pycom08g18080

Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
18286634 .. 18288633
2000 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g18080.3

Sequence Viewer

Length: 1230 bp
ATGGCGTCGATCCGGAGAACTCTATCGCCGGCGTTCCGAGACCGGCCGTACGTGAACGGCGCCGGCTCTCCATTTTCAGTGCCGTCGCCGTCGCAGAAGCTTCTCTCCAGCTCTAGATACTCTCCGCCTTTCCCGTCGGTGATCCTCGCCTTCGCCGTCAACGTCCGGCGCTTCGTTGCCGGAGTTCTCTTTCACCTGCCTAATCGCAAGGGCCAGCAATGGCGTCGAGGTTTCTACAGGTGCTTGCTCTTCTTCTTCTTAGGGTTTTTACTCGGCCTATTACCGTTCGGCCACGTTGACGACGACGAGATTCGAGGTCGCAGCAATTTCGACATCGAGCCGCCCCACGTCAATGTCCAGTTCGACACCGACAACGCGGATCCGGCCGTGAAACGGCGGGAAGATCTCGTCGTCGACGTGAGCCTCGGCGTCGTGGAGAGGAGTGTGGATTTGGTGCCGAGGAAGCAGCTGATTATTGCGACACCTACGTACAACCACGCACTGCAGGCCTATTTCTTAAACAGGTTGGGGCAGCTGCTCGGGCTTGTACCTCCGCCACTGCTATGGATTGTGGTGGAAACCAACACCGCATCGATGGAGACGGCGGAGATTTTGAGGAAGAGCGGCGTGATGTATCGGCATTTGGTGTGTGGCGACAATTCGACTAGCGCCAAGGACCGAGGTGTTTATCAGAGGAACACTGCGTTGGAGCACATTGAGCGGCATAGGCTTGATGGCATTGTTTACTTCGCCGACGACGATAATATATACTCCCTCGACTTGTTTGATCGCTTGAGAGACATTAGCCGGTTTGGAACTTGGCCTGTTGCTATGTTATGGCAAAGCAAAAACAAGGCTATATTGGAAGGTCCAGTATGCAATGGGAGCCAAGTAGTTGGATGGCACACAAATGAGAAAAGCAAGAGGCTTCGTAGGTTTCATGTTGATATGTCAGGGTTTGCTTTTAATAGCACAATATTGTGGGATCCAAAGCGATGGCACCGCCCCACTTCTGCTTCAATTCGACAATTAGATACAGTGAAGGAGGGTTTCCAAGAGACCACTTTTATAGAACAAGTTGTGGAAGATGAGAGTCAAATGGAAGGTACCCCAGCCGGCTGTTCAAAAGTAATGAACTGGCATCTACATTTGGAAGCTCATACTCTTGTTTATCCCAAAGGCTGGCAACTTCTGCAGAACCTTGATGTTGTTCTCCCCATTGAACGATAG

Protein Analysis

410

Amino Acids

46.7

Weight (kDa)

8.81

Isoelectric Point (pI)

57.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009920)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 204
Acc36I ACCTGC 1 cut(s) 204
Acc65I GGTACC 1 cut(s) 1106
AccB1I GGYRCC 4 cut(s) 59, 454, 999, 1106
AccB7I CCANNNNNTGG 1 cut(s) 1182
AccBSI CCGCTC 2 cut(s) 624, 721
AccI GTMKAC 1 cut(s) 414
AccII CGCG 1 cut(s) 377
AccIII TCCGGA 1 cut(s) 12
AclWI GGATC 6 cut(s) 4, 136, 374, 387, 980, 993
AcoI YGGCCR 3 cut(s) 44, 289, 384
AcyI GRCGYC 4 cut(s) 5, 60, 223, 429
AfaI GTAC 4 cut(s) 50, 491, 549, 1108
AfiI CCNNNNNNNGG 2 cut(s) 393, 1182
AgsI TTSAA 3 cut(s) 1020, 1125, 1223
AjiI CACGTC 2 cut(s) 349, 418
AjuI GAANNNNNNNTTGG 2 cut(s) 689, 721
AluBI AGCT 5 cut(s) 100, 111, 469, 535, 1157
AluI AGCT 5 cut(s) 100, 111, 469, 535, 1157
Alw21I GWGCWC 1 cut(s) 714
Alw26I GTCTC 4 cut(s) 33, 593, 792, 1052
AlwI GGATC 6 cut(s) 4, 136, 374, 387, 980, 993
Ama87I CYCGRG 1 cut(s) 539
Aor13HI TCCGGA 1 cut(s) 12
AoxI GGCC 7 cut(s) 44, 211, 274, 289, 384, 507, 821
ApeKI GCWGC 4 cut(s) 321, 466, 532, 535
Asp718I GGTACC 1 cut(s) 1106
AspLEI GCGC 3 cut(s) 62, 171, 671
AspS9I GGNCC 3 cut(s) 211, 676, 869
AsuHPI GGTGA 2 cut(s) 151, 185
AvaI CYCGRG 1 cut(s) 539
AvaII GGWCC 2 cut(s) 676, 869
BamHI GGATCC 2 cut(s) 379, 985
BanI GGYRCC 4 cut(s) 59, 454, 999, 1106
Bbv12I GWGCWC 1 cut(s) 714
BbvI GCAGC 4 cut(s) 333, 478, 522, 544
BccI CCATC 4 cut(s) 589, 728, 894, 990
BceAI ACGGC 8 cut(s) 31, 67, 73, 73, 140, 371, 410, 618
BcgI CGANNNNNNTGC 4 cut(s) 206, 240, 310, 344
BcoDI GTCTC 4 cut(s) 33, 593, 792, 1052
BfaI CTAG 2 cut(s) 114, 666
BfmI CTRYAG 3 cut(s) 235, 503, 1193
BfoI RGCGCY 3 cut(s) 63, 172, 672
BfuAI ACCTGC 1 cut(s) 204
BglII AGATCT 1 cut(s) 403
BisI GCNGC 7 cut(s) 322, 341, 467, 533, 536, 625, 722
BlsI GCNGC 7 cut(s) 323, 342, 468, 534, 537, 626, 723
Bme18I GGWCC 2 cut(s) 676, 869
BmeT110I CYCGRG 1 cut(s) 539
BmgBI CACGTC 2 cut(s) 349, 418
BmgT120I GGNCC 3 cut(s) 211, 676, 869
BmiI GGNNCC 7 cut(s) 61, 381, 456, 887, 987, 1001, 1108
BmsI GCATC 2 cut(s) 599, 1150
BpmI CTGGAG 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 814
Bsa29I ATCGAT 1 cut(s) 593
BsaAI YACGTR 2 cut(s) 52, 489
BsaHI GRCGYC 4 cut(s) 5, 60, 223, 429
BsaI GGTCTC 2 cut(s) 33, 1052
BsaJI CCNNGG 4 cut(s) 424, 458, 672, 679
BsaWI WCCGGW 1 cut(s) 12
Bsc4I CCNNNNNNNGG 2 cut(s) 393, 1182
Bse118I RCCGGY 5 cut(s) 28, 42, 62, 807, 1115
Bse1I ACTGG 3 cut(s) 358, 872, 1142
Bse3DI GCAATG 2 cut(s) 224, 886
BseAI TCCGGA 1 cut(s) 12
BseCI ATCGAT 1 cut(s) 593
BseDI CCNNGG 4 cut(s) 424, 458, 672, 679
BseGI GGATG 1 cut(s) 905
BseLI CCNNNNNNNGG 2 cut(s) 393, 1182
BseMI GCAATG 2 cut(s) 224, 886
BseNI ACTGG 3 cut(s) 358, 872, 1142
BseRI GAGGAG 1 cut(s) 454
BseX3I CGGCCG 2 cut(s) 44, 384
BseXI GCAGC 4 cut(s) 333, 478, 522, 544
BseYI CCCAGC 1 cut(s) 1111
Bsh1236I CGCG 1 cut(s) 377
Bsh1285I CGRYCG 2 cut(s) 47, 387
BshFI GGCC 7 cut(s) 46, 213, 276, 291, 386, 509, 823
BshNI GGYRCC 4 cut(s) 59, 454, 999, 1106
BshVI ATCGAT 1 cut(s) 593
BsiEI CGRYCG 2 cut(s) 47, 387
BsiHKAI GWGCWC 1 cut(s) 714
BsiHKCI CYCGRG 1 cut(s) 539
BsiSI CCGG 9 cut(s) 13, 29, 43, 63, 166, 180, 383, 808, 1116
BsiWI CGTACG 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 393, 1182
BsmAI GTCTC 4 cut(s) 33, 593, 792, 1052
BsmBI CGTCTC 1 cut(s) 593
BsnI GGCC 7 cut(s) 46, 213, 276, 291, 386, 509, 823
Bso31I GGTCTC 2 cut(s) 33, 1052
BsoBI CYCGRG 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 714
Bsp13I TCCGGA 1 cut(s) 12
Bsp143I GATC 6 cut(s) 9, 141, 379, 403, 787, 985
BspANI GGCC 7 cut(s) 46, 213, 276, 291, 386, 509, 823
BspDI ATCGAT 1 cut(s) 593
BspEI TCCGGA 1 cut(s) 12
BspFNI CGCG 1 cut(s) 377
BspLI GGNNCC 7 cut(s) 61, 381, 456, 887, 987, 1001, 1108
BspMAI CTGCAG 2 cut(s) 507, 1197
BspMI ACCTGC 1 cut(s) 204
BspPI GGATC 6 cut(s) 4, 136, 374, 387, 980, 993
BspQI GCTCTTC 2 cut(s) 254, 614
BspT107I GGYRCC 4 cut(s) 59, 454, 999, 1106
BspTNI GGTCTC 2 cut(s) 33, 1052
BsrBI CCGCTC 2 cut(s) 624, 721
BsrDI GCAATG 2 cut(s) 224, 886
BsrFI RCCGGY 5 cut(s) 28, 42, 62, 807, 1115
BsrI ACTGG 3 cut(s) 358, 872, 1142
BssAI RCCGGY 5 cut(s) 28, 42, 62, 807, 1115
BssECI CCNNGG 4 cut(s) 424, 458, 672, 679
BssMI GATC 6 cut(s) 9, 141, 379, 403, 787, 985
BssNI GRCGYC 4 cut(s) 5, 60, 223, 429
BssT1I CCWWGG 1 cut(s) 672
Bst4CI ACNGT 2 cut(s) 285, 1039
Bst6I CTCTTC 2 cut(s) 254, 614
BstACI GRCGYC 4 cut(s) 5, 60, 223, 429
BstAPI GCANNNNNTGC 1 cut(s) 1192
BstBAI YACGTR 2 cut(s) 52, 489
BstC8I GCNNGC 7 cut(s) 30, 64, 215, 245, 507, 1117, 1184
BstDEI CTNAG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 905
BstFNI CGCG 1 cut(s) 377
BstH2I RGCGCY 3 cut(s) 63, 172, 672
BstHHI GCGC 3 cut(s) 62, 171, 671
BstKTI GATC 6 cut(s) 12, 144, 382, 406, 790, 988
BstMAI GTCTC 4 cut(s) 33, 593, 792, 1052
BstMBI GATC 6 cut(s) 9, 141, 379, 403, 787, 985
BstMCI CGRYCG 2 cut(s) 47, 387
BstMWI GCNNNNNNNGC 8 cut(s) 383, 463, 506, 541, 718, 727, 885, 1192
BstSFI CTRYAG 3 cut(s) 235, 503, 1193
BstSNI TACGTA 1 cut(s) 489
BstUI CGCG 1 cut(s) 377
BstV1I GCAGC 4 cut(s) 333, 478, 522, 544
BstX2I RGATCY 3 cut(s) 379, 403, 985
BstXI CCANNNNNNTGG 3 cut(s) 564, 896, 996
BstYI RGATCY 3 cut(s) 379, 403, 985
BstZI CGGCCG 2 cut(s) 44, 384
Bsu15I ATCGAT 1 cut(s) 593
BsuRI GGCC 7 cut(s) 46, 213, 276, 291, 386, 509, 823
BsuTUI ATCGAT 1 cut(s) 593
BtgZI GCGATG 1 cut(s) 1009
BtrI CACGTC 2 cut(s) 349, 418
BtsCI GGATG 1 cut(s) 905
BtsI GCAGTG 3 cut(s) 500, 557, 699
BtsIMutI CAGTG 5 cut(s) 84, 500, 557, 699, 1044
BveI ACCTGC 1 cut(s) 204
Cac8I GCNNGC 7 cut(s) 30, 64, 215, 245, 507, 1117, 1184
CfoI GCGC 3 cut(s) 62, 171, 671
Cfr10I RCCGGY 5 cut(s) 28, 42, 62, 807, 1115
Cfr13I GGNCC 3 cut(s) 211, 676, 869
ClaI ATCGAT 1 cut(s) 593
CseI GACGC 2 cut(s) 212, 418
Csp6I GTAC 4 cut(s) 49, 490, 548, 1107
CviAII CATG 1 cut(s) 941
CviQI GTAC 4 cut(s) 49, 490, 548, 1107
DdeI CTNAG 1 cut(s) 259
DinI GGCGCC 1 cut(s) 61
DpnI GATC 6 cut(s) 11, 143, 381, 405, 789, 987
DpnII GATC 6 cut(s) 9, 141, 379, 403, 787, 985
EaeI YGGCCR 3 cut(s) 44, 289, 384
EagI CGGCCG 2 cut(s) 44, 384
Eam1104I CTCTTC 2 cut(s) 254, 614
EarI CTCTTC 2 cut(s) 254, 614
EciI GGCGGA 3 cut(s) 114, 543, 620
EclXI CGGCCG 2 cut(s) 44, 384
Eco105I TACGTA 1 cut(s) 489
Eco130I CCWWGG 1 cut(s) 672
Eco147I AGGCCT 1 cut(s) 509
Eco31I GGTCTC 2 cut(s) 33, 1052
Eco47I GGWCC 2 cut(s) 676, 869
Eco52I CGGCCG 2 cut(s) 44, 384
Eco88I CYCGRG 1 cut(s) 539
EcoT14I CCWWGG 1 cut(s) 672
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 672
Esp3I CGTCTC 1 cut(s) 593
FaeI CATG 1 cut(s) 944
FatI CATG 1 cut(s) 940
FauI CCCGC 1 cut(s) 390
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 7 cut(s) 322, 341, 467, 533, 536, 625, 722
FokI GGATG 1 cut(s) 912
Fsp4HI GCNGC 7 cut(s) 322, 341, 467, 533, 536, 625, 722
FspBI CTAG 2 cut(s) 114, 666
GlaI GCGC 3 cut(s) 61, 170, 670
GluI GCNGC 7 cut(s) 322, 341, 467, 533, 536, 625, 722
GsaI CCCAGC 1 cut(s) 1115
GsuI CTGGAG 1 cut(s) 91
HaeII RGCGCY 3 cut(s) 63, 172, 672
HaeIII GGCC 7 cut(s) 46, 213, 276, 291, 386, 509, 823
HapII CCGG 9 cut(s) 13, 29, 43, 63, 166, 180, 383, 808, 1116
HgaI GACGC 2 cut(s) 212, 418
HhaI GCGC 3 cut(s) 62, 171, 671
Hin1I GRCGYC 4 cut(s) 5, 60, 223, 429
Hin1II CATG 1 cut(s) 944
Hin6I GCGC 3 cut(s) 60, 169, 669
HinP1I GCGC 3 cut(s) 60, 169, 669
HincII GTYRAC 3 cut(s) 160, 298, 415
HindII GTYRAC 3 cut(s) 160, 298, 415
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 2 cut(s) 310, 1093
HpaII CCGG 9 cut(s) 13, 29, 43, 63, 166, 180, 383, 808, 1116
HphI GGTGA 2 cut(s) 151, 185
Hpy166II GTNNAC 5 cut(s) 55, 160, 298, 415, 745
Hpy188I TCNGA 2 cut(s) 38, 693
Hpy188III TCNNGA 2 cut(s) 13, 114
Hpy8I GTNNAC 5 cut(s) 55, 160, 298, 415, 745
HpyAV CCTTC 4 cut(s) 160, 860, 1036, 1097
HpyCH4III ACNGT 2 cut(s) 285, 1039
HpyCH4IV ACGT 6 cut(s) 51, 162, 294, 348, 417, 488
HpyCH4V TGCA 3 cut(s) 505, 879, 1195
HpyF10VI GCNNNNNNNGC 8 cut(s) 383, 463, 506, 541, 718, 727, 885, 1192
HpyF3I CTNAG 1 cut(s) 259
HpySE526I ACGT 6 cut(s) 51, 162, 294, 348, 417, 488
Hsp92I GRCGYC 4 cut(s) 5, 60, 223, 429
Hsp92II CATG 1 cut(s) 944
HspAI GCGC 3 cut(s) 60, 169, 669
KasI GGCGCC 1 cut(s) 59
Kpn2I TCCGGA 1 cut(s) 12
KpnI GGTACC 1 cut(s) 1110
KroI GCCGGC 3 cut(s) 28, 62, 1115
KroNI GCCGGC 3 cut(s) 30, 64, 1117
Kzo9I GATC 6 cut(s) 9, 141, 379, 403, 787, 985
LguI GCTCTTC 2 cut(s) 254, 614
LmnI GCTCC 2 cut(s) 709, 885
Lsp1109I GCAGC 4 cut(s) 333, 478, 522, 544
LweI GCATC 2 cut(s) 599, 1150
MaeI CTAG 2 cut(s) 114, 666
MaeII ACGT 6 cut(s) 51, 162, 294, 348, 417, 488
MalI GATC 6 cut(s) 11, 143, 381, 405, 789, 987
MbiI CCGCTC 2 cut(s) 624, 721
MboI GATC 6 cut(s) 9, 141, 379, 403, 787, 985
MboII GAAGA 6 cut(s) 241, 244, 247, 413, 631, 1097
MflI RGATCY 3 cut(s) 379, 403, 985
MhlI GDGCHC 1 cut(s) 714
MluCI AATT 4 cut(s) 325, 658, 1020, 1028
Mly113I GGCGCC 1 cut(s) 60
MlyI GAGTC 1 cut(s) 1102
MmeI TCCRAC 2 cut(s) 687, 877
MreI CGCCGGCG 1 cut(s) 28
MroI TCCGGA 1 cut(s) 12
MroNI GCCGGC 3 cut(s) 28, 62, 1115
MseI TTAA 2 cut(s) 518, 966
MslI CAYNNNNRTG 3 cut(s) 351, 562, 909
MspA1I CMGCKG 2 cut(s) 469, 535
MspI CCGG 9 cut(s) 13, 29, 43, 63, 166, 180, 383, 808, 1116
MvnI CGCG 1 cut(s) 377
MwoI GCNNNNNNNGC 8 cut(s) 383, 463, 506, 541, 718, 727, 885, 1192
NaeI GCCGGC 3 cut(s) 30, 64, 1117
NarI GGCGCC 1 cut(s) 60
NdeII GATC 6 cut(s) 9, 141, 379, 403, 787, 985
NgoMIV GCCGGC 3 cut(s) 28, 62, 1115
NlaIII CATG 1 cut(s) 944
NlaIV GGNNCC 7 cut(s) 61, 381, 456, 887, 987, 1001, 1108
NmeAIII GCCGAG 3 cut(s) 252, 405, 483
PaqCI CACCTGC 1 cut(s) 204
PceI AGGCCT 1 cut(s) 509
PciSI GCTCTTC 2 cut(s) 254, 614
PcsI WCGNNNNNNNCGW 5 cut(s) 153, 159, 300, 414, 756
PdiI GCCGGC 3 cut(s) 30, 64, 1117
PfeI GAWTC 1 cut(s) 310
Pfl23II CGTACG 1 cut(s) 48
PflMI CCANNNNNTGG 1 cut(s) 1182
PkrI GCNGC 7 cut(s) 323, 342, 468, 534, 537, 626, 723
PleI GAGTC 1 cut(s) 1101
PluTI GGCGCC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 1101
Ppu21I YACGTR 2 cut(s) 52, 489
PspFI CCCAGC 1 cut(s) 1111
PspLI CGTACG 1 cut(s) 48
PspN4I GGNNCC 7 cut(s) 61, 381, 456, 887, 987, 1001, 1108
PspPI GGNCC 3 cut(s) 211, 676, 869
PstI CTGCAG 2 cut(s) 507, 1197
PsuI RGATCY 3 cut(s) 379, 403, 985
PvuII CAGCTG 2 cut(s) 469, 535
RsaI GTAC 4 cut(s) 50, 491, 549, 1108
RsaNI GTAC 4 cut(s) 49, 490, 548, 1107
RseI CAYNNNNRTG 3 cut(s) 351, 562, 909
SalI GTCGAC 1 cut(s) 413
SapI GCTCTTC 2 cut(s) 254, 614
SaqAI TTAA 2 cut(s) 518, 966
SatI GCNGC 7 cut(s) 322, 341, 467, 533, 536, 625, 722
Sau3AI GATC 6 cut(s) 9, 141, 379, 403, 787, 985
Sau96I GGNCC 3 cut(s) 211, 676, 869
SchI GAGTC 1 cut(s) 1102
SduI GDGCHC 1 cut(s) 714
SfaNI GCATC 2 cut(s) 599, 1150
SfcI CTRYAG 3 cut(s) 235, 503, 1193
SfoI GGCGCC 1 cut(s) 61
SgrAI CRCCGGYG 1 cut(s) 28
SgrDI CGTCGACG 1 cut(s) 413
SinI GGWCC 2 cut(s) 676, 869
SmiMI CAYNNNNRTG 3 cut(s) 351, 562, 909
SmlI CTYRAG 1 cut(s) 793
SmoI CTYRAG 1 cut(s) 793
SnaBI TACGTA 1 cut(s) 489
Sse9I AATT 4 cut(s) 325, 658, 1020, 1028
SseBI AGGCCT 1 cut(s) 509
SspDI GGCGCC 1 cut(s) 59
SspI AATATT 1 cut(s) 978
SspMI CTAG 2 cut(s) 114, 666
StuI AGGCCT 1 cut(s) 509
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 2 cut(s) 285, 1039
TaiI ACGT 6 cut(s) 54, 165, 297, 351, 420, 491
TaqII GACCGA 1 cut(s) 693
TasI AATT 4 cut(s) 325, 658, 1020, 1028
TauI GCSGC 3 cut(s) 343, 627, 724
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 2 cut(s) 518, 966
Tru9I TTAA 2 cut(s) 518, 966
TscAI CASTG 5 cut(s) 84, 507, 564, 706, 1044
TseI GCWGC 4 cut(s) 321, 466, 532, 535
TspDTI ATGAA 2 cut(s) 929, 1148
TspRI CASTG 5 cut(s) 84, 507, 564, 706, 1044
Van91I CCANNNNNTGG 1 cut(s) 1182
VpaK11BI GGWCC 2 cut(s) 676, 869
XbaI TCTAGA 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 2 cut(s) 114, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.