Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009920

Physical Location & Seq

Genomic Coordinates Forward (+)

45078506 .. 45081793

Gene Structure 3288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG403800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCGTCGATCCGGAGAACTCTGTCGCCGGCGTTCCGGGACCGGCCGTACCTCAACGGCGGCTCTCCGTTTTCAGTTCAATCGCCGTCGCAGAAGGCCTTCTCCAGCTCCAAGTACTCATCGCCGCTGGTGTCGGCGTTTGTGACATTCGCAATCACCGTCCGGAGATTCGTCGCCGGCGCTCTGTTGCAGCGGGCTCCGCGTAAAGGCCAGCAGTGGCGGCGAGCGTTTTTCCGGTGCTTGCTGTTCTTCTTCTTAGGGTTCTTGCTCGGTCTGGTTCCGTTCGGCCACGTCGACGACGACGACGCCGAGATTCGGAGCCACGCGTTCAATTTCGACATCAAGCCGCCGCACGTCAATGTCCAGTTCGACGACGGCGGCGGAGATCGAGTCGTGAAGCGCAGAGAGGATCTCGTCTTGGACGTAAGCCCCGTCGTGCCGGTGGCGGAGAAATATGATGATGATGATGATGACGTGGCGGCGGCGGTGGTGCCGAGGAAGCAGGTGATAGTGGTGACGCCGACGTACAACCGCGCATTGCAGGCCTACTTCTTGAACAGGGTGGCGCAGCTGCTGAGGCTTGTACCTCCGCCGCTGCTTTGGATTGTGGTGGAGACCAAAGCCGCGTCGGCGGAGACTGCTGAGATTTTGAGGAAGAGTGGAGTCATGTATAGGCATTTGGTGTGTGGCAACAACTTGACCAGCGCTAAGGACCGAGGCGTGTATCAGAGGAACACGGCGTTGGAGCACATTGAGCGCCATAAGCTTGACGGCATTGTGTACTTTGGCGACGATGACAACATATACTCGCTGGACTTGTTTGATAGCTTGAGAGAAATCAAGTATGTTGTTCTAAATCGAGCTTCATTTCACTTGTTTTCGAGCAATTATGCTTCTGCTAATCATTGTTCATATGCTTGTTTTAGAATGATTGTTTTCTTGGGTGTTCTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009832 GO:0009834 GO:0009987 GO:0010208 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0022607 GO:0030198 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0085029 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

318

Amino Acids

35.92

Weight (kDa)

9.11

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_43	PF03360	188 - 283	5.6e-33	Glycosyltransferase family 43

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27600 AT1G27600
fragaria_vesca	FvH4_5g33700 FvH4_5g33700 FvH4_5g33700 FvH4_5g33700
malus_domestica	MD08G1209500.v1.1 MD15G1393400.v1.1
prunus_persica	Prupe.1G541800_v2.0.a1
pyrus_communis	pycom08g18080 pycom15g35370
rosa_chinensis	RchiOBHm_Chr7g0232711
rosa_laevigata	RLG00000001315
rosa_multiflora	Rmu_sc0002147.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227960
rosa_rugosa	Rorug07G0276000
rosa_samantha	Rh7AG430700 Rh7BG403800 Rh7CG449400 Rh7DG420300
rosa_wichuraiana	Rw7G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	493
Acc36I	ACCTGC	1 cut(s)	493
AccB1I	GGYRCC	1 cut(s)	490
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	4 cut(s)	202, 326, 534, 626
AccIII	TCCGGA	2 cut(s)	12, 162
AclWI	GGATC	2 cut(s)	4, 417
AcoI	YGGCCR	2 cut(s)	44, 286
AcyI	GRCGYC	3 cut(s)	5, 306, 518
AfaI	GTAC	5 cut(s)	50, 116, 527, 585, 782
AfeI	AGCGCT	1 cut(s)	706
AfiI	CCNNNNNNNGG	2 cut(s)	206, 315
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	3 cut(s)	80, 331, 556
AjiI	CACGTC	3 cut(s)	292, 355, 475
AjuI	GAANNNNNNNTTGG	2 cut(s)	725, 757
AluBI	AGCT	5 cut(s)	108, 571, 766, 828, 863
AluI	AGCT	5 cut(s)	108, 571, 766, 828, 863
Alw21I	GWGCWC	1 cut(s)	750
Alw26I	GTCTC	2 cut(s)	608, 629
AlwI	GGATC	2 cut(s)	4, 417
AlwNI	CAGNNNCTG	1 cut(s)	574
Aor13HI	TCCGGA	2 cut(s)	12, 162
Aor51HI	AGCGCT	1 cut(s)	706
AoxI	GGCC	5 cut(s)	44, 96, 208, 286, 543
ApeKI	GCWGC	4 cut(s)	190, 568, 571, 595
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	6 cut(s)	182, 402, 536, 568, 707, 759
AspS9I	GGNCC	2 cut(s)	40, 712
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	3 cut(s)	148, 517, 526
AvaII	GGWCC	2 cut(s)	40, 712
BanI	GGYRCC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	750
BbvCI	CCTCAGC	1 cut(s)	575
BbvI	GCAGC	4 cut(s)	202, 558, 580, 582
BceAI	ACGGC	6 cut(s)	31, 70, 73, 391, 753, 787
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	608, 629
BfaI	CTAG	1 cut(s)	955
BfoI	RGCGCY	3 cut(s)	183, 708, 760
BfuAI	ACCTGC	1 cut(s)	493
BglI	GCCNNNNNGGC	1 cut(s)	629
BmcAI	AGTACT	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	2 cut(s)	40, 712
BmgBI	CACGTC	3 cut(s)	292, 355, 475
BmgT120I	GGNCC	2 cut(s)	40, 712
BmiI	GGNNCC	5 cut(s)	41, 198, 279, 320, 492
BmrFI	CCNGG	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	396, 428
BpmI	CTGGAG	1 cut(s)	88
Bpu10I	CCTNAGC	2 cut(s)	575, 708
BpuEI	CTTGAG	1 cut(s)	850
BpuMI	CCSGG	1 cut(s)	38
BsaHI	GRCGYC	3 cut(s)	5, 306, 518
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	494, 715
BsaWI	WCCGGW	3 cut(s)	12, 162, 234
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 315
Bse118I	RCCGGY	4 cut(s)	28, 42, 176, 439
Bse1I	ACTGG	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	536
BseAI	TCCGGA	2 cut(s)	12, 162
BseDI	CCNNGG	2 cut(s)	494, 715
BseLI	CCNNNNNNNGG	2 cut(s)	206, 315
BseMI	GCAATG	1 cut(s)	536
BseMII	CTCAG	2 cut(s)	566, 633
BseNI	ACTGG	1 cut(s)	364
BseX3I	CGGCCG	1 cut(s)	44
BseXI	GCAGC	4 cut(s)	202, 558, 580, 582
Bsh1236I	CGCG	4 cut(s)	202, 326, 534, 626
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	5 cut(s)	46, 98, 210, 288, 545
BshNI	GGYRCC	1 cut(s)	490
BsiEI	CGRYCG	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	750
BsiSI	CCGG	8 cut(s)	13, 29, 37, 43, 163, 177, 235, 440
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	206, 315
BsmAI	GTCTC	2 cut(s)	608, 629
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	5 cut(s)	46, 98, 210, 288, 545
Bso31I	GGTCTC	1 cut(s)	608
Bsp1286I	GDGCHC	2 cut(s)	199, 750
Bsp13I	TCCGGA	2 cut(s)	12, 162
Bsp143I	GATC	3 cut(s)	9, 385, 409
BspANI	GGCC	5 cut(s)	46, 98, 210, 288, 545
BspCNI	CTCAG	2 cut(s)	567, 634
BspEI	TCCGGA	2 cut(s)	12, 162
BspFNI	CGCG	4 cut(s)	202, 326, 534, 626
BspLI	GGNNCC	5 cut(s)	41, 198, 279, 320, 492
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	2 cut(s)	4, 417
BspT107I	GGYRCC	1 cut(s)	490
BspTNI	GGTCTC	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	536
BsrFI	RCCGGY	4 cut(s)	28, 42, 176, 439
BsrI	ACTGG	1 cut(s)	364
BssAI	RCCGGY	4 cut(s)	28, 42, 176, 439
BssECI	CCNNGG	2 cut(s)	494, 715
BssMI	GATC	3 cut(s)	9, 385, 409
BssNI	GRCGYC	3 cut(s)	5, 306, 518
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	650
BstACI	GRCGYC	3 cut(s)	5, 306, 518
BstC8I	GCNNGC	7 cut(s)	30, 178, 195, 212, 225, 242, 543
BstDEI	CTNAG	4 cut(s)	256, 575, 642, 708
BstFNI	CGCG	4 cut(s)	202, 326, 534, 626
BstH2I	RGCGCY	3 cut(s)	183, 708, 760
BstHHI	GCGC	6 cut(s)	182, 402, 536, 568, 707, 759
BstKTI	GATC	3 cut(s)	12, 388, 412
BstMAI	GTCTC	2 cut(s)	608, 629
BstMBI	GATC	3 cut(s)	9, 385, 409
BstMCI	CGRYCG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	9 cut(s)	199, 220, 499, 542, 577, 629, 638, 754, 763
BstSCI	CCNGG	1 cut(s)	36
BstUI	CGCG	4 cut(s)	202, 326, 534, 626
BstV1I	GCAGC	4 cut(s)	202, 558, 580, 582
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BstZI	CGGCCG	1 cut(s)	44
BsuRI	GGCC	5 cut(s)	46, 98, 210, 288, 545
BtgZI	GCGATG	1 cut(s)	105
BtrI	CACGTC	3 cut(s)	292, 355, 475
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	221
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	7 cut(s)	30, 178, 195, 212, 225, 242, 543
CaiI	CAGNNNCTG	1 cut(s)	574
CfoI	GCGC	6 cut(s)	182, 402, 536, 568, 707, 759
Cfr10I	RCCGGY	4 cut(s)	28, 42, 176, 439
Cfr13I	GGNCC	2 cut(s)	40, 712
CseI	GACGC	3 cut(s)	314, 526, 615
Csp6I	GTAC	5 cut(s)	49, 115, 526, 584, 781
CviAII	CATG	1 cut(s)	667
CviQI	GTAC	5 cut(s)	49, 115, 526, 584, 781
DdeI	CTNAG	4 cut(s)	256, 575, 642, 708
DpnI	GATC	3 cut(s)	11, 387, 411
DpnII	GATC	3 cut(s)	9, 385, 409
EaeI	YGGCCR	2 cut(s)	44, 286
EagI	CGGCCG	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	650
EarI	CTCTTC	1 cut(s)	650
EciI	GGCGGA	4 cut(s)	396, 461, 579, 647
EclXI	CGGCCG	1 cut(s)	44
Eco147I	AGGCCT	2 cut(s)	98, 545
Eco24I	GRGCYC	1 cut(s)	199
Eco31I	GGTCTC	1 cut(s)	608
Eco47I	GGWCC	2 cut(s)	40, 712
Eco47III	AGCGCT	1 cut(s)	706
Eco52I	CGGCCG	1 cut(s)	44
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	1 cut(s)	670
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	666
FauI	CCCGC	1 cut(s)	186
FauNDI	CATATG	1 cut(s)	913
FblI	GTMKAC	1 cut(s)	294
FriOI	GRGCYC	1 cut(s)	199
FspBI	CTAG	1 cut(s)	955
GlaI	GCGC	6 cut(s)	181, 401, 535, 567, 706, 758
GsuI	CTGGAG	1 cut(s)	88
HaeII	RGCGCY	3 cut(s)	183, 708, 760
HaeIII	GGCC	5 cut(s)	46, 98, 210, 288, 545
HapII	CCGG	8 cut(s)	13, 29, 37, 43, 163, 177, 235, 440
HgaI	GACGC	3 cut(s)	314, 526, 615
HhaI	GCGC	6 cut(s)	182, 402, 536, 568, 707, 759
Hin1I	GRCGYC	3 cut(s)	5, 306, 518
Hin1II	CATG	1 cut(s)	670
Hin6I	GCGC	6 cut(s)	180, 400, 534, 566, 705, 757
HinP1I	GCGC	6 cut(s)	180, 400, 534, 566, 705, 757
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	764
HinfI	GANTC	4 cut(s)	168, 313, 390, 663
HpaII	CCGG	8 cut(s)	13, 29, 37, 43, 163, 177, 235, 440
HphI	GGTGA	3 cut(s)	148, 517, 526
Hpy166II	GTNNAC	2 cut(s)	295, 781
Hpy188I	TCNGA	2 cut(s)	318, 729
Hpy188III	TCNNGA	4 cut(s)	13, 163, 394, 553
Hpy8I	GTNNAC	2 cut(s)	295, 781
HpyAV	CCTTC	2 cut(s)	88, 109
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	5 cut(s)	291, 354, 423, 474, 524
HpyCH4V	TGCA	2 cut(s)	190, 541
HpyF10VI	GCNNNNNNNGC	9 cut(s)	199, 220, 499, 542, 577, 629, 638, 754, 763
HpyF3I	CTNAG	4 cut(s)	256, 575, 642, 708
HpySE526I	ACGT	5 cut(s)	291, 354, 423, 474, 524
Hsp92I	GRCGYC	3 cut(s)	5, 306, 518
Hsp92II	CATG	1 cut(s)	670
HspAI	GCGC	6 cut(s)	180, 400, 534, 566, 705, 757
Kpn2I	TCCGGA	2 cut(s)	12, 162
KroI	GCCGGC	2 cut(s)	28, 176
KroNI	GCCGGC	2 cut(s)	30, 178
Kzo9I	GATC	3 cut(s)	9, 385, 409
LmnI	GCTCC	4 cut(s)	113, 202, 318, 745
Lsp1109I	GCAGC	4 cut(s)	202, 558, 580, 582
MaeI	CTAG	1 cut(s)	955
MaeII	ACGT	5 cut(s)	291, 354, 423, 474, 524
MaeIII	GTNAC	2 cut(s)	142, 514
MalI	GATC	3 cut(s)	11, 387, 411
MboI	GATC	3 cut(s)	9, 385, 409
MboII	GAAGA	3 cut(s)	241, 244, 667
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	2 cut(s)	199, 750
MluCI	AATT	2 cut(s)	331, 886
MluI	ACGCGT	1 cut(s)	324
MlyI	GAGTC	2 cut(s)	399, 672
MmeI	TCCRAC	1 cut(s)	723
MnlI	CCTC	8 cut(s)	62, 400, 489, 570, 597, 645, 710, 723
MreI	CGCCGGCG	2 cut(s)	28, 176
MroI	TCCGGA	2 cut(s)	12, 162
MroNI	GCCGGC	2 cut(s)	28, 176
MroXI	GAANNNNTTC	1 cut(s)	98
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	4 cut(s)	127, 193, 571, 595
MspI	CCGG	8 cut(s)	13, 29, 37, 43, 163, 177, 235, 440
MspR9I	CCNGG	1 cut(s)	38
MvnI	CGCG	4 cut(s)	202, 326, 534, 626
MwoI	GCNNNNNNNGC	9 cut(s)	199, 220, 499, 542, 577, 629, 638, 754, 763
NaeI	GCCGGC	2 cut(s)	30, 178
NciI	CCSGG	1 cut(s)	38
NdeI	CATATG	1 cut(s)	913
NdeII	GATC	3 cut(s)	9, 385, 409
NgoMIV	GCCGGC	2 cut(s)	28, 176
NlaIII	CATG	1 cut(s)	670
NlaIV	GGNNCC	5 cut(s)	41, 198, 279, 320, 492
NmeAIII	GCCGAG	2 cut(s)	334, 519
NmuCI	GTSAC	2 cut(s)	142, 514
PaqCI	CACCTGC	1 cut(s)	493
PceI	AGGCCT	2 cut(s)	98, 545
PcsI	WCGNNNNNNNCGW	7 cut(s)	156, 291, 297, 300, 306, 420, 429
PdiI	GCCGGC	2 cut(s)	30, 178
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	168, 313
PfoI	TCCNGGA	1 cut(s)	36
PleI	GAGTC	2 cut(s)	398, 671
PpsI	GAGTC	2 cut(s)	398, 671
PspN4I	GGNNCC	5 cut(s)	41, 198, 279, 320, 492
PspPI	GGNCC	2 cut(s)	40, 712
PstNI	CAGNNNCTG	1 cut(s)	574
PsuI	RGATCY	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	571
RsaI	GTAC	5 cut(s)	50, 116, 527, 585, 782
RsaNI	GTAC	5 cut(s)	49, 115, 526, 584, 781
RseI	CAYNNNNRTG	1 cut(s)	357
SalI	GTCGAC	1 cut(s)	293
Sau3AI	GATC	3 cut(s)	9, 385, 409
Sau96I	GGNCC	2 cut(s)	40, 712
ScaI	AGTACT	1 cut(s)	116
SchI	GAGTC	2 cut(s)	399, 672
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	199, 750
SgrAI	CRCCGGYG	2 cut(s)	28, 176
SgrDI	CGTCGACG	1 cut(s)	293
SinI	GGWCC	2 cut(s)	40, 712
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	829
SmoI	CTYRAG	1 cut(s)	829
Sse9I	AATT	2 cut(s)	331, 886
SseBI	AGGCCT	2 cut(s)	98, 545
SspMI	CTAG	1 cut(s)	955
StuI	AGGCCT	2 cut(s)	98, 545
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	5 cut(s)	294, 357, 426, 477, 527
TaqI	TCGA	7 cut(s)	8, 294, 336, 369, 388, 859, 881
TaqII	GACCGA	2 cut(s)	260, 729
TasI	AATT	2 cut(s)	331, 886
TatI	WGTACW	2 cut(s)	114, 780
TfiI	GAWTC	2 cut(s)	168, 313
TscAI	CASTG	1 cut(s)	221
TseFI	GTSAC	2 cut(s)	142, 514
TseI	GCWGC	4 cut(s)	190, 568, 571, 595
Tsp45I	GTSAC	2 cut(s)	142, 514
TspDTI	ATGAA	2 cut(s)	855, 900
TspGWI	ACGGA	2 cut(s)	57, 270
TspRI	CASTG	1 cut(s)	221
VpaK11BI	GGWCC	2 cut(s)	40, 712
XmiI	GTMKAC	1 cut(s)	294
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	1 cut(s)	955
ZrmI	AGTACT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.