RLG00000001315

Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
13966570 .. 13968824
2255 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001315

Sequence Viewer

Length: 1170 bp
ATGGCGTCGATCCGGGGGAGAACTCTGTCGCCGGCGTTCCGAGACCGGCCCTACCTCAACGGCGGCTCTCCGTTTTCAGTTCAATCGCCGTCGCAGAAGGCCTTCTCCAGCTCCAAGTACTCATCGCCGCTGGTGTCGGCGTTTGTGACATTCGCAATCACCGTCCGGAGATTCGTCGCCGGCGCTCTGTTGCAGCGGGCTCCGCGTAAAGGCCAGCAGTGGCGGCGAGCGTTTTTCCGGTGCTTGCTGTTCTTCTTCTTAGGGTTCTTGCTCGGTCTGGTTCCGTTCGGCCACGTCGACGACGACGACGCCGAGATTCGGAGCCACGCGTTCAATTTCGACATCAAGCCGCCGCACGTCAATGTCCAGTTCGACGACGGCGGCGGAGATCGAGTCGTGAAGCGCAGAGAGGATCTCGTCTTGGACGTAAGCCCAGTCGTGCCGGTGGTGGAGAAATATGATGATGACGTGGCGTCGGGGGCGTCGGTGGTGGTGCCGAGGAAGCAGGTGATTGTGGTGACGCCGACGTACAACCGCGCATTGCAGGCCTACTTCTTGAACAGGGTGGCGCAGCTGCTGAGGCTTGTGCCTCCGCCGCTGCTTTGGATTGTGGTGGAGACCAAGGCCGCGTCGGCGGAGACTGCTGAGGTTTTGAGGAAGAGTGGAGTCATGTATAGGCATTTGGTGTGTGGCAACAACTTGACCAGCGCTAAGGACCGAGGCGTGTATCAGAGGAACACGGCATTGGAGCACATTGAGCGCCATAAGCTTGACGGCATTGTGTACTTTGGGGACGATGACAACATATACTCGCTGGACTTGTTTGATAGCTTGAGAGAAATCAACCGTTTTGGGACTTGGCCAGTTGCCATGTTAGCACCAAGCAAAAACAAGGCCATATTGGAAGGTCCAGTATGCAATGGGAGCCAAGTAAATGGATGGCATACAAATGATAAAAGCAAGAGACTGCGTAGGTTTCATGTTGATATGTCAGGATTTGCTTTCAATAGCACAATATTGTGGGATCCGAAAAGATGGCACCGTCCAACATCCATTCCAATTCGGCAATTAGATTCAGTGAAGGAGGGTTTCCAAGTATGTGACATACTGACATGTCGTTACATTTTTAGAAGTGTGCTTGCAATATCATCGTATAGTTCATCACTTTGA

Protein Analysis

390

Amino Acids

43.87

Weight (kDa)

9.66

Isoelectric Point (pI)

56.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_43 PF03360 190 - 365 3.3e-59 Glycosyltransferase family 43
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009920)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 496
Acc36I ACCTGC 1 cut(s) 496
AccB1I GGYRCC 2 cut(s) 493, 1038
AccI GTMKAC 1 cut(s) 297
AccII CGCG 4 cut(s) 205, 329, 537, 629
AccIII TCCGGA 1 cut(s) 165
AclWI GGATC 4 cut(s) 4, 420, 1019, 1032
AcoI YGGCCR 2 cut(s) 289, 860
AcyI GRCGYC 5 cut(s) 5, 309, 473, 482, 521
AfaI GTAC 3 cut(s) 119, 530, 785
AfeI AGCGCT 1 cut(s) 709
AfiI CCNNNNNNNGG 2 cut(s) 209, 318
AflIII ACRYGT 2 cut(s) 327, 1112
AgsI TTSAA 4 cut(s) 83, 334, 559, 1006
AhdI GACNNNNNGTC 1 cut(s) 472
AjiI CACGTC 3 cut(s) 295, 358, 469
AjuI GAANNNNNNNTTGG 2 cut(s) 728, 760
AluBI AGCT 4 cut(s) 111, 574, 769, 831
AluI AGCT 4 cut(s) 111, 574, 769, 831
Alw21I GWGCWC 1 cut(s) 753
Alw26I GTCTC 4 cut(s) 36, 611, 632, 958
AlwI GGATC 4 cut(s) 4, 420, 1019, 1032
AlwNI CAGNNNCTG 1 cut(s) 577
Aor13HI TCCGGA 1 cut(s) 165
Aor51HI AGCGCT 1 cut(s) 709
AoxI GGCC 8 cut(s) 47, 99, 211, 289, 546, 624, 860, 894
ApeKI GCWGC 4 cut(s) 193, 571, 574, 598
Asp700I GAANNNNTTC 1 cut(s) 101
AspLEI GCGC 6 cut(s) 185, 405, 539, 571, 710, 762
AspS9I GGNCC 3 cut(s) 48, 715, 908
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 3 cut(s) 151, 520, 529
AvaII GGWCC 2 cut(s) 715, 908
BalI TGGCCA 1 cut(s) 862
BamHI GGATCC 1 cut(s) 1024
BanI GGYRCC 2 cut(s) 493, 1038
BanII GRGCYC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 753
BbvCI CCTCAGC 2 cut(s) 578, 645
BbvI GCAGC 4 cut(s) 205, 561, 583, 585
BccI CCATC 2 cut(s) 933, 1029
BceAI ACGGC 5 cut(s) 73, 76, 394, 756, 790
BcgI CGANNNNNNTGC 2 cut(s) 1131, 1165
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 4 cut(s) 36, 611, 632, 958
BfoI RGCGCY 3 cut(s) 186, 711, 763
BfuAI ACCTGC 1 cut(s) 496
BglI GCCNNNNNGGC 1 cut(s) 632
BmcAI AGTACT 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 2 cut(s) 715, 908
BmeRI GACNNNNNGTC 1 cut(s) 472
BmgBI CACGTC 3 cut(s) 295, 358, 469
BmgT120I GGNCC 3 cut(s) 48, 715, 908
BmiI GGNNCC 7 cut(s) 201, 282, 323, 495, 926, 1026, 1040
BmrFI CCNGG 1 cut(s) 14
BmrI ACTGGG 1 cut(s) 428
BmuI ACTGGG 1 cut(s) 428
BplI GAGNNNNNCTC 2 cut(s) 399, 431
BpmI CTGGAG 1 cut(s) 91
Bpu10I CCTNAGC 3 cut(s) 578, 645, 711
BpuEI CTTGAG 1 cut(s) 853
BpuMI CCSGG 1 cut(s) 14
BsaHI GRCGYC 5 cut(s) 5, 309, 473, 482, 521
BsaI GGTCTC 2 cut(s) 36, 611
BsaJI CCNNGG 4 cut(s) 13, 497, 621, 718
BsaWI WCCGGW 2 cut(s) 165, 237
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 318
Bse118I RCCGGY 4 cut(s) 31, 45, 179, 442
Bse1I ACTGG 4 cut(s) 367, 434, 863, 911
Bse3DI GCAATG 2 cut(s) 539, 925
BseAI TCCGGA 1 cut(s) 165
BseDI CCNNGG 4 cut(s) 13, 497, 621, 718
BseGI GGATG 2 cut(s) 944, 1049
BseLI CCNNNNNNNGG 2 cut(s) 209, 318
BseMI GCAATG 2 cut(s) 539, 925
BseMII CTCAG 2 cut(s) 569, 636
BseNI ACTGG 4 cut(s) 367, 434, 863, 911
BseXI GCAGC 4 cut(s) 205, 561, 583, 585
Bsh1236I CGCG 4 cut(s) 205, 329, 537, 629
BshFI GGCC 8 cut(s) 49, 101, 213, 291, 548, 626, 862, 896
BshNI GGYRCC 2 cut(s) 493, 1038
BsiHKAI GWGCWC 1 cut(s) 753
BsiSI CCGG 7 cut(s) 13, 32, 46, 166, 180, 238, 443
BslFI GGGAC 2 cut(s) 806, 868
BslI CCNNNNNNNGG 2 cut(s) 209, 318
BsmAI GTCTC 4 cut(s) 36, 611, 632, 958
BsmFI GGGAC 2 cut(s) 806, 868
BsnI GGCC 8 cut(s) 49, 101, 213, 291, 548, 626, 862, 896
Bso31I GGTCTC 2 cut(s) 36, 611
Bsp1286I GDGCHC 2 cut(s) 202, 753
Bsp13I TCCGGA 1 cut(s) 165
Bsp143I GATC 4 cut(s) 9, 388, 412, 1024
BspANI GGCC 8 cut(s) 49, 101, 213, 291, 548, 626, 862, 896
BspCNI CTCAG 2 cut(s) 570, 637
BspEI TCCGGA 1 cut(s) 165
BspFNI CGCG 4 cut(s) 205, 329, 537, 629
BspLI GGNNCC 7 cut(s) 201, 282, 323, 495, 926, 1026, 1040
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 4 cut(s) 4, 420, 1019, 1032
BspT107I GGYRCC 2 cut(s) 493, 1038
BspTNI GGTCTC 2 cut(s) 36, 611
BsrDI GCAATG 2 cut(s) 539, 925
BsrFI RCCGGY 4 cut(s) 31, 45, 179, 442
BsrI ACTGG 4 cut(s) 367, 434, 863, 911
BssAI RCCGGY 4 cut(s) 31, 45, 179, 442
BssECI CCNNGG 4 cut(s) 13, 497, 621, 718
BssMI GATC 4 cut(s) 9, 388, 412, 1024
BssNI GRCGYC 5 cut(s) 5, 309, 473, 482, 521
BssT1I CCWWGG 1 cut(s) 621
Bst4CI ACNGT 3 cut(s) 163, 848, 1043
Bst6I CTCTTC 1 cut(s) 653
BstACI GRCGYC 5 cut(s) 5, 309, 473, 482, 521
BstC8I GCNNGC 8 cut(s) 33, 181, 198, 215, 228, 245, 546, 1140
BstDEI CTNAG 4 cut(s) 259, 578, 645, 711
BstF5I GGATG 2 cut(s) 944, 1049
BstFNI CGCG 4 cut(s) 205, 329, 537, 629
BstH2I RGCGCY 3 cut(s) 186, 711, 763
BstHHI GCGC 6 cut(s) 185, 405, 539, 571, 710, 762
BstKTI GATC 4 cut(s) 12, 391, 415, 1027
BstMAI GTCTC 4 cut(s) 36, 611, 632, 958
BstMBI GATC 4 cut(s) 9, 388, 412, 1024
BstNSI RCATGY 1 cut(s) 1116
BstSCI CCNGG 1 cut(s) 12
BstUI CGCG 4 cut(s) 205, 329, 537, 629
BstV1I GCAGC 4 cut(s) 205, 561, 583, 585
BstX2I RGATCY 2 cut(s) 412, 1024
BstXI CCANNNNNNTGG 1 cut(s) 935
BstYI RGATCY 2 cut(s) 412, 1024
BsuRI GGCC 8 cut(s) 49, 101, 213, 291, 548, 626, 862, 896
BtgZI GCGATG 1 cut(s) 108
BtrI CACGTC 3 cut(s) 295, 358, 469
BtsCI GGATG 2 cut(s) 944, 1049
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 2 cut(s) 224, 1083
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 8 cut(s) 33, 181, 198, 215, 228, 245, 546, 1140
CaiI CAGNNNCTG 1 cut(s) 577
CfoI GCGC 6 cut(s) 185, 405, 539, 571, 710, 762
Cfr10I RCCGGY 4 cut(s) 31, 45, 179, 442
Cfr13I GGNCC 3 cut(s) 48, 715, 908
CseI GACGC 5 cut(s) 317, 462, 471, 529, 618
Csp6I GTAC 3 cut(s) 118, 529, 784
CviAII CATG 4 cut(s) 670, 871, 980, 1113
CviQI GTAC 3 cut(s) 118, 529, 784
DdeI CTNAG 4 cut(s) 259, 578, 645, 711
DpnI GATC 4 cut(s) 11, 390, 414, 1026
DpnII GATC 4 cut(s) 9, 388, 412, 1024
DriI GACNNNNNGTC 1 cut(s) 472
EaeI YGGCCR 2 cut(s) 289, 860
Eam1104I CTCTTC 1 cut(s) 653
Eam1105I GACNNNNNGTC 1 cut(s) 472
EarI CTCTTC 1 cut(s) 653
EciI GGCGGA 3 cut(s) 399, 582, 650
Eco130I CCWWGG 1 cut(s) 621
Eco147I AGGCCT 2 cut(s) 101, 548
Eco24I GRGCYC 1 cut(s) 202
Eco31I GGTCTC 2 cut(s) 36, 611
Eco47I GGWCC 2 cut(s) 715, 908
Eco47III AGCGCT 1 cut(s) 709
EcoT14I CCWWGG 1 cut(s) 621
EcoT38I GRGCYC 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 621
FaeI CATG 4 cut(s) 673, 874, 983, 1116
FaqI GGGAC 2 cut(s) 806, 868
FatI CATG 4 cut(s) 669, 870, 979, 1112
FauI CCCGC 1 cut(s) 189
FblI GTMKAC 1 cut(s) 297
FokI GGATG 2 cut(s) 951, 1036
FriOI GRGCYC 1 cut(s) 202
GlaI GCGC 6 cut(s) 184, 404, 538, 570, 709, 761
GsuI CTGGAG 1 cut(s) 91
HaeII RGCGCY 3 cut(s) 186, 711, 763
HaeIII GGCC 8 cut(s) 49, 101, 213, 291, 548, 626, 862, 896
HapII CCGG 7 cut(s) 13, 32, 46, 166, 180, 238, 443
HgaI GACGC 5 cut(s) 317, 462, 471, 529, 618
HhaI GCGC 6 cut(s) 185, 405, 539, 571, 710, 762
Hin1I GRCGYC 5 cut(s) 5, 309, 473, 482, 521
Hin1II CATG 4 cut(s) 673, 874, 983, 1116
Hin6I GCGC 6 cut(s) 183, 403, 537, 569, 708, 760
HinP1I GCGC 6 cut(s) 183, 403, 537, 569, 708, 760
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HindIII AAGCTT 1 cut(s) 767
HinfI GANTC 5 cut(s) 171, 316, 393, 666, 1073
HpaII CCGG 7 cut(s) 13, 32, 46, 166, 180, 238, 443
HphI GGTGA 3 cut(s) 151, 520, 529
Hpy166II GTNNAC 2 cut(s) 298, 784
Hpy188I TCNGA 4 cut(s) 41, 321, 732, 1029
Hpy188III TCNNGA 4 cut(s) 166, 397, 556, 993
Hpy8I GTNNAC 2 cut(s) 298, 784
HpyAV CCTTC 4 cut(s) 91, 112, 899, 1075
HpyCH4III ACNGT 3 cut(s) 163, 848, 1043
HpyCH4IV ACGT 5 cut(s) 294, 357, 426, 468, 527
HpyCH4V TGCA 4 cut(s) 193, 544, 918, 1142
HpyF3I CTNAG 4 cut(s) 259, 578, 645, 711
HpySE526I ACGT 5 cut(s) 294, 357, 426, 468, 527
Hsp92I GRCGYC 5 cut(s) 5, 309, 473, 482, 521
Hsp92II CATG 4 cut(s) 673, 874, 983, 1116
HspAI GCGC 6 cut(s) 183, 403, 537, 569, 708, 760
Kpn2I TCCGGA 1 cut(s) 165
KroI GCCGGC 2 cut(s) 31, 179
KroNI GCCGGC 2 cut(s) 33, 181
Kzo9I GATC 4 cut(s) 9, 388, 412, 1024
LmnI GCTCC 5 cut(s) 116, 205, 321, 748, 924
Lsp1109I GCAGC 4 cut(s) 205, 561, 583, 585
MaeII ACGT 5 cut(s) 294, 357, 426, 468, 527
MaeIII GTNAC 4 cut(s) 145, 517, 1100, 1118
MalI GATC 4 cut(s) 11, 390, 414, 1026
MboI GATC 4 cut(s) 9, 388, 412, 1024
MboII GAAGA 3 cut(s) 244, 247, 670
MflI RGATCY 2 cut(s) 412, 1024
MhlI GDGCHC 2 cut(s) 202, 753
MlsI TGGCCA 1 cut(s) 862
MluCI AATT 3 cut(s) 334, 1059, 1067
MluI ACGCGT 1 cut(s) 327
MluNI TGGCCA 1 cut(s) 862
MlyI GAGTC 2 cut(s) 402, 675
MmeI TCCRAC 1 cut(s) 1070
Mox20I TGGCCA 1 cut(s) 862
MreI CGCCGGCG 2 cut(s) 31, 179
MroI TCCGGA 1 cut(s) 165
MroNI GCCGGC 2 cut(s) 31, 179
MroXI GAANNNNTTC 1 cut(s) 101
MscI TGGCCA 1 cut(s) 862
MslI CAYNNNNRTG 2 cut(s) 360, 948
Msp20I TGGCCA 1 cut(s) 862
MspA1I CMGCKG 4 cut(s) 130, 196, 574, 598
MspI CCGG 7 cut(s) 13, 32, 46, 166, 180, 238, 443
MspR9I CCNGG 1 cut(s) 14
MvnI CGCG 4 cut(s) 205, 329, 537, 629
NaeI GCCGGC 2 cut(s) 33, 181
NciI CCSGG 1 cut(s) 14
NdeII GATC 4 cut(s) 9, 388, 412, 1024
NgoMIV GCCGGC 2 cut(s) 31, 179
NlaIII CATG 4 cut(s) 673, 874, 983, 1116
NlaIV GGNNCC 7 cut(s) 201, 282, 323, 495, 926, 1026, 1040
NmeAIII GCCGAG 2 cut(s) 337, 522
NmuCI GTSAC 3 cut(s) 145, 517, 1100
NspI RCATGY 1 cut(s) 1116
PaqCI CACCTGC 1 cut(s) 496
PceI AGGCCT 2 cut(s) 101, 548
PciI ACATGT 1 cut(s) 1112
PcsI WCGNNNNNNNCGW 6 cut(s) 159, 294, 300, 303, 309, 423
PdiI GCCGGC 2 cut(s) 33, 181
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 3 cut(s) 171, 316, 1073
PleI GAGTC 2 cut(s) 401, 674
PpsI GAGTC 2 cut(s) 401, 674
PscI ACATGT 1 cut(s) 1112
PspN4I GGNNCC 7 cut(s) 201, 282, 323, 495, 926, 1026, 1040
PspPI GGNCC 3 cut(s) 48, 715, 908
PstNI CAGNNNCTG 1 cut(s) 577
PsuI RGATCY 2 cut(s) 412, 1024
PvuII CAGCTG 1 cut(s) 574
RsaI GTAC 3 cut(s) 119, 530, 785
RsaNI GTAC 3 cut(s) 118, 529, 784
RseI CAYNNNNRTG 2 cut(s) 360, 948
SalI GTCGAC 1 cut(s) 296
Sau3AI GATC 4 cut(s) 9, 388, 412, 1024
Sau96I GGNCC 3 cut(s) 48, 715, 908
ScaI AGTACT 1 cut(s) 119
SchI GAGTC 2 cut(s) 402, 675
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 2 cut(s) 202, 753
SgrAI CRCCGGYG 2 cut(s) 31, 179
SgrDI CGTCGACG 1 cut(s) 296
SinI GGWCC 2 cut(s) 715, 908
SmiMI CAYNNNNRTG 2 cut(s) 360, 948
SmlI CTYRAG 1 cut(s) 832
SmoI CTYRAG 1 cut(s) 832
Sse9I AATT 3 cut(s) 334, 1059, 1067
SseBI AGGCCT 2 cut(s) 101, 548
SspI AATATT 1 cut(s) 1017
StuI AGGCCT 2 cut(s) 101, 548
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 3 cut(s) 163, 848, 1043
TaiI ACGT 5 cut(s) 297, 360, 429, 471, 530
TaqI TCGA 5 cut(s) 8, 297, 339, 372, 391
TaqII GACCGA 2 cut(s) 263, 732
TasI AATT 3 cut(s) 334, 1059, 1067
TatI WGTACW 2 cut(s) 117, 783
TauI GCSGC 8 cut(s) 66, 130, 226, 352, 355, 384, 598, 629
TfiI GAWTC 3 cut(s) 171, 316, 1073
TscAI CASTG 2 cut(s) 224, 1083
TseFI GTSAC 3 cut(s) 145, 517, 1100
TseI GCWGC 4 cut(s) 193, 571, 574, 598
Tsp45I GTSAC 3 cut(s) 145, 517, 1100
TspDTI ATGAA 2 cut(s) 968, 1149
TspGWI ACGGA 2 cut(s) 60, 273
TspRI CASTG 2 cut(s) 224, 1083
VpaK11BI GGWCC 2 cut(s) 715, 908
XceI RCATGY 1 cut(s) 1116
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 101
ZrmI AGTACT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.