Rw7G035580

Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
53294578 .. 53297825
3248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G035580.1

Sequence Viewer

Length: 1263 bp
ATGGCGTCGATCCGGGGGAGAACTCTGTCGCCGGCGTTCCGAGACCGGCCGTACCTCAACGGCGGCTCTCCATTTTCGGTTCAATCGCCGTCGCAGAAGGCCTTCTCCAGCTCCAAGTACTCATCGCCGCTGGTGTCGGCGTTTGTGACATTCGCAATCACCGTCCGGAGATTCGTCGCCGGCGCTCTGTTGCAGCGGGCTCCGCGTAAAGGCCAGCAGTGGCGGCGAGCGTTTTTCCGGTGCTTGCTGTTCTTCTTCTTAGGGTTCTTGCTCGGTCTGGTTCCGTTCGGCCACGTCGACGACGACGACGCCGAGATTCGGAGCCACGGATTCAATTTTGACATCAGGCCGCCGCACGTCAATGTCCAGTTCGACGACGGCGGCGGAGATCGAGTCGTGAAGCGCAGAGTGGATCTCGTCTTGGACGTAAGCCCCGTCGTGCCGGTGGCGGAGAAATATGATGATGATGATGACGTGGCGGCGGCGGCGGTGCCGAGGAAGCAGGTGATTGTGGTGACGCCGACGTACAACCGCGCATTGCAGGCCTACTTCTTGAACAGGGTGGCGCAGCTGCTGAGGCTTGTACCTCCGCCGCTGCTTTGGATTGTGGTGGAGACGAAAGCCGCGTCGGCGGAGACTGCTGAGATTTTGAGGAAGAGTGGAGTCATGTATAGGCATTTGGTGTGTGGCAACAACTTGACCAGCGCTAAGGACCGAGGCGTGTATCAGAGGAACACGGCGTTGGAGCACATTGAGCGCCATAAGCTTGACGGCATTGTGTACTTTGGCGACGATGACAACATATACTCGCTGGACTTGTTTGATAGCTTGAGAGAAATCAACCGTTTTGGGACTTGGCCAGTTGCCATGTTAGCACCAAGCAAAAACAAGGCCATATTGGAAGGTCCAGTATGCAATGGGAGCCAAGTAAATGGATGGCATACAAATGATAAAAGCAAGAGACTGCGTAGGTTTCATGTTGATATGTCAGGATTTGCTTTCAATAGCACAATATTGTGGGATCCGAAAAGATGGCACCGCCCAACATCCATTCCAATTCGGCAATTAGATTCAGTGAAGGAGGGTTTCCAAGAGACCACTTTCATAGAACAAGTGGTTGAAGATGAAAGTCAAATGGAAGGTATTCCAGCTGGTTGTTCAAAAGTAATGAACTGGCATCTTCATTTGCGAGCTCATAGTCTTGTCTATCCCAAAGGCTGGCAACTTCAGAAGAACCTTGATGTTGTTCTCCCCATTCTGTGA

Protein Analysis

420

Amino Acids

47.51

Weight (kDa)

9.34

Isoelectric Point (pI)

56.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_43 PF03360 189 - 396 5.7e-73 Glycosyltransferase family 43
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009920)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 493
Acc36I ACCTGC 1 cut(s) 493
AccB1I GGYRCC 2 cut(s) 490, 1035
AccB7I CCANNNNNTGG 1 cut(s) 1218
AccI GTMKAC 1 cut(s) 297
AccII CGCG 3 cut(s) 205, 534, 626
AccIII TCCGGA 1 cut(s) 165
AclWI GGATC 4 cut(s) 4, 420, 1016, 1029
AcoI YGGCCR 3 cut(s) 47, 289, 857
AcuI CTGAAG 1 cut(s) 1211
AcyI GRCGYC 3 cut(s) 5, 309, 518
AfaI GTAC 5 cut(s) 53, 119, 527, 585, 782
AfeI AGCGCT 1 cut(s) 706
AfiI CCNNNNNNNGG 3 cut(s) 209, 318, 1218
AgsI TTSAA 6 cut(s) 83, 334, 556, 1003, 1121, 1161
AjiI CACGTC 3 cut(s) 295, 358, 475
AjuI GAANNNNNNNTTGG 2 cut(s) 725, 757
AluBI AGCT 6 cut(s) 111, 571, 766, 828, 1151, 1193
AluI AGCT 6 cut(s) 111, 571, 766, 828, 1151, 1193
Alw21I GWGCWC 2 cut(s) 750, 1195
Alw26I GTCTC 5 cut(s) 36, 608, 629, 955, 1088
AlwI GGATC 4 cut(s) 4, 420, 1016, 1029
AlwNI CAGNNNCTG 1 cut(s) 574
Aor13HI TCCGGA 1 cut(s) 165
Aor51HI AGCGCT 1 cut(s) 706
AoxI GGCC 8 cut(s) 47, 99, 211, 289, 347, 543, 857, 891
ApeKI GCWGC 4 cut(s) 193, 568, 571, 595
ArsI GACNNNNNNTTYG 2 cut(s) 611, 643
Asp700I GAANNNNTTC 2 cut(s) 101, 1143
AspLEI GCGC 6 cut(s) 185, 405, 536, 568, 707, 759
AspS9I GGNCC 2 cut(s) 712, 905
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 3 cut(s) 151, 517, 526
AvaII GGWCC 2 cut(s) 712, 905
BalI TGGCCA 1 cut(s) 859
BamHI GGATCC 1 cut(s) 1021
BanI GGYRCC 2 cut(s) 490, 1035
BanII GRGCYC 2 cut(s) 202, 1195
Bbv12I GWGCWC 2 cut(s) 750, 1195
BbvCI CCTCAGC 1 cut(s) 575
BbvI GCAGC 4 cut(s) 205, 558, 580, 582
BccI CCATC 2 cut(s) 930, 1026
BceAI ACGGC 6 cut(s) 34, 73, 76, 394, 753, 787
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 5 cut(s) 36, 608, 629, 955, 1088
BfoI RGCGCY 3 cut(s) 186, 708, 760
BfuAI ACCTGC 1 cut(s) 493
BglI GCCNNNNNGGC 1 cut(s) 629
BmcAI AGTACT 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 2 cut(s) 712, 905
BmgBI CACGTC 3 cut(s) 295, 358, 475
BmgT120I GGNCC 2 cut(s) 712, 905
BmiI GGNNCC 7 cut(s) 201, 282, 323, 492, 923, 1023, 1037
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 1186
BplI GAGNNNNNCTC 2 cut(s) 399, 431
BpmI CTGGAG 1 cut(s) 91
Bpu10I CCTNAGC 2 cut(s) 575, 708
BpuEI CTTGAG 1 cut(s) 850
BpuMI CCSGG 1 cut(s) 14
BsaHI GRCGYC 3 cut(s) 5, 309, 518
BsaI GGTCTC 2 cut(s) 36, 1088
BsaJI CCNNGG 4 cut(s) 13, 325, 494, 715
BsaWI WCCGGW 2 cut(s) 165, 237
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 318, 1218
Bse118I RCCGGY 4 cut(s) 31, 45, 179, 442
Bse1I ACTGG 4 cut(s) 367, 860, 908, 1178
Bse3DI GCAATG 2 cut(s) 536, 922
BseAI TCCGGA 1 cut(s) 165
BseDI CCNNGG 4 cut(s) 13, 325, 494, 715
BseGI GGATG 2 cut(s) 941, 1046
BseLI CCNNNNNNNGG 3 cut(s) 209, 318, 1218
BseMI GCAATG 2 cut(s) 536, 922
BseMII CTCAG 2 cut(s) 566, 633
BseNI ACTGG 4 cut(s) 367, 860, 908, 1178
BseX3I CGGCCG 1 cut(s) 47
BseXI GCAGC 4 cut(s) 205, 558, 580, 582
Bsh1236I CGCG 3 cut(s) 205, 534, 626
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 8 cut(s) 49, 101, 213, 291, 349, 545, 859, 893
BshNI GGYRCC 2 cut(s) 490, 1035
BsiEI CGRYCG 1 cut(s) 50
BsiHKAI GWGCWC 2 cut(s) 750, 1195
BsiSI CCGG 7 cut(s) 13, 32, 46, 166, 180, 238, 443
BslFI GGGAC 1 cut(s) 865
BslI CCNNNNNNNGG 3 cut(s) 209, 318, 1218
BsmAI GTCTC 5 cut(s) 36, 608, 629, 955, 1088
BsmBI CGTCTC 1 cut(s) 608
BsmFI GGGAC 1 cut(s) 865
BsnI GGCC 8 cut(s) 49, 101, 213, 291, 349, 545, 859, 893
Bso31I GGTCTC 2 cut(s) 36, 1088
Bsp1286I GDGCHC 3 cut(s) 202, 750, 1195
Bsp13I TCCGGA 1 cut(s) 165
Bsp143I GATC 4 cut(s) 9, 388, 412, 1021
BspANI GGCC 8 cut(s) 49, 101, 213, 291, 349, 545, 859, 893
BspCNI CTCAG 2 cut(s) 567, 634
BspEI TCCGGA 1 cut(s) 165
BspFNI CGCG 3 cut(s) 205, 534, 626
BspLI GGNNCC 7 cut(s) 201, 282, 323, 492, 923, 1023, 1037
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 4 cut(s) 4, 420, 1016, 1029
BspT107I GGYRCC 2 cut(s) 490, 1035
BspTNI GGTCTC 2 cut(s) 36, 1088
BsrDI GCAATG 2 cut(s) 536, 922
BsrFI RCCGGY 4 cut(s) 31, 45, 179, 442
BsrI ACTGG 4 cut(s) 367, 860, 908, 1178
BssAI RCCGGY 4 cut(s) 31, 45, 179, 442
BssECI CCNNGG 4 cut(s) 13, 325, 494, 715
BssMI GATC 4 cut(s) 9, 388, 412, 1021
BssNI GRCGYC 3 cut(s) 5, 309, 518
Bst4CI ACNGT 2 cut(s) 163, 845
Bst6I CTCTTC 1 cut(s) 650
BstACI GRCGYC 3 cut(s) 5, 309, 518
BstC8I GCNNGC 9 cut(s) 33, 181, 198, 215, 228, 245, 543, 1191, 1220
BstDEI CTNAG 4 cut(s) 259, 575, 642, 708
BstDSI CCRYGG 1 cut(s) 325
BstF5I GGATG 2 cut(s) 941, 1046
BstFNI CGCG 3 cut(s) 205, 534, 626
BstH2I RGCGCY 3 cut(s) 186, 708, 760
BstHHI GCGC 6 cut(s) 185, 405, 536, 568, 707, 759
BstKTI GATC 4 cut(s) 12, 391, 415, 1024
BstMAI GTCTC 5 cut(s) 36, 608, 629, 955, 1088
BstMBI GATC 4 cut(s) 9, 388, 412, 1021
BstMCI CGRYCG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 12
BstUI CGCG 3 cut(s) 205, 534, 626
BstV1I GCAGC 4 cut(s) 205, 558, 580, 582
BstX2I RGATCY 2 cut(s) 412, 1021
BstXI CCANNNNNNTGG 1 cut(s) 932
BstYI RGATCY 2 cut(s) 412, 1021
BstZI CGGCCG 1 cut(s) 47
BsuRI GGCC 8 cut(s) 49, 101, 213, 291, 349, 545, 859, 893
BtgI CCRYGG 1 cut(s) 325
BtgZI GCGATG 1 cut(s) 108
BtrI CACGTC 3 cut(s) 295, 358, 475
BtsCI GGATG 2 cut(s) 941, 1046
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 2 cut(s) 224, 1080
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 9 cut(s) 33, 181, 198, 215, 228, 245, 543, 1191, 1220
CaiI CAGNNNCTG 1 cut(s) 574
CfoI GCGC 6 cut(s) 185, 405, 536, 568, 707, 759
Cfr10I RCCGGY 4 cut(s) 31, 45, 179, 442
Cfr13I GGNCC 2 cut(s) 712, 905
CseI GACGC 3 cut(s) 317, 526, 615
Csp6I GTAC 5 cut(s) 52, 118, 526, 584, 781
CviAII CATG 3 cut(s) 667, 868, 977
CviQI GTAC 5 cut(s) 52, 118, 526, 584, 781
DdeI CTNAG 4 cut(s) 259, 575, 642, 708
DpnI GATC 4 cut(s) 11, 390, 414, 1023
DpnII GATC 4 cut(s) 9, 388, 412, 1021
EaeI YGGCCR 3 cut(s) 47, 289, 857
EagI CGGCCG 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 650
EarI CTCTTC 1 cut(s) 650
EciI GGCGGA 4 cut(s) 399, 464, 579, 647
Ecl136II GAGCTC 1 cut(s) 1193
EclXI CGGCCG 1 cut(s) 47
Eco147I AGGCCT 2 cut(s) 101, 545
Eco24I GRGCYC 2 cut(s) 202, 1195
Eco31I GGTCTC 2 cut(s) 36, 1088
Eco47I GGWCC 2 cut(s) 712, 905
Eco47III AGCGCT 1 cut(s) 706
Eco52I CGGCCG 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 1193
Eco57I CTGAAG 1 cut(s) 1211
EcoICRI GAGCTC 1 cut(s) 1193
EcoT38I GRGCYC 2 cut(s) 202, 1195
Esp3I CGTCTC 1 cut(s) 608
FaeI CATG 3 cut(s) 670, 871, 980
FaqI GGGAC 1 cut(s) 865
FatI CATG 3 cut(s) 666, 867, 976
FauI CCCGC 1 cut(s) 189
FblI GTMKAC 1 cut(s) 297
FokI GGATG 2 cut(s) 948, 1033
FriOI GRGCYC 2 cut(s) 202, 1195
GlaI GCGC 6 cut(s) 184, 404, 535, 567, 706, 758
GsuI CTGGAG 1 cut(s) 91
HaeII RGCGCY 3 cut(s) 186, 708, 760
HaeIII GGCC 8 cut(s) 49, 101, 213, 291, 349, 545, 859, 893
HapII CCGG 7 cut(s) 13, 32, 46, 166, 180, 238, 443
HgaI GACGC 3 cut(s) 317, 526, 615
HhaI GCGC 6 cut(s) 185, 405, 536, 568, 707, 759
Hin1I GRCGYC 3 cut(s) 5, 309, 518
Hin1II CATG 3 cut(s) 670, 871, 980
Hin6I GCGC 6 cut(s) 183, 403, 534, 566, 705, 757
HinP1I GCGC 6 cut(s) 183, 403, 534, 566, 705, 757
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 6 cut(s) 171, 316, 330, 393, 663, 1070
HpaII CCGG 7 cut(s) 13, 32, 46, 166, 180, 238, 443
HphI GGTGA 3 cut(s) 151, 517, 526
Hpy166II GTNNAC 2 cut(s) 298, 781
Hpy188I TCNGA 5 cut(s) 41, 321, 729, 1026, 1230
Hpy188III TCNNGA 4 cut(s) 166, 397, 553, 990
Hpy8I GTNNAC 2 cut(s) 298, 781
HpyAV CCTTC 5 cut(s) 91, 112, 896, 1072, 1133
HpyCH4III ACNGT 2 cut(s) 163, 845
HpyCH4IV ACGT 5 cut(s) 294, 357, 426, 474, 524
HpyCH4V TGCA 3 cut(s) 193, 541, 915
HpyF3I CTNAG 4 cut(s) 259, 575, 642, 708
HpySE526I ACGT 5 cut(s) 294, 357, 426, 474, 524
Hsp92I GRCGYC 3 cut(s) 5, 309, 518
Hsp92II CATG 3 cut(s) 670, 871, 980
HspAI GCGC 6 cut(s) 183, 403, 534, 566, 705, 757
Kpn2I TCCGGA 1 cut(s) 165
KroI GCCGGC 2 cut(s) 31, 179
KroNI GCCGGC 2 cut(s) 33, 181
Kzo9I GATC 4 cut(s) 9, 388, 412, 1021
LmnI GCTCC 5 cut(s) 116, 205, 321, 745, 921
Lsp1109I GCAGC 4 cut(s) 205, 558, 580, 582
LweI GCATC 1 cut(s) 1186
MaeII ACGT 5 cut(s) 294, 357, 426, 474, 524
MaeIII GTNAC 2 cut(s) 145, 514
MalI GATC 4 cut(s) 11, 390, 414, 1023
MboI GATC 4 cut(s) 9, 388, 412, 1021
MboII GAAGA 6 cut(s) 244, 247, 667, 1133, 1172, 1243
MflI RGATCY 2 cut(s) 412, 1021
MhlI GDGCHC 3 cut(s) 202, 750, 1195
MlsI TGGCCA 1 cut(s) 859
MluCI AATT 3 cut(s) 334, 1056, 1064
MluNI TGGCCA 1 cut(s) 859
MlyI GAGTC 2 cut(s) 402, 672
MmeI TCCRAC 1 cut(s) 723
MnlI CCTC 8 cut(s) 65, 489, 570, 597, 645, 710, 723, 1075
Mox20I TGGCCA 1 cut(s) 859
MreI CGCCGGCG 2 cut(s) 31, 179
MroI TCCGGA 1 cut(s) 165
MroNI GCCGGC 2 cut(s) 31, 179
MroXI GAANNNNTTC 2 cut(s) 101, 1143
MscI TGGCCA 1 cut(s) 859
MslI CAYNNNNRTG 2 cut(s) 360, 945
Msp20I TGGCCA 1 cut(s) 859
MspA1I CMGCKG 5 cut(s) 130, 196, 571, 595, 1151
MspI CCGG 7 cut(s) 13, 32, 46, 166, 180, 238, 443
MspR9I CCNGG 1 cut(s) 14
MvnI CGCG 3 cut(s) 205, 534, 626
NaeI GCCGGC 2 cut(s) 33, 181
NciI CCSGG 1 cut(s) 14
NdeII GATC 4 cut(s) 9, 388, 412, 1021
NgoMIV GCCGGC 2 cut(s) 31, 179
NlaIII CATG 3 cut(s) 670, 871, 980
NlaIV GGNNCC 7 cut(s) 201, 282, 323, 492, 923, 1023, 1037
NmeAIII GCCGAG 2 cut(s) 337, 519
NmuCI GTSAC 2 cut(s) 145, 514
PaqCI CACCTGC 1 cut(s) 493
PceI AGGCCT 2 cut(s) 101, 545
PcsI WCGNNNNNNNCGW 8 cut(s) 159, 294, 300, 303, 309, 423, 432, 623
PdiI GCCGGC 2 cut(s) 33, 181
PdmI GAANNNNTTC 2 cut(s) 101, 1143
PfeI GAWTC 4 cut(s) 171, 316, 330, 1070
PflMI CCANNNNNTGG 1 cut(s) 1218
PleI GAGTC 2 cut(s) 401, 671
PpsI GAGTC 2 cut(s) 401, 671
Psp124BI GAGCTC 1 cut(s) 1195
PspN4I GGNNCC 7 cut(s) 201, 282, 323, 492, 923, 1023, 1037
PspPI GGNCC 2 cut(s) 712, 905
PstNI CAGNNNCTG 1 cut(s) 574
PsuI RGATCY 2 cut(s) 412, 1021
PvuII CAGCTG 2 cut(s) 571, 1151
RsaI GTAC 5 cut(s) 53, 119, 527, 585, 782
RsaNI GTAC 5 cut(s) 52, 118, 526, 584, 781
RseI CAYNNNNRTG 2 cut(s) 360, 945
SacI GAGCTC 1 cut(s) 1195
SalI GTCGAC 1 cut(s) 296
Sau3AI GATC 4 cut(s) 9, 388, 412, 1021
Sau96I GGNCC 2 cut(s) 712, 905
ScaI AGTACT 1 cut(s) 119
SchI GAGTC 2 cut(s) 402, 672
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 3 cut(s) 202, 750, 1195
SfaNI GCATC 1 cut(s) 1186
SgrAI CRCCGGYG 2 cut(s) 31, 179
SgrDI CGTCGACG 1 cut(s) 296
SinI GGWCC 2 cut(s) 712, 905
SmiMI CAYNNNNRTG 2 cut(s) 360, 945
SmlI CTYRAG 1 cut(s) 829
SmoI CTYRAG 1 cut(s) 829
Sse9I AATT 3 cut(s) 334, 1056, 1064
SseBI AGGCCT 2 cut(s) 101, 545
SspI AATATT 1 cut(s) 1014
SstI GAGCTC 1 cut(s) 1195
StuI AGGCCT 2 cut(s) 101, 545
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 163, 845
TaiI ACGT 5 cut(s) 297, 360, 429, 477, 527
TaqI TCGA 4 cut(s) 8, 297, 372, 391
TaqII GACCGA 2 cut(s) 263, 729
TasI AATT 3 cut(s) 334, 1056, 1064
TatI WGTACW 2 cut(s) 117, 780
TfiI GAWTC 4 cut(s) 171, 316, 330, 1070
TscAI CASTG 2 cut(s) 224, 1080
TseFI GTSAC 2 cut(s) 145, 514
TseI GCWGC 4 cut(s) 193, 568, 571, 595
Tsp45I GTSAC 2 cut(s) 145, 514
TspDTI ATGAA 5 cut(s) 965, 1093, 1140, 1172, 1184
TspGWI ACGGA 2 cut(s) 273, 342
TspRI CASTG 2 cut(s) 224, 1080
Van91I CCANNNNNTGG 1 cut(s) 1218
VpaK11BI GGWCC 2 cut(s) 712, 905
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 2 cut(s) 101, 1143
ZrmI AGTACT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.