MD15G1393400.v1.1

Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
49052696 .. 49056021
3326 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1393400.v1.1.491

Sequence Viewer

Length: 1326 bp
ATGGCGTCAATCCGGAGAACTCTATCGCCGGCCTTCCAAGACCGGCAGTACTTGAACGGAGGCGGCTCTCCATTTTCAGTGCCATCGCCGTCGCAGAAGCTTCTCTCCAGCTCCAGATACTCGCCGCCTTTTCCATCGGCGATTCTCGCCTTCTCCGTCTCCGTCCGGAGCTTCGTCGCGGGAGTTCTCTTTCACCGACCTAATCGCAAAGGTCAGCAATGGCGTCGAGGATTCTACAGGTGCTTGCTCTTCTTCTTCTTAGGGTTTTTACTCGGCCTATTGCCGTTCGGCCACGTTGACGACGACGAGATTCGAGGTCGGAGCTTCAATTTCGACATCAAGCCGCCGCACGTCAATGTCCAGCTCGACACCGACAACGCGGATCGCGCAGTGAAACGGATGAATGTGCAGTTCAACACCGACAACGCGGATCGCGCAGAGAAACGGAGGAATGTCCAGTTCGACACCGACAACGCGGATCGCACAGTGAAACGGAGGGAAGATCTCGTCGACGTGAGGCTCGGCGTCGTGGAGAGGAGGGTGGATTTGGTGCCGAGGAAGCTGCTGATTATTGTGACGCCGACGTACAACCGTGCACTGCAGGCCTACTTCTTAAACAGGTTGGGGCAGCTGCTGGGGCTTGTACCTCGGCCACTGCTTTGGATTATGGTGGAGACCAACGCTGCGTCGATGGAGACAGCGGAGATTTTGAGGAAGAGCGGCGTGATGTATAGGCATTTGGTGTGCGGCAACAATTCGACTACGGCCAAGGACCGGGGTGTTTATCAGAGAAACACTGCTTTGGAGCACATTGAGCGGCATAGGCTTGATGGCATTGTTTACTTTGCAGACGACGATAATATATACTCCCTCGACTTGTTTGATCGCTTGAGAGACATTAGCCGATTTGGAACTTGGCCTGTTGCTATGTTAGCTCAAAGCAAAAACAAGGCGATATTGGAAGGTCCAGTATGCAATCGGAGCCAAGTAGTCGGATGGCACACAAATGAGAAAAGCAAAAGACTTCGTAGGTTTCATGTTGATATGTCAGGGTTTGCATTTAATAGCACAGTATTATGGGATCCAAAGAGATGGCACCGCCCCACTTCTGCTCCAATTCGACAATTAGATACAGTGAAGGAGGGTTTCCAAGAGACCACTTTTATAGAACAAGTTGTGGAAGATGAGAGTCAAATGGAAGGTACCCCAGCCGGCTGTTCAAAAGTAATGAACTGGCATCTTCATTTGGAAGCTCATAGTCTTGTTTATCCCAAAGGCTGGCAACTTGCGAACAACCTTGATGTTGTTCTCCCCATTGAACGATAG

Protein Analysis

442

Amino Acids

50.67

Weight (kDa)

9.66

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_43 PF03360 208 - 417 1.5e-73 Glycosyltransferase family 43
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009920)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1202
AccB1I GGYRCC 3 cut(s) 550, 1095, 1202
AccB7I CCANNNNNTGG 1 cut(s) 1278
AccBSI CCGCTC 2 cut(s) 720, 817
AccI GTMKAC 1 cut(s) 510
AccII CGCG 6 cut(s) 179, 380, 387, 428, 435, 476
AccIII TCCGGA 2 cut(s) 12, 165
AclWI GGATC 5 cut(s) 390, 438, 486, 1076, 1089
AcoI YGGCCR 3 cut(s) 289, 650, 765
AcyI GRCGYC 4 cut(s) 5, 223, 525, 578
AfaI GTAC 4 cut(s) 50, 587, 645, 1204
AfiI CCNNNNNNNGG 2 cut(s) 774, 1278
AgsI TTSAA 5 cut(s) 55, 328, 415, 1221, 1319
AjiI CACGTC 2 cut(s) 352, 514
AluBI AGCT 9 cut(s) 100, 111, 171, 324, 364, 562, 631, 935, 1253
AluI AGCT 9 cut(s) 100, 111, 171, 324, 364, 562, 631, 935, 1253
Alw21I GWGCWC 2 cut(s) 598, 810
Alw26I GTCTC 5 cut(s) 163, 668, 689, 888, 1148
Alw44I GTGCAC 1 cut(s) 594
AlwI GGATC 5 cut(s) 390, 438, 486, 1076, 1089
AlwNI CAGNNNCTG 1 cut(s) 634
Aor13HI TCCGGA 2 cut(s) 12, 165
AoxI GGCC 7 cut(s) 30, 274, 289, 603, 650, 765, 917
ApaLI GTGCAC 1 cut(s) 594
ApeKI GCWGC 4 cut(s) 562, 628, 631, 683
Asp718I GGTACC 1 cut(s) 1202
AspLEI GCGC 2 cut(s) 389, 437
AspS9I GGNCC 2 cut(s) 772, 965
AsuC2I CCSGG 1 cut(s) 776
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 2 cut(s) 772, 965
BaeGI GKGCMC 1 cut(s) 598
BamHI GGATCC 1 cut(s) 1081
BanI GGYRCC 3 cut(s) 550, 1095, 1202
Bbv12I GWGCWC 2 cut(s) 598, 810
BbvI GCAGC 4 cut(s) 549, 618, 640, 670
BccI CCATC 6 cut(s) 91, 142, 685, 824, 990, 1086
BceAI ACGGC 3 cut(s) 73, 268, 780
BcgI CGANNNNNNTGC 4 cut(s) 206, 240, 544, 578
BcnI CCSGG 1 cut(s) 776
BcoDI GTCTC 5 cut(s) 163, 668, 689, 888, 1148
BfmI CTRYAG 2 cut(s) 235, 599
BglII AGATCT 1 cut(s) 502
BmcAI AGTACT 1 cut(s) 50
Bme1390I CCNGG 1 cut(s) 776
Bme18I GGWCC 2 cut(s) 772, 965
BmgBI CACGTC 2 cut(s) 352, 514
BmgT120I GGNCC 2 cut(s) 772, 965
BmiI GGNNCC 5 cut(s) 552, 983, 1083, 1097, 1204
BmrFI CCNGG 1 cut(s) 776
BmsI GCATC 1 cut(s) 1246
BpmI CTGGAG 2 cut(s) 91, 97
BpuEI CTTGAG 1 cut(s) 910
BpuMI CCSGG 1 cut(s) 776
BsaHI GRCGYC 4 cut(s) 5, 223, 525, 578
BsaI GGTCTC 2 cut(s) 668, 1148
BsaJI CCNNGG 4 cut(s) 554, 647, 768, 775
BsaWI WCCGGW 2 cut(s) 12, 165
BsaXI ACNNNNNCTCC 2 cut(s) 1096, 1126
Bsc4I CCNNNNNNNGG 2 cut(s) 774, 1278
Bse118I RCCGGY 3 cut(s) 28, 42, 1211
Bse1I ACTGG 3 cut(s) 457, 968, 1238
Bse3DI GCAATG 1 cut(s) 224
BseAI TCCGGA 2 cut(s) 12, 165
BseDI CCNNGG 4 cut(s) 554, 647, 768, 775
BseGI GGATG 2 cut(s) 405, 1001
BseLI CCNNNNNNNGG 2 cut(s) 774, 1278
BseMI GCAATG 1 cut(s) 224
BseNI ACTGG 3 cut(s) 457, 968, 1238
BseRI GAGGAG 1 cut(s) 550
BseSI GKGCMC 1 cut(s) 598
BseXI GCAGC 4 cut(s) 549, 618, 640, 670
BseYI CCCAGC 2 cut(s) 634, 1207
BsgI GTGCAG 1 cut(s) 428
Bsh1236I CGCG 6 cut(s) 179, 380, 387, 428, 435, 476
BshFI GGCC 7 cut(s) 32, 276, 291, 605, 652, 767, 919
BshNI GGYRCC 3 cut(s) 550, 1095, 1202
BsiHKAI GWGCWC 2 cut(s) 598, 810
BsiSI CCGG 6 cut(s) 13, 29, 43, 166, 775, 1212
BslI CCNNNNNNNGG 2 cut(s) 774, 1278
BsmAI GTCTC 5 cut(s) 163, 668, 689, 888, 1148
BsmBI CGTCTC 1 cut(s) 163
BsnI GGCC 7 cut(s) 32, 276, 291, 605, 652, 767, 919
Bso31I GGTCTC 2 cut(s) 668, 1148
Bsp1286I GDGCHC 2 cut(s) 598, 810
Bsp13I TCCGGA 2 cut(s) 12, 165
Bsp143I GATC 6 cut(s) 382, 430, 478, 502, 883, 1081
BspANI GGCC 7 cut(s) 32, 276, 291, 605, 652, 767, 919
BspEI TCCGGA 2 cut(s) 12, 165
BspFNI CGCG 6 cut(s) 179, 380, 387, 428, 435, 476
BspLI GGNNCC 5 cut(s) 552, 983, 1083, 1097, 1204
BspMAI CTGCAG 1 cut(s) 603
BspPI GGATC 5 cut(s) 390, 438, 486, 1076, 1089
BspQI GCTCTTC 2 cut(s) 254, 710
BspT107I GGYRCC 3 cut(s) 550, 1095, 1202
BspTNI GGTCTC 2 cut(s) 668, 1148
BsrBI CCGCTC 2 cut(s) 720, 817
BsrDI GCAATG 1 cut(s) 224
BsrFI RCCGGY 3 cut(s) 28, 42, 1211
BsrI ACTGG 3 cut(s) 457, 968, 1238
BssAI RCCGGY 3 cut(s) 28, 42, 1211
BssECI CCNNGG 4 cut(s) 554, 647, 768, 775
BssMI GATC 6 cut(s) 382, 430, 478, 502, 883, 1081
BssNI GRCGYC 4 cut(s) 5, 223, 525, 578
BssT1I CCWWGG 1 cut(s) 768
Bst4CI ACNGT 4 cut(s) 487, 593, 1072, 1135
Bst6I CTCTTC 2 cut(s) 254, 710
BstACI GRCGYC 4 cut(s) 5, 223, 525, 578
BstC8I GCNNGC 5 cut(s) 30, 245, 603, 1213, 1280
BstDEI CTNAG 1 cut(s) 259
BstF5I GGATG 2 cut(s) 405, 1001
BstFNI CGCG 6 cut(s) 179, 380, 387, 428, 435, 476
BstHHI GCGC 2 cut(s) 389, 437
BstKTI GATC 6 cut(s) 385, 433, 481, 505, 886, 1084
BstMAI GTCTC 5 cut(s) 163, 668, 689, 888, 1148
BstMBI GATC 6 cut(s) 382, 430, 478, 502, 883, 1081
BstSCI CCNGG 1 cut(s) 774
BstSFI CTRYAG 2 cut(s) 235, 599
BstSLI GKGCMC 1 cut(s) 598
BstUI CGCG 6 cut(s) 179, 380, 387, 428, 435, 476
BstV1I GCAGC 4 cut(s) 549, 618, 640, 670
BstX2I RGATCY 2 cut(s) 502, 1081
BstXI CCANNNNNNTGG 2 cut(s) 660, 1092
BstYI RGATCY 2 cut(s) 502, 1081
BsuRI GGCC 7 cut(s) 32, 276, 291, 605, 652, 767, 919
BtgZI GCGATG 1 cut(s) 69
BtrI CACGTC 2 cut(s) 352, 514
BtsCI GGATG 2 cut(s) 405, 1001
BtsI GCAGTG 4 cut(s) 396, 596, 653, 795
BtsIMutI CAGTG 7 cut(s) 84, 396, 492, 596, 653, 795, 1140
Cac8I GCNNGC 5 cut(s) 30, 245, 603, 1213, 1280
CaiI CAGNNNCTG 1 cut(s) 634
CfoI GCGC 2 cut(s) 389, 437
Cfr10I RCCGGY 3 cut(s) 28, 42, 1211
Cfr13I GGNCC 2 cut(s) 772, 965
CseI GACGC 4 cut(s) 212, 514, 586, 675
Csp6I GTAC 4 cut(s) 49, 586, 644, 1203
CviAII CATG 1 cut(s) 1037
CviQI GTAC 4 cut(s) 49, 586, 644, 1203
DdeI CTNAG 1 cut(s) 259
DpnI GATC 6 cut(s) 384, 432, 480, 504, 885, 1083
DpnII GATC 6 cut(s) 382, 430, 478, 502, 883, 1081
EaeI YGGCCR 3 cut(s) 289, 650, 765
Eam1104I CTCTTC 2 cut(s) 254, 710
EarI CTCTTC 2 cut(s) 254, 710
Eco130I CCWWGG 1 cut(s) 768
Eco147I AGGCCT 1 cut(s) 605
Eco31I GGTCTC 2 cut(s) 668, 1148
Eco47I GGWCC 2 cut(s) 772, 965
EcoT14I CCWWGG 1 cut(s) 768
ErhI CCWWGG 1 cut(s) 768
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 1 cut(s) 1040
FatI CATG 1 cut(s) 1036
FauI CCCGC 1 cut(s) 172
FblI GTMKAC 1 cut(s) 510
FokI GGATG 2 cut(s) 412, 1008
GlaI GCGC 2 cut(s) 388, 436
GsaI CCCAGC 2 cut(s) 638, 1211
GsuI CTGGAG 2 cut(s) 91, 97
HaeIII GGCC 7 cut(s) 32, 276, 291, 605, 652, 767, 919
HapII CCGG 6 cut(s) 13, 29, 43, 166, 775, 1212
HgaI GACGC 4 cut(s) 212, 514, 586, 675
HhaI GCGC 2 cut(s) 389, 437
Hin1I GRCGYC 4 cut(s) 5, 223, 525, 578
Hin1II CATG 1 cut(s) 1040
Hin6I GCGC 2 cut(s) 387, 435
HinP1I GCGC 2 cut(s) 387, 435
HincII GTYRAC 2 cut(s) 298, 511
HindII GTYRAC 2 cut(s) 298, 511
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 4 cut(s) 142, 231, 310, 1189
HpaII CCGG 6 cut(s) 13, 29, 43, 166, 775, 1212
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 4 cut(s) 298, 511, 596, 841
Hpy188I TCNGA 4 cut(s) 321, 789, 981, 995
Hpy188III TCNNGA 3 cut(s) 13, 114, 166
Hpy8I GTNNAC 4 cut(s) 298, 511, 596, 841
HpyAV CCTTC 5 cut(s) 43, 160, 956, 1132, 1193
HpyCH4III ACNGT 4 cut(s) 487, 593, 1072, 1135
HpyCH4IV ACGT 4 cut(s) 294, 351, 513, 584
HpyCH4V TGCA 6 cut(s) 409, 596, 601, 848, 975, 1058
HpyF3I CTNAG 1 cut(s) 259
HpySE526I ACGT 4 cut(s) 294, 351, 513, 584
Hsp92I GRCGYC 4 cut(s) 5, 223, 525, 578
Hsp92II CATG 1 cut(s) 1040
HspAI GCGC 2 cut(s) 387, 435
Kpn2I TCCGGA 2 cut(s) 12, 165
KpnI GGTACC 1 cut(s) 1206
KroI GCCGGC 2 cut(s) 28, 1211
KroNI GCCGGC 2 cut(s) 30, 1213
Kzo9I GATC 6 cut(s) 382, 430, 478, 502, 883, 1081
LguI GCTCTTC 2 cut(s) 254, 710
LmnI GCTCC 6 cut(s) 116, 168, 321, 805, 981, 1117
Lsp1109I GCAGC 4 cut(s) 549, 618, 640, 670
LweI GCATC 1 cut(s) 1246
MaeII ACGT 4 cut(s) 294, 351, 513, 584
MaeIII GTNAC 1 cut(s) 574
MalI GATC 6 cut(s) 384, 432, 480, 504, 885, 1083
MbiI CCGCTC 2 cut(s) 720, 817
MboI GATC 6 cut(s) 382, 430, 478, 502, 883, 1081
MboII GAAGA 7 cut(s) 241, 244, 247, 512, 727, 1193, 1232
MflI RGATCY 2 cut(s) 502, 1081
MhlI GDGCHC 2 cut(s) 598, 810
MluCI AATT 4 cut(s) 328, 754, 1116, 1124
MlyI GAGTC 1 cut(s) 1198
MmeI TCCRAC 2 cut(s) 299, 973
MroI TCCGGA 2 cut(s) 12, 165
MroNI GCCGGC 2 cut(s) 28, 1211
MseI TTAA 2 cut(s) 614, 1062
MslI CAYNNNNRTG 2 cut(s) 354, 1005
MspA1I CMGCKG 2 cut(s) 631, 701
MspI CCGG 6 cut(s) 13, 29, 43, 166, 775, 1212
MspR9I CCNGG 1 cut(s) 776
MvnI CGCG 6 cut(s) 179, 380, 387, 428, 435, 476
NaeI GCCGGC 2 cut(s) 30, 1213
NciI CCSGG 1 cut(s) 776
NdeII GATC 6 cut(s) 382, 430, 478, 502, 883, 1081
NgoMIV GCCGGC 2 cut(s) 28, 1211
NlaIII CATG 1 cut(s) 1040
NlaIV GGNNCC 5 cut(s) 552, 983, 1083, 1097, 1204
NmeAIII GCCGAG 4 cut(s) 252, 501, 579, 628
NmuCI GTSAC 1 cut(s) 574
PceI AGGCCT 1 cut(s) 605
PciSI GCTCTTC 2 cut(s) 254, 710
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 300
PdiI GCCGGC 2 cut(s) 30, 1213
PfeI GAWTC 3 cut(s) 142, 231, 310
PflMI CCANNNNNTGG 1 cut(s) 1278
PleI GAGTC 1 cut(s) 1197
PpsI GAGTC 1 cut(s) 1197
PspFI CCCAGC 2 cut(s) 634, 1207
PspN4I GGNNCC 5 cut(s) 552, 983, 1083, 1097, 1204
PspPI GGNCC 2 cut(s) 772, 965
PstI CTGCAG 1 cut(s) 603
PstNI CAGNNNCTG 1 cut(s) 634
PsuI RGATCY 2 cut(s) 502, 1081
PvuII CAGCTG 1 cut(s) 631
RsaI GTAC 4 cut(s) 50, 587, 645, 1204
RsaNI GTAC 4 cut(s) 49, 586, 644, 1203
RseI CAYNNNNRTG 2 cut(s) 354, 1005
SalI GTCGAC 1 cut(s) 509
SapI GCTCTTC 2 cut(s) 254, 710
SaqAI TTAA 2 cut(s) 614, 1062
Sau3AI GATC 6 cut(s) 382, 430, 478, 502, 883, 1081
Sau96I GGNCC 2 cut(s) 772, 965
ScaI AGTACT 1 cut(s) 50
SchI GAGTC 1 cut(s) 1198
ScrFI CCNGG 1 cut(s) 776
SduI GDGCHC 2 cut(s) 598, 810
SfaNI GCATC 1 cut(s) 1246
SfcI CTRYAG 2 cut(s) 235, 599
SgrDI CGTCGACG 1 cut(s) 509
SinI GGWCC 2 cut(s) 772, 965
SmiMI CAYNNNNRTG 2 cut(s) 354, 1005
SmlI CTYRAG 1 cut(s) 889
SmoI CTYRAG 1 cut(s) 889
Sse9I AATT 4 cut(s) 328, 754, 1116, 1124
SseBI AGGCCT 1 cut(s) 605
StuI AGGCCT 1 cut(s) 605
StyD4I CCNGG 1 cut(s) 774
StyI CCWWGG 1 cut(s) 768
TaaI ACNGT 4 cut(s) 487, 593, 1072, 1135
TaiI ACGT 4 cut(s) 297, 354, 516, 587
TasI AATT 4 cut(s) 328, 754, 1116, 1124
TatI WGTACW 1 cut(s) 48
TauI GCSGC 7 cut(s) 66, 127, 346, 349, 723, 750, 820
TfiI GAWTC 3 cut(s) 142, 231, 310
Tru1I TTAA 2 cut(s) 614, 1062
Tru9I TTAA 2 cut(s) 614, 1062
TscAI CASTG 7 cut(s) 84, 396, 492, 603, 660, 802, 1140
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 4 cut(s) 562, 628, 631, 683
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 4 cut(s) 416, 1025, 1232, 1244
TspGWI ACGGA 6 cut(s) 72, 145, 151, 412, 460, 508
TspRI CASTG 7 cut(s) 84, 396, 492, 603, 660, 802, 1140
Van91I CCANNNNNTGG 1 cut(s) 1278
VneI GTGCAC 1 cut(s) 594
VpaK11BI GGWCC 2 cut(s) 772, 965
XmiI GTMKAC 1 cut(s) 510
ZrmI AGTACT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.