Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012089

Physical Location & Seq

Genomic Coordinates Reverse (-)

9849844 .. 9852449

Gene Structure 2606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAGTGGGCAAGAGAATCATGATCATGGCCGGATCTCTTCTACGCCCGCCGCCGCGTCGGAGCCTTCCAAGGCTGCTGCTCACTCCTCTGACTACGCTCCTTACCCTAAGCTCGATCCTACCGACGTCACTCCTCCTCCTCCTCAGCCTATTCCCACCGGTGCCGCCGCAACCACCATGCCAGCGGAATCCAATCCTTACGTTTCTCCTTCCCCTGCCCCAAGGAATACGATGGATTCGGTGAAGGATACGTTAGGGAAATGGGGGAAAATGGCTGCCGACGCCACCAAGAAGGCGGAGGATCTCGCCGGAAATTTTTGGCAGCACTTGAAAACAGGCCCAAGTGTAGCAGATGCTGCTGTTTCACGAATTGCTCAGGGGACAAAAATACTTGCAGAGGGTGGATACGAGAAGGTCTTCAAGCAAACATTTGATTGCCTTCCTGATGAAAAACTTCTCAAGACCTATGCTTGCTACTTGTCTACATCTGCTGGTCCTGTCCTGGGAGTTATGTATCTTTCGACTCACAAGCTTGCGTTCTCTAGTGACAATCCTCTCTCTTACAAAGAGGGTGAGCAGACCCTGTGGAGCTATTACAAGGTGGTACTTCCGGCGAATCAGCTGAAGGCAGTGAACCCATCAACAAGTAGAGTGAACACATCTGATAAATACATACAAGTGATTTCCATCGACAACCACGAGTTCTGGTTTATGGGGTTTGTGACTTATGAAAGCGCTGTGAAGAGCCTTCAAGAAGCGGTGCAGTCACATGGTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 ko04066 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05200 ko05211 map03420 map04066 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05200 map05211

Pfam Domains

Protein Families

GRAM

Protein Analysis

259

Amino Acids

27.96

Weight (kDa)

6.16

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAM	PF02893	139 - 257	2.3e-24	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28200 AT1G28200
fragaria_vesca	FvH4_5g35910
malus_domestica	MD08G1192100.v1.1 MD15G1380800.v1.1
prunus_persica	Prupe.1G527000_v2.0.a1
pyrus_communis	pycom08g16590 pycom15g34130
rosa_chinensis	RchiOBHm_Chr7g0237641
rosa_laevigata	RLG00000000979
rosa_multiflora	Rmu_sc0007826.1_g000010
rosa_roxburghii	Rroxscaffold_3G00223910
rosa_rugosa	Rorug07G0305800 Rorug07G0305900
rosa_samantha	Rh7AG462600 Rh7BG432600 Rh7CG479400 Rh7DG448400
rosa_wichuraiana	Rw7G038270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	482
AccII	CGCG	1 cut(s)	56
AciI	CCGC	8 cut(s)	48, 51, 54, 165, 168, 185, 296, 758
AclWI	GGATC	3 cut(s)	41, 110, 309
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	644
AcyI	GRCGYC	2 cut(s)	126, 282
AfaI	GTAC	1 cut(s)	606
AfeI	AGCGCT	1 cut(s)	736
AfiI	CCNNNNNNNGG	1 cut(s)	503
AgeI	ACCGGT	1 cut(s)	158
AgsI	TTSAA	3 cut(s)	331, 421, 752
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	4 cut(s)	112, 532, 591, 622
AluI	AGCT	4 cut(s)	112, 532, 591, 622
AlwI	GGATC	3 cut(s)	41, 110, 309
AlwNI	CAGNNNCTG	2 cut(s)	356, 583
Aor51HI	AGCGCT	1 cut(s)	736
AoxI	GGCC	2 cut(s)	28, 337
ApeKI	GCWGC	5 cut(s)	74, 77, 275, 322, 356
ApoI	RAATTY	1 cut(s)	313
AsiGI	ACCGGT	1 cut(s)	158
Asp700I	GAANNNNTTC	2 cut(s)	416, 453
AspLEI	GCGC	1 cut(s)	737
AspS9I	GGNCC	3 cut(s)	338, 494, 773
AsuHPI	GGTGA	2 cut(s)	253, 584
AvaII	GGWCC	2 cut(s)	494, 773
BanI	GGYRCC	1 cut(s)	161
BauI	CACGAG	1 cut(s)	698
BbsI	GAAGAC	1 cut(s)	409
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	5 cut(s)	61, 64, 262, 334, 343
BccI	CCATC	3 cut(s)	226, 646, 695
BciT130I	CCWGG	1 cut(s)	503
BciVI	GTATCC	2 cut(s)	241, 398
BclI	TGATCA	1 cut(s)	22
BfaI	CTAG	1 cut(s)	543
BfoI	RGCGCY	1 cut(s)	738
BfuI	GTATCC	2 cut(s)	241, 398
BisI	GCNGC	9 cut(s)	51, 54, 75, 78, 165, 168, 276, 323, 357
BlsI	GCNGC	9 cut(s)	52, 55, 76, 79, 166, 169, 277, 324, 358
Bme1390I	CCNGG	1 cut(s)	503
Bme18I	GGWCC	2 cut(s)	494, 773
BmgT120I	GGNCC	3 cut(s)	338, 494, 773
BmiI	GGNNCC	2 cut(s)	63, 163
BmrFI	CCNGG	1 cut(s)	503
BmsI	GCATC	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	409
Bpu10I	CCTNAGC	3 cut(s)	108, 144, 375
BpuEI	CTTGAG	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	686
BsaHI	GRCGYC	2 cut(s)	126, 282
BsaJI	CCNNGG	3 cut(s)	69, 221, 502
BsaWI	WCCGGW	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse118I	RCCGGY	1 cut(s)	158
Bse8I	GATNNNNATC	1 cut(s)	686
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	3 cut(s)	69, 221, 502
BseJI	GATNNNNATC	1 cut(s)	686
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMII	CTCAG	2 cut(s)	158, 389
BseRI	GAGGAG	5 cut(s)	76, 123, 126, 129, 132
BseXI	GCAGC	5 cut(s)	61, 64, 262, 334, 343
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	30, 339
BshNI	GGYRCC	1 cut(s)	161
BshTI	ACCGGT	1 cut(s)	158
BsiSI	CCGG	4 cut(s)	31, 159, 309, 611
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	30, 339
Bsp143I	GATC	4 cut(s)	22, 33, 115, 301
BspACI	CCGC	8 cut(s)	48, 51, 54, 165, 168, 185, 296, 758
BspANI	GGCC	2 cut(s)	30, 339
BspCNI	CTCAG	2 cut(s)	157, 388
BspFNI	CGCG	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	2 cut(s)	63, 163
BspPI	GGATC	3 cut(s)	41, 110, 309
BspQI	GCTCTTC	1 cut(s)	737
BspT107I	GGYRCC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	69, 221, 502
BssMI	GATC	4 cut(s)	22, 33, 115, 301
BssNI	GRCGYC	2 cut(s)	126, 282
BssSI	CACGAG	1 cut(s)	698
BssT1I	CCWWGG	2 cut(s)	69, 221
Bst2BI	CACGAG	1 cut(s)	698
Bst2UI	CCWGG	1 cut(s)	503
Bst6I	CTCTTC	2 cut(s)	43, 737
BstACI	GRCGYC	2 cut(s)	126, 282
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	4 cut(s)	48, 183, 472, 534
BstDEI	CTNAG	3 cut(s)	108, 144, 375
BstFNI	CGCG	1 cut(s)	56
BstH2I	RGCGCY	1 cut(s)	738
BstHHI	GCGC	1 cut(s)	737
BstKTI	GATC	4 cut(s)	25, 36, 118, 304
BstMBI	GATC	4 cut(s)	22, 33, 115, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 356
BstNI	CCWGG	1 cut(s)	503
BstSCI	CCNGG	1 cut(s)	501
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	5 cut(s)	61, 64, 262, 334, 343
BstV2I	GAAGAC	1 cut(s)	409
BstX2I	RGATCY	2 cut(s)	33, 301
BstYI	RGATCY	2 cut(s)	33, 301
BsuI	GTATCC	2 cut(s)	241, 398
BsuRI	GGCC	2 cut(s)	30, 339
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	4 cut(s)	48, 183, 472, 534
CaiI	CAGNNNCTG	2 cut(s)	356, 583
CciI	TCATGA	1 cut(s)	19
CfoI	GCGC	1 cut(s)	737
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	3 cut(s)	338, 494, 773
CseI	GACGC	2 cut(s)	45, 290
Csp6I	GTAC	1 cut(s)	605
CspAI	ACCGGT	1 cut(s)	158
CviAII	CATG	4 cut(s)	20, 26, 178, 770
CviQI	GTAC	1 cut(s)	605
DdeI	CTNAG	3 cut(s)	108, 144, 375
DpnI	GATC	4 cut(s)	24, 35, 117, 303
DpnII	GATC	4 cut(s)	22, 33, 115, 301
EaeI	YGGCCR	1 cut(s)	28
Eam1104I	CTCTTC	2 cut(s)	43, 737
EarI	CTCTTC	2 cut(s)	43, 737
EciI	GGCGGA	1 cut(s)	311
Eco130I	CCWWGG	2 cut(s)	69, 221
Eco47I	GGWCC	2 cut(s)	494, 773
Eco47III	AGCGCT	1 cut(s)	736
Eco57I	CTGAAG	1 cut(s)	644
EcoRII	CCWGG	1 cut(s)	501
EcoT14I	CCWWGG	2 cut(s)	69, 221
ErhI	CCWWGG	2 cut(s)	69, 221
FaeI	CATG	4 cut(s)	23, 29, 181, 773
FaiI	YATR	9 cut(s)	21, 27, 179, 468, 512, 674, 713, 729, 771
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	4 cut(s)	19, 25, 177, 769
FauI	CCCGC	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	482
Fnu4HI	GCNGC	9 cut(s)	51, 54, 75, 78, 165, 168, 276, 323, 357
Fsp4HI	GCNGC	9 cut(s)	51, 54, 75, 78, 165, 168, 276, 323, 357
FspBI	CTAG	1 cut(s)	543
GlaI	GCGC	1 cut(s)	736
GluI	GCNGC	9 cut(s)	51, 54, 75, 78, 165, 168, 276, 323, 357
HaeII	RGCGCY	1 cut(s)	738
HaeIII	GGCC	2 cut(s)	30, 339
HapII	CCGG	4 cut(s)	31, 159, 309, 611
HgaI	GACGC	2 cut(s)	45, 290
HhaI	GCGC	1 cut(s)	737
Hin1I	GRCGYC	2 cut(s)	126, 282
Hin1II	CATG	4 cut(s)	23, 29, 181, 773
Hin6I	GCGC	1 cut(s)	735
HinP1I	GCGC	1 cut(s)	735
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	5 cut(s)	16, 188, 236, 523, 616
HpaII	CCGG	4 cut(s)	31, 159, 309, 611
HphI	GGTGA	2 cut(s)	253, 584
Hpy166II	GTNNAC	3 cut(s)	483, 634, 655
Hpy188I	TCNGA	3 cut(s)	61, 91, 664
Hpy188III	TCNNGA	5 cut(s)	20, 366, 443, 460, 752
Hpy8I	GTNNAC	3 cut(s)	483, 634, 655
Hpy99I	CGWCG	3 cut(s)	61, 128, 284
HpyAV	CCTTC	8 cut(s)	75, 219, 238, 286, 406, 449, 619, 758
HpyCH4IV	ACGT	3 cut(s)	126, 201, 251
HpyCH4V	TGCA	2 cut(s)	395, 763
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 356
HpyF3I	CTNAG	3 cut(s)	108, 144, 375
HpySE526I	ACGT	3 cut(s)	126, 201, 251
Hsp92I	GRCGYC	2 cut(s)	126, 282
Hsp92II	CATG	4 cut(s)	23, 29, 181, 773
HspAI	GCGC	1 cut(s)	735
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	4 cut(s)	22, 33, 115, 301
LguI	GCTCTTC	1 cut(s)	737
LmnI	GCTCC	3 cut(s)	61, 103, 588
Lsp1109I	GCAGC	5 cut(s)	61, 64, 262, 334, 343
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	3 cut(s)	126, 201, 251
MaeIII	GTNAC	4 cut(s)	127, 545, 721, 765
MalI	GATC	4 cut(s)	24, 35, 117, 303
MboI	GATC	4 cut(s)	22, 33, 115, 301
MboII	GAAGA	3 cut(s)	30, 409, 754
MflI	RGATCY	2 cut(s)	33, 301
MluCI	AATT	2 cut(s)	313, 369
MlyI	GAGTC	1 cut(s)	517
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	9 cut(s)	97, 144, 147, 150, 153, 292, 391, 562, 564
MroXI	GAANNNNTTC	2 cut(s)	416, 453
MslI	CAYNNNNRTG	2 cut(s)	24, 677
MspA1I	CMGCKG	2 cut(s)	185, 622
MspI	CCGG	4 cut(s)	31, 159, 309, 611
MspR9I	CCNGG	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	503
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	281, 356
NdeII	GATC	4 cut(s)	22, 33, 115, 301
NlaIII	CATG	4 cut(s)	23, 29, 181, 773
NlaIV	GGNNCC	2 cut(s)	63, 163
NmuCI	GTSAC	4 cut(s)	127, 545, 721, 765
PagI	TCATGA	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	737
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 696
PdmI	GAANNNNTTC	2 cut(s)	416, 453
PfeI	GAWTC	4 cut(s)	16, 188, 236, 616
PinAI	ACCGGT	1 cut(s)	158
PkrI	GCNGC	9 cut(s)	52, 55, 76, 79, 166, 169, 277, 324, 358
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	2 cut(s)	63, 163
PspPI	GGNCC	3 cut(s)	338, 494, 773
PstNI	CAGNNNCTG	2 cut(s)	356, 583
PsuI	RGATCY	2 cut(s)	33, 301
PvuII	CAGCTG	1 cut(s)	622
RsaI	GTAC	1 cut(s)	606
RsaNI	GTAC	1 cut(s)	605
RseI	CAYNNNNRTG	2 cut(s)	24, 677
SapI	GCTCTTC	1 cut(s)	737
SatI	GCNGC	9 cut(s)	51, 54, 75, 78, 165, 168, 276, 323, 357
Sau3AI	GATC	4 cut(s)	22, 33, 115, 301
Sau96I	GGNCC	3 cut(s)	338, 494, 773
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	1 cut(s)	503
SfaNI	GCATC	1 cut(s)	343
SgrAI	CRCCGGYG	1 cut(s)	158
SinI	GGWCC	2 cut(s)	494, 773
SmiMI	CAYNNNNRTG	2 cut(s)	24, 677
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	2 cut(s)	313, 369
SsiI	CCGC	8 cut(s)	48, 51, 54, 165, 168, 185, 296, 758
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	1 cut(s)	501
StyI	CCWWGG	2 cut(s)	69, 221
TaiI	ACGT	3 cut(s)	129, 204, 254
TaqI	TCGA	3 cut(s)	114, 521, 690
TasI	AATT	2 cut(s)	313, 369
TauI	GCSGC	4 cut(s)	53, 56, 167, 170
TfiI	GAWTC	4 cut(s)	16, 188, 236, 616
TscAI	CASTG	1 cut(s)	636
TseFI	GTSAC	4 cut(s)	127, 545, 721, 765
TseI	GCWGC	5 cut(s)	74, 77, 275, 322, 356
Tsp45I	GTSAC	4 cut(s)	127, 545, 721, 765
TspDTI	ATGAA	2 cut(s)	462, 744
TspGWI	ACGGA	1 cut(s)	765
TspRI	CASTG	1 cut(s)	636
VpaK11BI	GGWCC	2 cut(s)	494, 773
XapI	RAATTY	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	482
XmnI	GAANNNNTTC	2 cut(s)	416, 453
XspI	CTAG	1 cut(s)	543
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.