Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009920

Physical Location & Seq

Genomic Coordinates Forward (+)

59310310 .. 59313783

Gene Structure 3474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG420300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCGTCGATCCGGGGGAGAACTCTGTCGCCGGCGTTCCGAGACCGGCCGTACCTCAACGGCGGCTCTCCGTTTTCGGTTCAATCGCCGTCGCAGAAGGCCTTCTCCAGCTCCAAGTACTCATCGCCGCTGGTGTCGGCGTTTGTGACATTCGCAATCACCGTCCGGAGATTCGTCGCCGGCGCTCTGTTGCAGCGGGCTCCGCGTAAAGGCCAGCAGTGGCGGCGAGCGTTTTTCCGGTGCTTGCTGTTCTTCTTCTTAGGGTTCTTGCTCGGTCTGGTTCCGTTCGGCCACGTCGATGACGACGGCGCCGAGATTCGGAGCCACGGATTCAATTTTGACATCAGGCCGCCGCACGTCAATGTCCAGTTCGACGACGGCGGCGGAGATCGAGTCGTGAAGCGCAGAGTGGATCTCGTCTTGGACGTAAGCCCCGTCGTGCCGGTGGCGGAGAAATATGATGATGATGATGATGACGTGGCGGCGGCGGCGGTGCCGAGGAAGCAGGTGATTGTGGTGACGCCGACGTACAACCGCGCATTGCAGGCCTACTTCTTGAACAGGGTGGCGCAGCTGCTGAGGCTTGTGCCTCCGCCGCTGCTTTGGATTGTGGTGGAGACCAAAGCCGCGTCGGCGGAGACTGCTGAGATTTTGAGGAAGAGTGGAGTCATGTATAGGCATTTGGTGTGTGGCAACAACTTGACCAGCGCTAAGGACCGAGGCGTGTATCAGAGGAACACGGCGTTGGAGCACATTGAGCGCCATAAGCTTGACGGCATTGTGTACTTTGGCGACGATGACAACATATACTCGCTGGACTTGTTTGATAGCTTGAGAGAAATCAAGTATGTTGTTCTAAATCGAGCTTCATTTCACTTGTTTTCGAGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009653 GO:0009832 GO:0009834 GO:0009987 GO:0010208 GO:0010383 GO:0010410 GO:0010413 GO:0010417 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016740 GO:0016757 GO:0016763 GO:0022607 GO:0030198 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0042285 GO:0042546 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045491 GO:0045492 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0085029 GO:0098588 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_43

Protein Analysis

297

Amino Acids

33.38

Weight (kDa)

9.43

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_43	PF03360	189 - 284	5e-33	Glycosyltransferase family 43

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27600 AT1G27600
fragaria_vesca	FvH4_5g33700 FvH4_5g33700 FvH4_5g33700 FvH4_5g33700
malus_domestica	MD08G1209500.v1.1 MD15G1393400.v1.1
prunus_persica	Prupe.1G541800_v2.0.a1
pyrus_communis	pycom08g18080 pycom15g35370
rosa_chinensis	RchiOBHm_Chr7g0232711
rosa_laevigata	RLG00000001315
rosa_multiflora	Rmu_sc0002147.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227960
rosa_rugosa	Rorug07G0276000
rosa_samantha	Rh7AG430700 Rh7BG403800 Rh7CG449400 Rh7DG420300
rosa_wichuraiana	Rw7G035580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	496
Acc36I	ACCTGC	1 cut(s)	496
AccB1I	GGYRCC	2 cut(s)	308, 493
AccII	CGCG	3 cut(s)	205, 537, 629
AccIII	TCCGGA	1 cut(s)	165
AclWI	GGATC	2 cut(s)	4, 420
AcoI	YGGCCR	2 cut(s)	47, 289
AcyI	GRCGYC	3 cut(s)	5, 309, 521
AfaI	GTAC	4 cut(s)	53, 119, 530, 785
AfeI	AGCGCT	1 cut(s)	709
AfiI	CCNNNNNNNGG	2 cut(s)	209, 318
AgsI	TTSAA	3 cut(s)	83, 334, 559
AjiI	CACGTC	3 cut(s)	295, 358, 478
AjuI	GAANNNNNNNTTGG	2 cut(s)	728, 760
AluBI	AGCT	5 cut(s)	111, 574, 769, 831, 866
AluI	AGCT	5 cut(s)	111, 574, 769, 831, 866
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	3 cut(s)	36, 611, 632
AlwI	GGATC	2 cut(s)	4, 420
AlwNI	CAGNNNCTG	1 cut(s)	577
Aor13HI	TCCGGA	1 cut(s)	165
Aor51HI	AGCGCT	1 cut(s)	709
AoxI	GGCC	6 cut(s)	47, 99, 211, 289, 347, 546
ApeKI	GCWGC	4 cut(s)	193, 571, 574, 598
Asp700I	GAANNNNTTC	1 cut(s)	101
AspLEI	GCGC	7 cut(s)	185, 311, 405, 539, 571, 710, 762
AspS9I	GGNCC	1 cut(s)	715
AsuC2I	CCSGG	1 cut(s)	14
AsuHPI	GGTGA	3 cut(s)	151, 520, 529
AvaII	GGWCC	1 cut(s)	715
BanI	GGYRCC	2 cut(s)	308, 493
BanII	GRGCYC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	753
BbvCI	CCTCAGC	1 cut(s)	578
BbvI	GCAGC	4 cut(s)	205, 561, 583, 585
BceAI	ACGGC	7 cut(s)	34, 73, 76, 322, 394, 756, 790
BcnI	CCSGG	1 cut(s)	14
BcoDI	GTCTC	3 cut(s)	36, 611, 632
BfoI	RGCGCY	4 cut(s)	186, 312, 711, 763
BfuAI	ACCTGC	1 cut(s)	496
BglI	GCCNNNNNGGC	1 cut(s)	632
BmcAI	AGTACT	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	715
BmgBI	CACGTC	3 cut(s)	295, 358, 478
BmgT120I	GGNCC	1 cut(s)	715
BmiI	GGNNCC	5 cut(s)	201, 282, 310, 323, 495
BmrFI	CCNGG	1 cut(s)	14
BplI	GAGNNNNNCTC	2 cut(s)	399, 431
BpmI	CTGGAG	1 cut(s)	91
Bpu10I	CCTNAGC	2 cut(s)	578, 711
BpuEI	CTTGAG	1 cut(s)	853
BpuMI	CCSGG	1 cut(s)	14
BsaHI	GRCGYC	3 cut(s)	5, 309, 521
BsaI	GGTCTC	2 cut(s)	36, 611
BsaJI	CCNNGG	4 cut(s)	13, 325, 497, 718
BsaWI	WCCGGW	2 cut(s)	165, 237
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 318
Bse118I	RCCGGY	4 cut(s)	31, 45, 179, 442
Bse1I	ACTGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	539
BseAI	TCCGGA	1 cut(s)	165
BseDI	CCNNGG	4 cut(s)	13, 325, 497, 718
BseLI	CCNNNNNNNGG	2 cut(s)	209, 318
BseMI	GCAATG	1 cut(s)	539
BseMII	CTCAG	2 cut(s)	569, 636
BseNI	ACTGG	1 cut(s)	367
BseX3I	CGGCCG	1 cut(s)	47
BseXI	GCAGC	4 cut(s)	205, 561, 583, 585
Bsh1236I	CGCG	3 cut(s)	205, 537, 629
Bsh1285I	CGRYCG	1 cut(s)	50
BshFI	GGCC	6 cut(s)	49, 101, 213, 291, 349, 548
BshNI	GGYRCC	2 cut(s)	308, 493
BsiEI	CGRYCG	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	753
BsiSI	CCGG	7 cut(s)	13, 32, 46, 166, 180, 238, 443
BslI	CCNNNNNNNGG	2 cut(s)	209, 318
BsmAI	GTCTC	3 cut(s)	36, 611, 632
BsnI	GGCC	6 cut(s)	49, 101, 213, 291, 349, 548
Bso31I	GGTCTC	2 cut(s)	36, 611
Bsp1286I	GDGCHC	2 cut(s)	202, 753
Bsp13I	TCCGGA	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	9, 388, 412
BspANI	GGCC	6 cut(s)	49, 101, 213, 291, 349, 548
BspCNI	CTCAG	2 cut(s)	570, 637
BspEI	TCCGGA	1 cut(s)	165
BspFNI	CGCG	3 cut(s)	205, 537, 629
BspLI	GGNNCC	5 cut(s)	201, 282, 310, 323, 495
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	2 cut(s)	4, 420
BspT107I	GGYRCC	2 cut(s)	308, 493
BspTNI	GGTCTC	2 cut(s)	36, 611
BsrDI	GCAATG	1 cut(s)	539
BsrFI	RCCGGY	4 cut(s)	31, 45, 179, 442
BsrI	ACTGG	1 cut(s)	367
BssAI	RCCGGY	4 cut(s)	31, 45, 179, 442
BssECI	CCNNGG	4 cut(s)	13, 325, 497, 718
BssMI	GATC	3 cut(s)	9, 388, 412
BssNI	GRCGYC	3 cut(s)	5, 309, 521
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	653
BstACI	GRCGYC	3 cut(s)	5, 309, 521
BstC8I	GCNNGC	7 cut(s)	33, 181, 198, 215, 228, 245, 546
BstDEI	CTNAG	4 cut(s)	259, 578, 645, 711
BstDSI	CCRYGG	1 cut(s)	325
BstFNI	CGCG	3 cut(s)	205, 537, 629
BstH2I	RGCGCY	4 cut(s)	186, 312, 711, 763
BstHHI	GCGC	7 cut(s)	185, 311, 405, 539, 571, 710, 762
BstKTI	GATC	3 cut(s)	12, 391, 415
BstMAI	GTCTC	3 cut(s)	36, 611, 632
BstMBI	GATC	3 cut(s)	9, 388, 412
BstMCI	CGRYCG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	12
BstUI	CGCG	3 cut(s)	205, 537, 629
BstV1I	GCAGC	4 cut(s)	205, 561, 583, 585
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BstZI	CGGCCG	1 cut(s)	47
BsuRI	GGCC	6 cut(s)	49, 101, 213, 291, 349, 548
BtgI	CCRYGG	1 cut(s)	325
BtgZI	GCGATG	1 cut(s)	108
BtrI	CACGTC	3 cut(s)	295, 358, 478
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	224
BveI	ACCTGC	1 cut(s)	496
Cac8I	GCNNGC	7 cut(s)	33, 181, 198, 215, 228, 245, 546
CaiI	CAGNNNCTG	1 cut(s)	577
CfoI	GCGC	7 cut(s)	185, 311, 405, 539, 571, 710, 762
Cfr10I	RCCGGY	4 cut(s)	31, 45, 179, 442
Cfr13I	GGNCC	1 cut(s)	715
CseI	GACGC	2 cut(s)	529, 618
Csp6I	GTAC	4 cut(s)	52, 118, 529, 784
CviAII	CATG	1 cut(s)	670
CviQI	GTAC	4 cut(s)	52, 118, 529, 784
DdeI	CTNAG	4 cut(s)	259, 578, 645, 711
DinI	GGCGCC	1 cut(s)	310
DpnI	GATC	3 cut(s)	11, 390, 414
DpnII	GATC	3 cut(s)	9, 388, 412
EaeI	YGGCCR	2 cut(s)	47, 289
EagI	CGGCCG	1 cut(s)	47
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
EciI	GGCGGA	4 cut(s)	399, 464, 582, 650
EclXI	CGGCCG	1 cut(s)	47
Eco147I	AGGCCT	2 cut(s)	101, 548
Eco24I	GRGCYC	1 cut(s)	202
Eco31I	GGTCTC	2 cut(s)	36, 611
Eco47I	GGWCC	1 cut(s)	715
Eco47III	AGCGCT	1 cut(s)	709
Eco52I	CGGCCG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	202
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
FaeI	CATG	1 cut(s)	673
FaiI	YATR	7 cut(s)	459, 671, 675, 765, 806, 808, 849
FatI	CATG	1 cut(s)	669
FauI	CCCGC	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	202
GlaI	GCGC	7 cut(s)	184, 310, 404, 538, 570, 709, 761
GsuI	CTGGAG	1 cut(s)	91
HaeII	RGCGCY	4 cut(s)	186, 312, 711, 763
HaeIII	GGCC	6 cut(s)	49, 101, 213, 291, 349, 548
HapII	CCGG	7 cut(s)	13, 32, 46, 166, 180, 238, 443
HgaI	GACGC	2 cut(s)	529, 618
HhaI	GCGC	7 cut(s)	185, 311, 405, 539, 571, 710, 762
Hin1I	GRCGYC	3 cut(s)	5, 309, 521
Hin1II	CATG	1 cut(s)	673
Hin6I	GCGC	7 cut(s)	183, 309, 403, 537, 569, 708, 760
HinP1I	GCGC	7 cut(s)	183, 309, 403, 537, 569, 708, 760
HindIII	AAGCTT	1 cut(s)	767
HinfI	GANTC	5 cut(s)	171, 316, 330, 393, 666
HpaII	CCGG	7 cut(s)	13, 32, 46, 166, 180, 238, 443
HphI	GGTGA	3 cut(s)	151, 520, 529
Hpy166II	GTNNAC	1 cut(s)	784
Hpy188I	TCNGA	3 cut(s)	41, 321, 732
Hpy188III	TCNNGA	3 cut(s)	166, 397, 556
Hpy8I	GTNNAC	1 cut(s)	784
HpyAV	CCTTC	2 cut(s)	91, 112
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	5 cut(s)	294, 357, 426, 477, 527
HpyCH4V	TGCA	2 cut(s)	193, 544
HpyF3I	CTNAG	4 cut(s)	259, 578, 645, 711
HpySE526I	ACGT	5 cut(s)	294, 357, 426, 477, 527
Hsp92I	GRCGYC	3 cut(s)	5, 309, 521
Hsp92II	CATG	1 cut(s)	673
HspAI	GCGC	7 cut(s)	183, 309, 403, 537, 569, 708, 760
KasI	GGCGCC	1 cut(s)	308
Kpn2I	TCCGGA	1 cut(s)	165
KroI	GCCGGC	2 cut(s)	31, 179
KroNI	GCCGGC	2 cut(s)	33, 181
Kzo9I	GATC	3 cut(s)	9, 388, 412
LmnI	GCTCC	4 cut(s)	116, 205, 321, 748
Lsp1109I	GCAGC	4 cut(s)	205, 561, 583, 585
MaeII	ACGT	5 cut(s)	294, 357, 426, 477, 527
MaeIII	GTNAC	2 cut(s)	145, 517
MalI	GATC	3 cut(s)	11, 390, 414
MboI	GATC	3 cut(s)	9, 388, 412
MboII	GAAGA	3 cut(s)	244, 247, 670
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	2 cut(s)	202, 753
MluCI	AATT	1 cut(s)	334
Mly113I	GGCGCC	1 cut(s)	309
MlyI	GAGTC	2 cut(s)	402, 675
MmeI	TCCRAC	1 cut(s)	726
MnlI	CCTC	7 cut(s)	65, 492, 573, 600, 648, 713, 726
MreI	CGCCGGCG	2 cut(s)	31, 179
MroI	TCCGGA	1 cut(s)	165
MroNI	GCCGGC	2 cut(s)	31, 179
MroXI	GAANNNNTTC	1 cut(s)	101
MslI	CAYNNNNRTG	2 cut(s)	297, 360
MspA1I	CMGCKG	4 cut(s)	130, 196, 574, 598
MspI	CCGG	7 cut(s)	13, 32, 46, 166, 180, 238, 443
MspR9I	CCNGG	1 cut(s)	14
MvnI	CGCG	3 cut(s)	205, 537, 629
NaeI	GCCGGC	2 cut(s)	33, 181
NarI	GGCGCC	1 cut(s)	309
NciI	CCSGG	1 cut(s)	14
NdeII	GATC	3 cut(s)	9, 388, 412
NgoMIV	GCCGGC	2 cut(s)	31, 179
NlaIII	CATG	1 cut(s)	673
NlaIV	GGNNCC	5 cut(s)	201, 282, 310, 323, 495
NmeAIII	GCCGAG	2 cut(s)	337, 522
NmuCI	GTSAC	2 cut(s)	145, 517
PaqCI	CACCTGC	1 cut(s)	496
PceI	AGGCCT	2 cut(s)	101, 548
PcsI	WCGNNNNNNNCGW	6 cut(s)	159, 294, 300, 309, 423, 432
PdiI	GCCGGC	2 cut(s)	33, 181
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	3 cut(s)	171, 316, 330
PleI	GAGTC	2 cut(s)	401, 674
PluTI	GGCGCC	1 cut(s)	312
PpsI	GAGTC	2 cut(s)	401, 674
PspN4I	GGNNCC	5 cut(s)	201, 282, 310, 323, 495
PspPI	GGNCC	1 cut(s)	715
PstNI	CAGNNNCTG	1 cut(s)	577
PsuI	RGATCY	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	574
RsaI	GTAC	4 cut(s)	53, 119, 530, 785
RsaNI	GTAC	4 cut(s)	52, 118, 529, 784
RseI	CAYNNNNRTG	2 cut(s)	297, 360
Sau3AI	GATC	3 cut(s)	9, 388, 412
Sau96I	GGNCC	1 cut(s)	715
ScaI	AGTACT	1 cut(s)	119
SchI	GAGTC	2 cut(s)	402, 675
ScrFI	CCNGG	1 cut(s)	14
SduI	GDGCHC	2 cut(s)	202, 753
SfoI	GGCGCC	1 cut(s)	310
SgrAI	CRCCGGYG	2 cut(s)	31, 179
SinI	GGWCC	1 cut(s)	715
SmiMI	CAYNNNNRTG	2 cut(s)	297, 360
SmlI	CTYRAG	1 cut(s)	832
SmoI	CTYRAG	1 cut(s)	832
Sse9I	AATT	1 cut(s)	334
SseBI	AGGCCT	2 cut(s)	101, 548
SspDI	GGCGCC	1 cut(s)	308
StuI	AGGCCT	2 cut(s)	101, 548
StyD4I	CCNGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	5 cut(s)	297, 360, 429, 480, 530
TaqI	TCGA	6 cut(s)	8, 297, 372, 391, 862, 884
TaqII	GACCGA	2 cut(s)	263, 732
TasI	AATT	1 cut(s)	334
TatI	WGTACW	2 cut(s)	117, 783
TfiI	GAWTC	3 cut(s)	171, 316, 330
TscAI	CASTG	1 cut(s)	224
TseFI	GTSAC	2 cut(s)	145, 517
TseI	GCWGC	4 cut(s)	193, 571, 574, 598
Tsp45I	GTSAC	2 cut(s)	145, 517
TspDTI	ATGAA	1 cut(s)	858
TspGWI	ACGGA	3 cut(s)	60, 273, 342
TspRI	CASTG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	715
XmnI	GAANNNNTTC	1 cut(s)	101
ZrmI	AGTACT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.