalI	GATC	5 cut(s)	42, 159, 282, 299, 1148
MboI	GATC	5 cut(s)	40, 157, 280, 297, 1146
MhlI	GDGCHC	1 cut(s)	741
MluCI	AATT	5 cut(s)	106, 116, 406, 429, 696
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	2 cut(s)	306, 1001
MroXI	GAANNNNTTC	1 cut(s)	1065
MseI	TTAA	1 cut(s)	924
MslI	CAYNNNNRTG	5 cut(s)	54, 867, 1110, 1138, 1175
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	2 cut(s)	1013, 1118
MvaI	CCWGG	2 cut(s)	1013, 1118
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	4 cut(s)	359, 421, 464, 794
NcoI	CCATGG	1 cut(s)	182
NdeII	GATC	5 cut(s)	40, 157, 280, 297, 1146
NlaIII	CATG	3 cut(s)	186, 622, 902
NlaIV	GGNNCC	4 cut(s)	277, 896, 944, 945
NmuCI	GTSAC	1 cut(s)	436
OliI	CACNNNNGTG	1 cut(s)	1138
PaeR7I	CTCGAG	1 cut(s)	1081
PaqCI	CACCTGC	1 cut(s)	1024
PdmI	GAANNNNTTC	1 cut(s)	1065
PfeI	GAWTC	3 cut(s)	285, 568, 1156
PfoI	TCCNGGA	1 cut(s)	1011
PkrI	GCNGC	2 cut(s)	98, 352
Ple19I	CGATCG	2 cut(s)	43, 283
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PpuMI	RGGWCCY	1 cut(s)	943
Psp124BI	GAGCTC	1 cut(s)	741
Psp5II	RGGWCCY	1 cut(s)	943
Psp6I	CCWGG	2 cut(s)	1011, 1116
PspGI	CCWGG	2 cut(s)	1011, 1116
PspN4I	GGNNCC	4 cut(s)	277, 896, 944, 945
PspPI	GGNCC	3 cut(s)	179, 827, 943
PspPPI	RGGWCCY	1 cut(s)	943
PspXI	VCTCGAGB	1 cut(s)	1081
PstI	CTGCAG	1 cut(s)	1164
PvuI	CGATCG	2 cut(s)	43, 283
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
RseI	CAYNNNNRTG	5 cut(s)	54, 867, 1110, 1138, 1175
SacI	GAGCTC	1 cut(s)	741
SaqAI	TTAA	1 cut(s)	924
SatI	GCNGC	2 cut(s)	97, 351
Sau3AI	GATC	5 cut(s)	40, 157, 280, 297, 1146
Sau96I	GGNCC	3 cut(s)	179, 827, 943
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	2 cut(s)	1013, 1118
SduI	GDGCHC	1 cut(s)	741
SfaNI	GCATC	5 cut(s)	349, 450, 655, 1102, 1108
SfcI	CTRYAG	2 cut(s)	354, 1160
Sfr274I	CTCGAG	1 cut(s)	1081
SinI	GGWCC	3 cut(s)	179, 827, 943
SlaI	CTCGAG	1 cut(s)	1081
SmiMI	CAYNNNNRTG	5 cut(s)	54, 867, 1110, 1138, 1175
SmlI	CTYRAG	3 cut(s)	734, 751, 1081
SmoI	CTYRAG	3 cut(s)	734, 751, 1081
SpeI	ACTAGT	1 cut(s)	502
Sse9I	AATT	5 cut(s)	106, 116, 406, 429, 696
SsiI	CCGC	3 cut(s)	362, 377, 982
SspMI	CTAG	2 cut(s)	503, 989
SstI	GAGCTC	1 cut(s)	741
StyD4I	CCNGG	2 cut(s)	1011, 1116
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	4 cut(s)	195, 275, 324, 997
TaiI	ACGT	5 cut(s)	155, 315, 449, 546, 964
TaqI	TCGA	3 cut(s)	283, 294, 1082
TasI	AATT	5 cut(s)	106, 116, 406, 429, 696
TatI	WGTACW	1 cut(s)	591
TfiI	GAWTC	3 cut(s)	285, 568, 1156
Tru1I	TTAA	1 cut(s)	924
Tru9I	TTAA	1 cut(s)	924
TscAI	CASTG	2 cut(s)	664, 1002
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	2 cut(s)	96, 350
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	2 cut(s)	885, 1062
TspRI	CASTG	2 cut(s)	664, 1002
VpaK11BI	GGWCC	3 cut(s)	179, 827, 943
XhoI	CTCGAG	1 cut(s)	1081
XmiI	GTMKAC	2 cut(s)	702, 1087
XmnI	GAANNNNTTC	1 cut(s)	1065
XspI	CTAG	2 cut(s)	503, 989
ZraI	GACGTC	1 cut(s)	962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.