Prupe.1G541800_v2.0.a1

Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
44255390 .. 44258865
3476 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G541800.1

Sequence Viewer

Length: 1233 bp
ATGGCGTCGATCCGGCGAACTCTATCGCCGGCGTTCAGAGACCGGCCGTACGTGAACGGCGTCGGGTCTCCATTTTCGGTACAATCGCCGTCGCCGAAGCTTCTGTCCAGCTCCAGATATTCACCCCCTTTTCCGTCGGCGATTCTCGCCTTCACCGTCACCATCCGGCGCTTCGTCGCCGGAGTTCTTTTCCACCGACCTAATCGCAAAGGCCAGCAATGGCGTCGAGTGTTCTACAGGTGCTTGCTCTTCTTCTTCTTAGGGTTTTTGCTCGGTCTGTTGCCGTTCGGCCACGTGGACGACGATGAAGAGATTCGAGGCCGGAGCTTCAATTTCGACATCAAGCCTTCGCACGTTAATGTGCAGTTCGACAACGACAACACGGATCGCGTCGTAAAACGGAGGGAGGATCTCGTCGTCGACGTGAGCCTCGGCGTGGTGGAGAGTAGAGGGGAGTTGGTGCCGAGGAAGCAGCTGATTATTGTGACGCCGACGTACAACCGCGCGCTGCAGGCCTATTTCTTGAACAGGTTGGGGCAGCTGCTGAGGCTTGTACCTCCGCCGCTGCTTTGGATTGTGGTAGAGAACAAAGCGGCGTCGTTTGAGACCGCCGAGATTTTGAGGAAGAGCAGCGTGATGTATAGGCATTTGGTGTGTGGCAACAACTTGACGAGCGCGAAGGACCGAGGCGTGTATCAGAGGAACACGGCGTTGGAGCACATTGAAAGGCATACACTTGATGGCATTGTGTACTTTGCTGATGATGACAATATATACTCGCTCGACTTGTTTGATCGCTTGAGAGACATTAGCCGTTTCGGAACTTGGCCAGTTGCTATGTTAGCACAAAGCAAAAACAAGGCTATATTAGAAGGTCCAGTATGCAATGGGACCCAAGTAATTGGATGGCACACCAATGAGAAAAGCAAGAGACTCCGTAGGTTTCATGTTGATATGTCCGGATTTGCTTTTAATAGCACAATATTGTGGGATCCAAAGAGATGGCACCGCCCCACTTATGTTCCAATTCGACAATTAGACACAGTGAAGGAGGGTTTCCAAGAAACCACTTTTATAGAACAAGTTGTGGAAGATGAAAGACAAATGGAAAGTATGCCAACTGGTTGTTCAAAAGTAATGAACTGGCATCTGCATTTGCAAGCTCATAGTCTTGTTTATCCCAAAGGCTGGCAACTTCAGAAGAACCTAGATATTGTTCTCCCCATTAAATGA

Protein Analysis

411

Amino Acids

47.38

Weight (kDa)

9.69

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009920)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 460, 1005
AccB7I CCANNNNNTGG 1 cut(s) 1188
AccI GTMKAC 1 cut(s) 420
AccII CGCG 4 cut(s) 390, 504, 506, 677
AccIII TCCGGA 1 cut(s) 959
AciI CCGC 6 cut(s) 502, 560, 563, 593, 609, 1009
AclWI GGATC 5 cut(s) 4, 393, 417, 986, 999
AcoI YGGCCR 3 cut(s) 44, 289, 827
AcuI CTGAAG 1 cut(s) 1181
AcvI CACGTG 1 cut(s) 295
AcyI GRCGYC 5 cut(s) 5, 60, 223, 488, 596
AfaI GTAC 5 cut(s) 50, 81, 497, 555, 752
AfiI CCNNNNNNNGG 2 cut(s) 436, 1188
AgsI TTSAA 4 cut(s) 331, 526, 725, 1131
AjiI CACGTC 1 cut(s) 424
AjuI GAANNNNNNNTTGG 4 cut(s) 695, 727, 1111, 1143
AluBI AGCT 6 cut(s) 100, 111, 327, 475, 541, 1163
AluI AGCT 6 cut(s) 100, 111, 327, 475, 541, 1163
Alw21I GWGCWC 1 cut(s) 720
Alw26I GTCTC 5 cut(s) 33, 72, 599, 798, 925
AlwI GGATC 5 cut(s) 4, 393, 417, 986, 999
AlwNI CAGNNNCTG 1 cut(s) 544
Aor13HI TCCGGA 1 cut(s) 959
AoxI GGCC 6 cut(s) 44, 211, 289, 319, 513, 827
ApeKI GCWGC 6 cut(s) 472, 508, 538, 541, 565, 630
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
Asp700I GAANNNNTTC 1 cut(s) 312
AspLEI GCGC 4 cut(s) 171, 506, 508, 677
AspS9I GGNCC 3 cut(s) 682, 875, 891
AsuHPI GGTGA 3 cut(s) 114, 145, 151
AvaII GGWCC 3 cut(s) 682, 875, 891
BalI TGGCCA 1 cut(s) 829
BamHI GGATCC 1 cut(s) 991
BanI GGYRCC 2 cut(s) 460, 1005
BbrPI CACGTG 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 720
BbvCI CCTCAGC 1 cut(s) 545
BbvI GCAGC 6 cut(s) 484, 495, 528, 550, 552, 642
BccI CCATC 4 cut(s) 170, 734, 900, 996
BceAI ACGGC 6 cut(s) 31, 73, 73, 268, 723, 798
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BcoDI GTCTC 5 cut(s) 33, 72, 599, 798, 925
BfaI CTAG 1 cut(s) 1208
BfmI CTRYAG 2 cut(s) 235, 509
BfoI RGCGCY 1 cut(s) 172
BisI GCNGC 8 cut(s) 473, 509, 539, 542, 563, 566, 594, 631
BlsI GCNGC 8 cut(s) 474, 510, 540, 543, 564, 567, 595, 632
Bme18I GGWCC 3 cut(s) 682, 875, 891
BmgBI CACGTC 1 cut(s) 424
BmgT120I GGNCC 3 cut(s) 682, 875, 891
BmiI GGNNCC 5 cut(s) 462, 892, 893, 993, 1007
BmsI GCATC 1 cut(s) 1156
BpmI CTGGAG 1 cut(s) 97
Bpu10I CCTNAGC 1 cut(s) 545
BpuEI CTTGAG 1 cut(s) 820
BsaAI YACGTR 2 cut(s) 52, 295
BsaHI GRCGYC 5 cut(s) 5, 60, 223, 488, 596
BsaI GGTCTC 3 cut(s) 33, 72, 599
BsaJI CCNNGG 3 cut(s) 430, 464, 685
BsaWI WCCGGW 1 cut(s) 959
Bsc4I CCNNNNNNNGG 2 cut(s) 436, 1188
Bse118I RCCGGY 2 cut(s) 28, 42
Bse1I ACTGG 4 cut(s) 830, 878, 1126, 1148
Bse3DI GCAATG 2 cut(s) 224, 892
BseAI TCCGGA 1 cut(s) 959
BseDI CCNNGG 3 cut(s) 430, 464, 685
BseGI GGATG 2 cut(s) 162, 911
BseLI CCNNNNNNNGG 2 cut(s) 436, 1188
BseMI GCAATG 2 cut(s) 224, 892
BseMII CTCAG 1 cut(s) 536
BseNI ACTGG 4 cut(s) 830, 878, 1126, 1148
BsePI GCGCGC 1 cut(s) 504
BseX3I CGGCCG 1 cut(s) 44
BseXI GCAGC 6 cut(s) 484, 495, 528, 550, 552, 642
BsgI GTGCAG 1 cut(s) 383
Bsh1236I CGCG 4 cut(s) 390, 504, 506, 677
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 6 cut(s) 46, 213, 291, 321, 515, 829
BshNI GGYRCC 2 cut(s) 460, 1005
BsiEI CGRYCG 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 720
BsiSI CCGG 7 cut(s) 13, 29, 43, 166, 180, 322, 960
BsiWI CGTACG 1 cut(s) 48
BslFI GGGAC 1 cut(s) 904
BslI CCNNNNNNNGG 2 cut(s) 436, 1188
BsmAI GTCTC 5 cut(s) 33, 72, 599, 798, 925
BsmFI GGGAC 1 cut(s) 904
BsnI GGCC 6 cut(s) 46, 213, 291, 321, 515, 829
Bso31I GGTCTC 3 cut(s) 33, 72, 599
Bsp1286I GDGCHC 1 cut(s) 720
Bsp13I TCCGGA 1 cut(s) 959
Bsp143I GATC 5 cut(s) 9, 385, 409, 793, 991
BspACI CCGC 6 cut(s) 502, 560, 563, 593, 609, 1009
BspANI GGCC 6 cut(s) 46, 213, 291, 321, 515, 829
BspCNI CTCAG 1 cut(s) 537
BspEI TCCGGA 1 cut(s) 959
BspFNI CGCG 4 cut(s) 390, 504, 506, 677
BspLI GGNNCC 5 cut(s) 462, 892, 893, 993, 1007
BspMAI CTGCAG 1 cut(s) 513
BspPI GGATC 5 cut(s) 4, 393, 417, 986, 999
BspQI GCTCTTC 2 cut(s) 254, 620
BspT107I GGYRCC 2 cut(s) 460, 1005
BspTNI GGTCTC 3 cut(s) 33, 72, 599
BsrDI GCAATG 2 cut(s) 224, 892
BsrFI RCCGGY 2 cut(s) 28, 42
BsrI ACTGG 4 cut(s) 830, 878, 1126, 1148
BssAI RCCGGY 2 cut(s) 28, 42
BssECI CCNNGG 3 cut(s) 430, 464, 685
BssHII GCGCGC 1 cut(s) 504
BssMI GATC 5 cut(s) 9, 385, 409, 793, 991
BssNI GRCGYC 5 cut(s) 5, 60, 223, 488, 596
Bst4CI ACNGT 2 cut(s) 157, 1045
Bst6I CTCTTC 3 cut(s) 254, 303, 620
BstACI GRCGYC 5 cut(s) 5, 60, 223, 488, 596
BstBAI YACGTR 2 cut(s) 52, 295
BstC8I GCNNGC 7 cut(s) 30, 215, 245, 506, 513, 1161, 1190
BstDEI CTNAG 2 cut(s) 259, 545
BstF5I GGATG 2 cut(s) 162, 911
BstFNI CGCG 4 cut(s) 390, 504, 506, 677
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 4 cut(s) 171, 506, 508, 677
BstKTI GATC 5 cut(s) 12, 388, 412, 796, 994
BstMAI GTCTC 5 cut(s) 33, 72, 599, 798, 925
BstMBI GATC 5 cut(s) 9, 385, 409, 793, 991
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 5 cut(s) 146, 469, 512, 547, 842
BstSFI CTRYAG 2 cut(s) 235, 509
BstUI CGCG 4 cut(s) 390, 504, 506, 677
BstV1I GCAGC 6 cut(s) 484, 495, 528, 550, 552, 642
BstX2I RGATCY 2 cut(s) 409, 991
BstXI CCANNNNNNTGG 2 cut(s) 902, 1002
BstYI RGATCY 2 cut(s) 409, 991
BstZI CGGCCG 1 cut(s) 44
BsuRI GGCC 6 cut(s) 46, 213, 291, 321, 515, 829
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 2 cut(s) 162, 911
BtsIMutI CAGTG 1 cut(s) 1050
Cac8I GCNNGC 7 cut(s) 30, 215, 245, 506, 513, 1161, 1190
CaiI CAGNNNCTG 1 cut(s) 544
CfoI GCGC 4 cut(s) 171, 506, 508, 677
Cfr10I RCCGGY 2 cut(s) 28, 42
Cfr13I GGNCC 3 cut(s) 682, 875, 891
CseI GACGC 5 cut(s) 49, 212, 379, 496, 585
Csp6I GTAC 5 cut(s) 49, 80, 496, 554, 751
CviAII CATG 1 cut(s) 947
CviQI GTAC 5 cut(s) 49, 80, 496, 554, 751
DdeI CTNAG 2 cut(s) 259, 545
DpnI GATC 5 cut(s) 11, 387, 411, 795, 993
DpnII GATC 5 cut(s) 9, 385, 409, 793, 991
EaeI YGGCCR 3 cut(s) 44, 289, 827
EagI CGGCCG 1 cut(s) 44
Eam1104I CTCTTC 3 cut(s) 254, 303, 620
EarI CTCTTC 3 cut(s) 254, 303, 620
EciI GGCGGA 1 cut(s) 549
EclXI CGGCCG 1 cut(s) 44
Eco147I AGGCCT 1 cut(s) 515
Eco31I GGTCTC 3 cut(s) 33, 72, 599
Eco47I GGWCC 3 cut(s) 682, 875, 891
Eco52I CGGCCG 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 1181
Eco72I CACGTG 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 891
FaeI CATG 1 cut(s) 950
FaqI GGGAC 1 cut(s) 904
FatI CATG 1 cut(s) 946
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 8 cut(s) 473, 509, 539, 542, 563, 566, 594, 631
FokI GGATG 2 cut(s) 149, 918
Fsp4HI GCNGC 8 cut(s) 473, 509, 539, 542, 563, 566, 594, 631
FspBI CTAG 1 cut(s) 1208
GlaI GCGC 4 cut(s) 170, 505, 507, 676
GluI GCNGC 8 cut(s) 473, 509, 539, 542, 563, 566, 594, 631
GsuI CTGGAG 1 cut(s) 97
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 6 cut(s) 46, 213, 291, 321, 515, 829
HapII CCGG 7 cut(s) 13, 29, 43, 166, 180, 322, 960
HgaI GACGC 5 cut(s) 49, 212, 379, 496, 585
HhaI GCGC 4 cut(s) 171, 506, 508, 677
Hin1I GRCGYC 5 cut(s) 5, 60, 223, 488, 596
Hin1II CATG 1 cut(s) 950
Hin6I GCGC 4 cut(s) 169, 504, 506, 675
HinP1I GCGC 4 cut(s) 169, 504, 506, 675
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 3 cut(s) 142, 313, 933
HpaII CCGG 7 cut(s) 13, 29, 43, 166, 180, 322, 960
HphI GGTGA 3 cut(s) 114, 145, 151
Hpy166II GTNNAC 4 cut(s) 55, 298, 421, 751
Hpy188I TCNGA 4 cut(s) 38, 699, 821, 1200
Hpy188III TCNNGA 3 cut(s) 114, 523, 960
Hpy8I GTNNAC 4 cut(s) 55, 298, 421, 751
HpyAV CCTTC 5 cut(s) 160, 357, 673, 866, 1042
HpyCH4III ACNGT 2 cut(s) 157, 1045
HpyCH4IV ACGT 5 cut(s) 51, 294, 354, 423, 494
HpyCH4V TGCA 5 cut(s) 364, 511, 885, 1153, 1159
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 469, 512, 547, 842
HpyF3I CTNAG 2 cut(s) 259, 545
HpySE526I ACGT 5 cut(s) 51, 294, 354, 423, 494
Hsp92I GRCGYC 5 cut(s) 5, 60, 223, 488, 596
Hsp92II CATG 1 cut(s) 950
HspAI GCGC 4 cut(s) 169, 504, 506, 675
KflI GGGWCCC 1 cut(s) 891
Kpn2I TCCGGA 1 cut(s) 959
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Kzo9I GATC 5 cut(s) 9, 385, 409, 793, 991
LguI GCTCTTC 2 cut(s) 254, 620
LmnI GCTCC 3 cut(s) 116, 324, 715
Lsp1109I GCAGC 6 cut(s) 484, 495, 528, 550, 552, 642
LweI GCATC 1 cut(s) 1156
MaeI CTAG 1 cut(s) 1208
MaeII ACGT 5 cut(s) 51, 294, 354, 423, 494
MaeIII GTNAC 2 cut(s) 157, 484
MalI GATC 5 cut(s) 11, 387, 411, 795, 993
MboI GATC 5 cut(s) 9, 385, 409, 793, 991
MboII GAAGA 7 cut(s) 241, 244, 247, 320, 637, 1103, 1213
MflI RGATCY 2 cut(s) 409, 991
MhlI GDGCHC 1 cut(s) 720
MlsI TGGCCA 1 cut(s) 829
MluCI AATT 4 cut(s) 331, 900, 1026, 1034
MluNI TGGCCA 1 cut(s) 829
MlyI GAGTC 1 cut(s) 927
MmeI TCCRAC 1 cut(s) 693
Mox20I TGGCCA 1 cut(s) 829
MreI CGCCGGCG 1 cut(s) 28
MroI TCCGGA 1 cut(s) 959
MroNI GCCGGC 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 312
MscI TGGCCA 1 cut(s) 829
MseI TTAA 3 cut(s) 357, 972, 1227
MslI CAYNNNNRTG 2 cut(s) 357, 915
Msp20I TGGCCA 1 cut(s) 829
MspA1I CMGCKG 3 cut(s) 475, 541, 565
MspI CCGG 7 cut(s) 13, 29, 43, 166, 180, 322, 960
MvnI CGCG 4 cut(s) 390, 504, 506, 677
MwoI GCNNNNNNNGC 5 cut(s) 146, 469, 512, 547, 842
NaeI GCCGGC 1 cut(s) 30
NdeII GATC 5 cut(s) 9, 385, 409, 793, 991
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 1 cut(s) 950
NlaIV GGNNCC 5 cut(s) 462, 892, 893, 993, 1007
NmeAIII GCCGAG 3 cut(s) 411, 489, 637
NmuCI GTSAC 2 cut(s) 157, 484
PauI GCGCGC 1 cut(s) 504
PceI AGGCCT 1 cut(s) 515
PciSI GCTCTTC 2 cut(s) 254, 620
PcsI WCGNNNNNNNCGW 5 cut(s) 57, 92, 153, 300, 420
PdiI GCCGGC 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 2 cut(s) 142, 313
Pfl23II CGTACG 1 cut(s) 48
PflMI CCANNNNNTGG 1 cut(s) 1188
PkrI GCNGC 8 cut(s) 474, 510, 540, 543, 564, 567, 595, 632
PleI GAGTC 1 cut(s) 927
PmaCI CACGTG 1 cut(s) 295
PmlI CACGTG 1 cut(s) 295
PpsI GAGTC 1 cut(s) 927
Ppu21I YACGTR 2 cut(s) 52, 295
PpuMI RGGWCCY 1 cut(s) 891
Psp5II RGGWCCY 1 cut(s) 891
PspCI CACGTG 1 cut(s) 295
PspLI CGTACG 1 cut(s) 48
PspN4I GGNNCC 5 cut(s) 462, 892, 893, 993, 1007
PspPI GGNCC 3 cut(s) 682, 875, 891
PspPPI RGGWCCY 1 cut(s) 891
PstI CTGCAG 1 cut(s) 513
PstNI CAGNNNCTG 1 cut(s) 544
PsuI RGATCY 2 cut(s) 409, 991
PteI GCGCGC 1 cut(s) 504
PvuII CAGCTG 2 cut(s) 475, 541
RsaI GTAC 5 cut(s) 50, 81, 497, 555, 752
RsaNI GTAC 5 cut(s) 49, 80, 496, 554, 751
RseI CAYNNNNRTG 2 cut(s) 357, 915
SalI GTCGAC 1 cut(s) 419
SapI GCTCTTC 2 cut(s) 254, 620
SaqAI TTAA 3 cut(s) 357, 972, 1227
SatI GCNGC 8 cut(s) 473, 509, 539, 542, 563, 566, 594, 631
Sau3AI GATC 5 cut(s) 9, 385, 409, 793, 991
Sau96I GGNCC 3 cut(s) 682, 875, 891
SchI GAGTC 1 cut(s) 927
SduI GDGCHC 1 cut(s) 720
SfaNI GCATC 1 cut(s) 1156
SfcI CTRYAG 2 cut(s) 235, 509
SgrAI CRCCGGYG 1 cut(s) 28
SgrDI CGTCGACG 1 cut(s) 419
SinI GGWCC 3 cut(s) 682, 875, 891
SmiMI CAYNNNNRTG 2 cut(s) 357, 915
SmlI CTYRAG 1 cut(s) 799
SmoI CTYRAG 1 cut(s) 799
Sse9I AATT 4 cut(s) 331, 900, 1026, 1034
SseBI AGGCCT 1 cut(s) 515
SsiI CCGC 6 cut(s) 502, 560, 563, 593, 609, 1009
SspI AATATT 1 cut(s) 984
SspMI CTAG 1 cut(s) 1208
StuI AGGCCT 1 cut(s) 515
TaaI ACNGT 2 cut(s) 157, 1045
TaiI ACGT 5 cut(s) 54, 297, 357, 426, 497
TaqI TCGA 8 cut(s) 8, 226, 316, 336, 369, 420, 783, 1030
TaqII GACCGA 2 cut(s) 263, 699
TasI AATT 4 cut(s) 331, 900, 1026, 1034
TatI WGTACW 1 cut(s) 750
TauI GCSGC 2 cut(s) 565, 596
TfiI GAWTC 2 cut(s) 142, 313
Tru1I TTAA 3 cut(s) 357, 972, 1227
Tru9I TTAA 3 cut(s) 357, 972, 1227
TscAI CASTG 1 cut(s) 1050
TseFI GTSAC 2 cut(s) 157, 484
TseI GCWGC 6 cut(s) 472, 508, 538, 541, 565, 630
Tsp45I GTSAC 2 cut(s) 157, 484
TspDTI ATGAA 4 cut(s) 321, 935, 1110, 1154
TspGWI ACGGA 4 cut(s) 123, 398, 415, 926
TspRI CASTG 1 cut(s) 1050
Van91I CCANNNNNTGG 1 cut(s) 1188
VpaK11BI GGWCC 3 cut(s) 682, 875, 891
XmiI GTMKAC 1 cut(s) 420
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 1 cut(s) 1208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.