Rmu_sc0002147.1_g000008

Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002147.1
Physical Location & Seq
Reverse (-)
46606 .. 48685
2080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002147.1_g000008.1.cds

Sequence Viewer

Length: 1266 bp
atggcgtcgatccgggggagaactctgtcgccggcgttccgagaccggccgtacctcaacggcggctctccgttttcggttcaatcgccgtcgcagaaggccttctccagctccaagtactcatcgccgctggtgtcggcgtttgtgacattcgcaatcaccgtccggagattcgtcgccggcgctctgttgcagcgggctccgcgtaaaggccagcagtggcggcgagcgtttttccggtgcttgctgttcttcttcttagggttcttgctcggtctggttccgttcggccacgtcgatgacgacggcgccgagattcggagccacggattcaattttgacatcaggccgccgcacgtcaatgtccagttcgacgacggcggcggagatcgagtcgtgaagcgcagagtggatctcgtcttggacgtaagccccgtcgtgccggtggcggagaaatatgatgatgatgatgatgacgtggcggcggcggcggtgccgaggaagcaggtgattgtggtgacgccgacgtacaaccgcgcattgcaggcctacttcttgaacagggtggcgcagctgctgaggcttgtgcctccgccgctgctttggattgtggtggagaccaaagccgcgtcggcggagactgctgagattttgaggaagagtggagtcatgtataggcatttggtgtgtggcaacaacttgaccagcgctaaggaccgaggcgtgtatcagaggaacacggcgttggagcacattgagcgccataagcttgacggcattgtgtactttggcgacgatgacaacatatactcgctggacttgtttgatagcttgagagaaatcaaccgttttgggacttggccagttgccatgttagcaccaagcaaaaacaaggccatattggaaggtccagtatgcaatgggagccaagtaaatggatggcatacaaatgataaaagcaagagactgcgtaggtttcatgttgacatgtcaggatttgctttcaatagcacaatattgtgggatccgaaaagatggcaccgcccaacatccattccaattcggcaattagattcagtgaaggagggtttccaagagaccactttcatagaacaagtggttgaagatgaaagtcaaatggaaggtattccagctggttgttcaaaagtaatgaactggcatcttcatttgcgagctcatagtcttgtctatcccaaaggctggcaacttcagaagaaccttgatgttgttctccccattctgtga

Protein Analysis

421

Amino Acids

47.57

Weight (kDa)

9.34

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0009920)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 496
Acc36I ACCTGC 1 cut(s) 496
AccB1I GGYRCC 3 cut(s) 308, 493, 1038
AccB7I CCANNNNNTGG 1 cut(s) 1221
AccII CGCG 3 cut(s) 205, 537, 629
AccIII TCCGGA 1 cut(s) 165
AclWI GGATC 4 cut(s) 4, 420, 1019, 1032
AcoI YGGCCR 3 cut(s) 47, 289, 860
AcuI CTGAAG 1 cut(s) 1214
AcyI GRCGYC 3 cut(s) 5, 309, 521
AfaI GTAC 4 cut(s) 53, 119, 530, 785
AfeI AGCGCT 1 cut(s) 709
AfiI CCNNNNNNNGG 3 cut(s) 209, 318, 1221
AflIII ACRYGT 1 cut(s) 987
AgsI TTSAA 6 cut(s) 83, 334, 559, 1006, 1124, 1164
AjiI CACGTC 3 cut(s) 295, 358, 478
AjuI GAANNNNNNNTTGG 2 cut(s) 728, 760
AluBI AGCT 6 cut(s) 111, 574, 769, 831, 1154, 1196
AluI AGCT 6 cut(s) 111, 574, 769, 831, 1154, 1196
Alw21I GWGCWC 2 cut(s) 753, 1198
Alw26I GTCTC 5 cut(s) 36, 611, 632, 958, 1091
AlwI GGATC 4 cut(s) 4, 420, 1019, 1032
AlwNI CAGNNNCTG 1 cut(s) 577
Aor13HI TCCGGA 1 cut(s) 165
Aor51HI AGCGCT 1 cut(s) 709
AoxI GGCC 8 cut(s) 47, 99, 211, 289, 347, 546, 860, 894
ApeKI GCWGC 4 cut(s) 193, 571, 574, 598
Asp700I GAANNNNTTC 2 cut(s) 101, 1146
AspLEI GCGC 7 cut(s) 185, 311, 405, 539, 571, 710, 762
AspS9I GGNCC 2 cut(s) 715, 908
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 3 cut(s) 151, 520, 529
AvaII GGWCC 2 cut(s) 715, 908
BalI TGGCCA 1 cut(s) 862
BamHI GGATCC 1 cut(s) 1024
BanI GGYRCC 3 cut(s) 308, 493, 1038
BanII GRGCYC 2 cut(s) 202, 1198
Bbv12I GWGCWC 2 cut(s) 753, 1198
BbvCI CCTCAGC 1 cut(s) 578
BbvI GCAGC 4 cut(s) 205, 561, 583, 585
BccI CCATC 2 cut(s) 933, 1029
BceAI ACGGC 7 cut(s) 34, 73, 76, 322, 394, 756, 790
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 5 cut(s) 36, 611, 632, 958, 1091
BfoI RGCGCY 4 cut(s) 186, 312, 711, 763
BfuAI ACCTGC 1 cut(s) 496
BglI GCCNNNNNGGC 1 cut(s) 632
BmcAI AGTACT 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 2 cut(s) 715, 908
BmgBI CACGTC 3 cut(s) 295, 358, 478
BmgT120I GGNCC 2 cut(s) 715, 908
BmiI GGNNCC 8 cut(s) 201, 282, 310, 323, 495, 926, 1026, 1040
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 1189
BplI GAGNNNNNCTC 2 cut(s) 399, 431
BpmI CTGGAG 1 cut(s) 91
Bpu10I CCTNAGC 2 cut(s) 578, 711
BpuEI CTTGAG 1 cut(s) 853
BpuMI CCSGG 1 cut(s) 14
BsaHI GRCGYC 3 cut(s) 5, 309, 521
BsaI GGTCTC 3 cut(s) 36, 611, 1091
BsaJI CCNNGG 4 cut(s) 13, 325, 497, 718
BsaWI WCCGGW 2 cut(s) 165, 237
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 318, 1221
Bse118I RCCGGY 4 cut(s) 31, 45, 179, 442
Bse1I ACTGG 4 cut(s) 367, 863, 911, 1181
Bse3DI GCAATG 2 cut(s) 539, 925
BseAI TCCGGA 1 cut(s) 165
BseDI CCNNGG 4 cut(s) 13, 325, 497, 718
BseGI GGATG 2 cut(s) 944, 1049
BseLI CCNNNNNNNGG 3 cut(s) 209, 318, 1221
BseMI GCAATG 2 cut(s) 539, 925
BseMII CTCAG 2 cut(s) 569, 636
BseNI ACTGG 4 cut(s) 367, 863, 911, 1181
BseX3I CGGCCG 1 cut(s) 47
BseXI GCAGC 4 cut(s) 205, 561, 583, 585
Bsh1236I CGCG 3 cut(s) 205, 537, 629
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 8 cut(s) 49, 101, 213, 291, 349, 548, 862, 896
BshNI GGYRCC 3 cut(s) 308, 493, 1038
BsiEI CGRYCG 1 cut(s) 50
BsiHKAI GWGCWC 2 cut(s) 753, 1198
BsiSI CCGG 7 cut(s) 13, 32, 46, 166, 180, 238, 443
BslFI GGGAC 1 cut(s) 868
BslI CCNNNNNNNGG 3 cut(s) 209, 318, 1221
BsmAI GTCTC 5 cut(s) 36, 611, 632, 958, 1091
BsmFI GGGAC 1 cut(s) 868
BsnI GGCC 8 cut(s) 49, 101, 213, 291, 349, 548, 862, 896
Bso31I GGTCTC 3 cut(s) 36, 611, 1091
Bsp1286I GDGCHC 3 cut(s) 202, 753, 1198
Bsp13I TCCGGA 1 cut(s) 165
Bsp143I GATC 4 cut(s) 9, 388, 412, 1024
BspANI GGCC 8 cut(s) 49, 101, 213, 291, 349, 548, 862, 896
BspCNI CTCAG 2 cut(s) 570, 637
BspEI TCCGGA 1 cut(s) 165
BspFNI CGCG 3 cut(s) 205, 537, 629
BspLI GGNNCC 8 cut(s) 201, 282, 310, 323, 495, 926, 1026, 1040
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 4 cut(s) 4, 420, 1019, 1032
BspT107I GGYRCC 3 cut(s) 308, 493, 1038
BspTNI GGTCTC 3 cut(s) 36, 611, 1091
BsrDI GCAATG 2 cut(s) 539, 925
BsrFI RCCGGY 4 cut(s) 31, 45, 179, 442
BsrI ACTGG 4 cut(s) 367, 863, 911, 1181
BssAI RCCGGY 4 cut(s) 31, 45, 179, 442
BssECI CCNNGG 4 cut(s) 13, 325, 497, 718
BssMI GATC 4 cut(s) 9, 388, 412, 1024
BssNI GRCGYC 3 cut(s) 5, 309, 521
Bst4CI ACNGT 2 cut(s) 163, 848
Bst6I CTCTTC 1 cut(s) 653
BstACI GRCGYC 3 cut(s) 5, 309, 521
BstC8I GCNNGC 9 cut(s) 33, 181, 198, 215, 228, 245, 546, 1194, 1223
BstDEI CTNAG 4 cut(s) 259, 578, 645, 711
BstDSI CCRYGG 1 cut(s) 325
BstF5I GGATG 2 cut(s) 944, 1049
BstFNI CGCG 3 cut(s) 205, 537, 629
BstH2I RGCGCY 4 cut(s) 186, 312, 711, 763
BstHHI GCGC 7 cut(s) 185, 311, 405, 539, 571, 710, 762
BstKTI GATC 4 cut(s) 12, 391, 415, 1027
BstMAI GTCTC 5 cut(s) 36, 611, 632, 958, 1091
BstMBI GATC 4 cut(s) 9, 388, 412, 1024
BstMCI CGRYCG 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 991
BstSCI CCNGG 1 cut(s) 12
BstUI CGCG 3 cut(s) 205, 537, 629
BstV1I GCAGC 4 cut(s) 205, 561, 583, 585
BstX2I RGATCY 2 cut(s) 412, 1024
BstXI CCANNNNNNTGG 1 cut(s) 935
BstYI RGATCY 2 cut(s) 412, 1024
BstZI CGGCCG 1 cut(s) 47
BsuRI GGCC 8 cut(s) 49, 101, 213, 291, 349, 548, 862, 896
BtgI CCRYGG 1 cut(s) 325
BtgZI GCGATG 1 cut(s) 108
BtrI CACGTC 3 cut(s) 295, 358, 478
BtsCI GGATG 2 cut(s) 944, 1049
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 2 cut(s) 224, 1083
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 9 cut(s) 33, 181, 198, 215, 228, 245, 546, 1194, 1223
CaiI CAGNNNCTG 1 cut(s) 577
CfoI GCGC 7 cut(s) 185, 311, 405, 539, 571, 710, 762
Cfr10I RCCGGY 4 cut(s) 31, 45, 179, 442
Cfr13I GGNCC 2 cut(s) 715, 908
CseI GACGC 2 cut(s) 529, 618
Csp6I GTAC 4 cut(s) 52, 118, 529, 784
CviAII CATG 4 cut(s) 670, 871, 980, 988
CviQI GTAC 4 cut(s) 52, 118, 529, 784
DdeI CTNAG 4 cut(s) 259, 578, 645, 711
DinI GGCGCC 1 cut(s) 310
DpnI GATC 4 cut(s) 11, 390, 414, 1026
DpnII GATC 4 cut(s) 9, 388, 412, 1024
EaeI YGGCCR 3 cut(s) 47, 289, 860
EagI CGGCCG 1 cut(s) 47
Eam1104I CTCTTC 1 cut(s) 653
EarI CTCTTC 1 cut(s) 653
EciI GGCGGA 4 cut(s) 399, 464, 582, 650
Ecl136II GAGCTC 1 cut(s) 1196
EclXI CGGCCG 1 cut(s) 47
Eco147I AGGCCT 2 cut(s) 101, 548
Eco24I GRGCYC 2 cut(s) 202, 1198
Eco31I GGTCTC 3 cut(s) 36, 611, 1091
Eco47I GGWCC 2 cut(s) 715, 908
Eco47III AGCGCT 1 cut(s) 709
Eco52I CGGCCG 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 1196
Eco57I CTGAAG 1 cut(s) 1214
EcoICRI GAGCTC 1 cut(s) 1196
EcoT38I GRGCYC 2 cut(s) 202, 1198
EgeI GGCGCC 1 cut(s) 310
EheI GGCGCC 1 cut(s) 310
FaeI CATG 4 cut(s) 673, 874, 983, 991
FaqI GGGAC 1 cut(s) 868
FatI CATG 4 cut(s) 669, 870, 979, 987
FauI CCCGC 1 cut(s) 189
FokI GGATG 2 cut(s) 951, 1036
FriOI GRGCYC 2 cut(s) 202, 1198
GlaI GCGC 7 cut(s) 184, 310, 404, 538, 570, 709, 761
GsuI CTGGAG 1 cut(s) 91
HaeII RGCGCY 4 cut(s) 186, 312, 711, 763
HaeIII GGCC 8 cut(s) 49, 101, 213, 291, 349, 548, 862, 896
HapII CCGG 7 cut(s) 13, 32, 46, 166, 180, 238, 443
HgaI GACGC 2 cut(s) 529, 618
HhaI GCGC 7 cut(s) 185, 311, 405, 539, 571, 710, 762
Hin1I GRCGYC 3 cut(s) 5, 309, 521
Hin1II CATG 4 cut(s) 673, 874, 983, 991
Hin6I GCGC 7 cut(s) 183, 309, 403, 537, 569, 708, 760
HinP1I GCGC 7 cut(s) 183, 309, 403, 537, 569, 708, 760
HincII GTYRAC 1 cut(s) 985
HindII GTYRAC 1 cut(s) 985
HindIII AAGCTT 1 cut(s) 767
HinfI GANTC 6 cut(s) 171, 316, 330, 393, 666, 1073
HpaII CCGG 7 cut(s) 13, 32, 46, 166, 180, 238, 443
HphI GGTGA 3 cut(s) 151, 520, 529
Hpy166II GTNNAC 2 cut(s) 784, 985
Hpy188I TCNGA 5 cut(s) 41, 321, 732, 1029, 1233
Hpy188III TCNNGA 4 cut(s) 166, 397, 556, 993
Hpy8I GTNNAC 2 cut(s) 784, 985
HpyAV CCTTC 5 cut(s) 91, 112, 899, 1075, 1136
HpyCH4III ACNGT 2 cut(s) 163, 848
HpyCH4IV ACGT 5 cut(s) 294, 357, 426, 477, 527
HpyCH4V TGCA 3 cut(s) 193, 544, 918
HpyF3I CTNAG 4 cut(s) 259, 578, 645, 711
HpySE526I ACGT 5 cut(s) 294, 357, 426, 477, 527
Hsp92I GRCGYC 3 cut(s) 5, 309, 521
Hsp92II CATG 4 cut(s) 673, 874, 983, 991
HspAI GCGC 7 cut(s) 183, 309, 403, 537, 569, 708, 760
KasI GGCGCC 1 cut(s) 308
Kpn2I TCCGGA 1 cut(s) 165
KroI GCCGGC 2 cut(s) 31, 179
KroNI GCCGGC 2 cut(s) 33, 181
Kzo9I GATC 4 cut(s) 9, 388, 412, 1024
LmnI GCTCC 5 cut(s) 116, 205, 321, 748, 924
Lsp1109I GCAGC 4 cut(s) 205, 561, 583, 585
LweI GCATC 1 cut(s) 1189
MaeII ACGT 5 cut(s) 294, 357, 426, 477, 527
MaeIII GTNAC 2 cut(s) 145, 517
MalI GATC 4 cut(s) 11, 390, 414, 1026
MboI GATC 4 cut(s) 9, 388, 412, 1024
MboII GAAGA 6 cut(s) 244, 247, 670, 1136, 1175, 1246
MflI RGATCY 2 cut(s) 412, 1024
MhlI GDGCHC 3 cut(s) 202, 753, 1198
MlsI TGGCCA 1 cut(s) 862
MluCI AATT 3 cut(s) 334, 1059, 1067
MluNI TGGCCA 1 cut(s) 862
Mly113I GGCGCC 1 cut(s) 309
MlyI GAGTC 2 cut(s) 402, 675
MmeI TCCRAC 1 cut(s) 726
MnlI CCTC 8 cut(s) 65, 492, 573, 600, 648, 713, 726, 1078
Mox20I TGGCCA 1 cut(s) 862
MreI CGCCGGCG 2 cut(s) 31, 179
MroI TCCGGA 1 cut(s) 165
MroNI GCCGGC 2 cut(s) 31, 179
MroXI GAANNNNTTC 2 cut(s) 101, 1146
MscI TGGCCA 1 cut(s) 862
MslI CAYNNNNRTG 3 cut(s) 297, 360, 948
Msp20I TGGCCA 1 cut(s) 862
MspA1I CMGCKG 5 cut(s) 130, 196, 574, 598, 1154
MspI CCGG 7 cut(s) 13, 32, 46, 166, 180, 238, 443
MspR9I CCNGG 1 cut(s) 14
MvnI CGCG 3 cut(s) 205, 537, 629
NaeI GCCGGC 2 cut(s) 33, 181
NarI GGCGCC 1 cut(s) 309
NciI CCSGG 1 cut(s) 14
NdeII GATC 4 cut(s) 9, 388, 412, 1024
NgoMIV GCCGGC 2 cut(s) 31, 179
NlaIII CATG 4 cut(s) 673, 874, 983, 991
NlaIV GGNNCC 8 cut(s) 201, 282, 310, 323, 495, 926, 1026, 1040
NmeAIII GCCGAG 2 cut(s) 337, 522
NmuCI GTSAC 2 cut(s) 145, 517
NspI RCATGY 1 cut(s) 991
PaqCI CACCTGC 1 cut(s) 496
PceI AGGCCT 2 cut(s) 101, 548
PciI ACATGT 1 cut(s) 987
PcsI WCGNNNNNNNCGW 6 cut(s) 159, 294, 300, 309, 423, 432
PdiI GCCGGC 2 cut(s) 33, 181
PdmI GAANNNNTTC 2 cut(s) 101, 1146
PfeI GAWTC 4 cut(s) 171, 316, 330, 1073
PflMI CCANNNNNTGG 1 cut(s) 1221
PleI GAGTC 2 cut(s) 401, 674
PluTI GGCGCC 1 cut(s) 312
PpsI GAGTC 2 cut(s) 401, 674
PscI ACATGT 1 cut(s) 987
Psp124BI GAGCTC 1 cut(s) 1198
PspN4I GGNNCC 8 cut(s) 201, 282, 310, 323, 495, 926, 1026, 1040
PspPI GGNCC 2 cut(s) 715, 908
PstNI CAGNNNCTG 1 cut(s) 577
PsuI RGATCY 2 cut(s) 412, 1024
PvuII CAGCTG 2 cut(s) 574, 1154
RsaI GTAC 4 cut(s) 53, 119, 530, 785
RsaNI GTAC 4 cut(s) 52, 118, 529, 784
RseI CAYNNNNRTG 3 cut(s) 297, 360, 948
SacI GAGCTC 1 cut(s) 1198
Sau3AI GATC 4 cut(s) 9, 388, 412, 1024
Sau96I GGNCC 2 cut(s) 715, 908
ScaI AGTACT 1 cut(s) 119
SchI GAGTC 2 cut(s) 402, 675
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 3 cut(s) 202, 753, 1198
SfaNI GCATC 1 cut(s) 1189
SfoI GGCGCC 1 cut(s) 310
SgrAI CRCCGGYG 2 cut(s) 31, 179
SinI GGWCC 2 cut(s) 715, 908
SmiMI CAYNNNNRTG 3 cut(s) 297, 360, 948
SmlI CTYRAG 1 cut(s) 832
SmoI CTYRAG 1 cut(s) 832
Sse9I AATT 3 cut(s) 334, 1059, 1067
SseBI AGGCCT 2 cut(s) 101, 548
SspDI GGCGCC 1 cut(s) 308
SspI AATATT 1 cut(s) 1017
SstI GAGCTC 1 cut(s) 1198
StuI AGGCCT 2 cut(s) 101, 548
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 163, 848
TaiI ACGT 5 cut(s) 297, 360, 429, 480, 530
TaqI TCGA 4 cut(s) 8, 297, 372, 391
TaqII GACCGA 2 cut(s) 263, 732
TasI AATT 3 cut(s) 334, 1059, 1067
TatI WGTACW 2 cut(s) 117, 783
TfiI GAWTC 4 cut(s) 171, 316, 330, 1073
TscAI CASTG 2 cut(s) 224, 1083
TseFI GTSAC 2 cut(s) 145, 517
TseI GCWGC 4 cut(s) 193, 571, 574, 598
Tsp45I GTSAC 2 cut(s) 145, 517
TspDTI ATGAA 5 cut(s) 968, 1096, 1143, 1175, 1187
TspGWI ACGGA 3 cut(s) 60, 273, 342
TspRI CASTG 2 cut(s) 224, 1083
Van91I CCANNNNNTGG 1 cut(s) 1221
VpaK11BI GGWCC 2 cut(s) 715, 908
XceI RCATGY 1 cut(s) 991
XmnI GAANNNNTTC 2 cut(s) 101, 1146
ZrmI AGTACT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.