RchiOBHm_Chr7g0237641

GEM-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0012089
Physical Location & Seq
Reverse (-)
62793412 .. 62798302
4891 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21298

Sequence Viewer

Length: 894 bp
ATGAGCGAGCAGCATCAGGTAGCCGGCGACACAAAGCCTCCTACTCACTCCCAAGACTACGCTCCTTACCCTAAGCTCGATCCAAACGACGTCGCTCCGCCTCCCCACTCCGAAACCTGGACCTCCGTCTCCATCGCCTCAGAAAAGTCCGAATCGCCGTCAGTCCCGTCAGCGCCGTCGGTCGCGAATCCCGAAGTACACCCCGAGGCTCGGGCACCGCCGATCCCCGAAGACAACGCCGCCGCCACCACCATGCCGCTGGAGTCCAACCCTTACGTCACCAATCCGGCTCCGCCTCCTTCTTCGTCCGTCAAGAATAAGGTGGATTCAGTGAAAGATGTTCTTGGAAAATGGGGAAAGAAGGCTGTGGAGACTACCAAGAAGGGTCAGGATCTTGCGGGCAACATGTGGCAACACTTGAAAACAGGACCCAGTTTTGCTGATGCTGCTGTAGGAAGAATTGCTCAGAGTGCAAAAGTGATTGCTGAAGGTGGTTATGAGAAGATCTTTCAGAAAAATTTTGAGACAGTCCCTGACGAGCAACTTCTGAAGACATTTGCTTGCTATCTGTCCACATCTGCTGGCCCCGTAATGGGAGTTATATATTTGTCAACAGCAAAGCTTGCATTTTGCAGTGATGACCCCCTTTCATACAAGACTGGTGATCAGACTGCATGGAGCTATTATAAGGTGGTTATTCCATTACATCAGCTAAAGGCAGTCAACCCATCAACGAGCAAAGTCAAAGCAGCTGAAAAATACATCCAGGTCATCTCTGTTGACAACCATGAGTTCTGGTTTATGAGCTTTGTAAACTATGATAGTGCTGTGAAACACCTTCAAGAAGCAGTGCAGCCCCACCCCCAGCCCCAGCCCCAACCCCACAGCTTGTAA

Protein Analysis

297

Amino Acids

32.29

Weight (kDa)

6.05

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAM PF02893 169 - 285 4.8e-20 GRAM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012089)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28200 AT1G28200
fragaria_vesca FvH4_5g35910
malus_domestica MD08G1192100.v1.1 MD15G1380800.v1.1
prunus_persica Prupe.1G527000_v2.0.a1
pyrus_communis pycom08g16590 pycom15g34130
rosa_chinensis RchiOBHm_Chr7g0237641
rosa_laevigata RLG00000000979
rosa_multiflora Rmu_sc0007826.1_g000010
rosa_roxburghii Rroxscaffold_3G00223910
rosa_rugosa Rorug07G0305800 Rorug07G0305900
rosa_samantha Rh7AG462600 Rh7BG432600 Rh7CG479400 Rh7DG448400
rosa_wichuraiana Rw7G038270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 687
AatII GACGTC 1 cut(s) 93
AccB1I GGYRCC 1 cut(s) 214
AccII CGCG 1 cut(s) 185
AciI CCGC 7 cut(s) 98, 218, 240, 243, 257, 293, 398
AclWI GGATC 3 cut(s) 74, 217, 399
AcsI RAATTY 1 cut(s) 517
AcuI CTGAAG 2 cut(s) 507, 569
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 4 cut(s) 117, 210, 592, 593
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 2 cut(s) 421, 842
AjnI CCWGG 2 cut(s) 116, 765
AluBI AGCT 7 cut(s) 76, 622, 681, 712, 752, 807, 888
AluI AGCT 7 cut(s) 76, 622, 681, 712, 752, 807, 888
Alw26I GTCTC 3 cut(s) 133, 365, 518
AlwI GGATC 3 cut(s) 74, 217, 399
AlwNI CAGNNNCTG 1 cut(s) 533
Ama87I CYCGRG 2 cut(s) 203, 210
AoxI GGCC 1 cut(s) 583
ApeKI GCWGC 4 cut(s) 10, 446, 749, 853
ApoI RAATTY 1 cut(s) 517
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 3 cut(s) 120, 428, 584
AsuHPI GGTGA 2 cut(s) 271, 674
AvaI CYCGRG 2 cut(s) 203, 210
AvaII GGWCC 2 cut(s) 120, 428
BaeGI GKGCMC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 214
BbsI GAAGAC 2 cut(s) 237, 557
BbvI GCAGC 4 cut(s) 22, 433, 761, 865
BccI CCATC 2 cut(s) 140, 736
BceAI ACGGC 2 cut(s) 142, 160
BciT130I CCWGG 2 cut(s) 118, 767
BclI TGATCA 1 cut(s) 664
BcoDI GTCTC 3 cut(s) 133, 365, 518
BfmI CTRYAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 176
BglII AGATCT 1 cut(s) 504
BisI GCNGC 7 cut(s) 11, 240, 243, 257, 447, 750, 854
BlsI GCNGC 7 cut(s) 12, 241, 244, 258, 448, 751, 855
Bme1390I CCNGG 2 cut(s) 118, 767
Bme18I GGWCC 2 cut(s) 120, 428
BmeT110I CYCGRG 2 cut(s) 203, 210
BmgT120I GGNCC 3 cut(s) 120, 428, 584
BmiI GGNNCC 4 cut(s) 216, 291, 430, 586
BmrFI CCNGG 2 cut(s) 118, 767
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 2 cut(s) 22, 433
BmuI ACTGGG 1 cut(s) 426
BoxI GACNNNNGTC 1 cut(s) 125
BpiI GAAGAC 2 cut(s) 237, 557
BpmI CTGGAG 1 cut(s) 281
Bpu10I CCTNAGC 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 4 cut(s) 117, 210, 592, 593
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 2 cut(s) 432, 664
BseBI CCWGG 2 cut(s) 118, 767
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 762
BseLI CCNNNNNNNGG 4 cut(s) 117, 210, 592, 593
BseMII CTCAG 2 cut(s) 153, 479
BseNI ACTGG 2 cut(s) 432, 664
BseSI GKGCMC 1 cut(s) 217
BseXI GCAGC 4 cut(s) 22, 433, 761, 865
BseYI CCCAGC 2 cut(s) 864, 870
BsgI GTGCAG 1 cut(s) 872
Bsh1236I CGCG 1 cut(s) 185
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 1 cut(s) 585
BshNI GGYRCC 1 cut(s) 214
BsiEI CGRYCG 1 cut(s) 183
BsiHKCI CYCGRG 2 cut(s) 203, 210
BsiSI CCGG 2 cut(s) 24, 287
BslFI GGGAC 2 cut(s) 149, 515
BslI CCNNNNNNNGG 4 cut(s) 117, 210, 592, 593
BsmAI GTCTC 3 cut(s) 133, 365, 518
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 2 cut(s) 149, 515
BsnI GGCC 1 cut(s) 585
BsoBI CYCGRG 2 cut(s) 203, 210
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 5 cut(s) 79, 222, 391, 504, 664
Bsp68I TCGCGA 1 cut(s) 185
BspACI CCGC 7 cut(s) 98, 218, 240, 243, 257, 293, 398
BspANI GGCC 1 cut(s) 585
BspCNI CTCAG 2 cut(s) 152, 478
BspFNI CGCG 1 cut(s) 185
BspLI GGNNCC 4 cut(s) 216, 291, 430, 586
BspPI GGATC 3 cut(s) 74, 217, 399
BspT107I GGYRCC 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 2 cut(s) 432, 664
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 5 cut(s) 79, 222, 391, 504, 664
BssNI GRCGYC 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 118, 767
Bst4CI ACNGT 1 cut(s) 529
BstACI GRCGYC 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 623
BstC8I GCNNGC 6 cut(s) 8, 25, 400, 562, 583, 624
BstDEI CTNAG 3 cut(s) 72, 139, 465
BstF5I GGATG 1 cut(s) 762
BstFNI CGCG 1 cut(s) 185
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 5 cut(s) 82, 225, 394, 507, 667
BstMAI GTCTC 3 cut(s) 133, 365, 518
BstMBI GATC 5 cut(s) 79, 222, 391, 504, 664
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 3 cut(s) 446, 470, 623
BstNI CCWGG 2 cut(s) 118, 767
BstNSI RCATGY 1 cut(s) 409
BstPAI GACNNNNGTC 1 cut(s) 125
BstSCI CCNGG 2 cut(s) 116, 765
BstSFI CTRYAG 1 cut(s) 450
BstSLI GKGCMC 1 cut(s) 217
BstUI CGCG 1 cut(s) 185
BstV1I GCAGC 4 cut(s) 22, 433, 761, 865
BstV2I GAAGAC 2 cut(s) 237, 557
BstX2I RGATCY 2 cut(s) 391, 504
BstXI CCANNNNNNTGG 1 cut(s) 259
BstYI RGATCY 2 cut(s) 391, 504
BsuRI GGCC 1 cut(s) 585
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 1 cut(s) 762
BtsI GCAGTG 2 cut(s) 640, 855
BtsIMutI CAGTG 3 cut(s) 336, 640, 855
BtuMI TCGCGA 1 cut(s) 185
Cac8I GCNNGC 6 cut(s) 8, 25, 400, 562, 583, 624
CaiI CAGNNNCTG 1 cut(s) 533
CfoI GCGC 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 3 cut(s) 120, 428, 584
Csp6I GTAC 1 cut(s) 197
CviAII CATG 4 cut(s) 253, 406, 675, 788
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 3 cut(s) 72, 139, 465
DpnI GATC 5 cut(s) 81, 224, 393, 506, 666
DpnII GATC 5 cut(s) 79, 222, 391, 504, 664
EciI GGCGGA 2 cut(s) 87, 282
Eco47I GGWCC 2 cut(s) 120, 428
Eco57I CTGAAG 2 cut(s) 507, 569
Eco88I CYCGRG 2 cut(s) 203, 210
EcoO109I RGGNCCY 1 cut(s) 428
EcoRII CCWGG 2 cut(s) 116, 765
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 4 cut(s) 256, 409, 678, 791
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 2 cut(s) 149, 515
FatI CATG 4 cut(s) 252, 405, 674, 787
FauI CCCGC 1 cut(s) 391
FbaI TGATCA 1 cut(s) 664
Fnu4HI GCNGC 7 cut(s) 11, 240, 243, 257, 447, 750, 854
FokI GGATG 1 cut(s) 749
Fsp4HI GCNGC 7 cut(s) 11, 240, 243, 257, 447, 750, 854
GlaI GCGC 1 cut(s) 174
GluI GCNGC 7 cut(s) 11, 240, 243, 257, 447, 750, 854
GsaI CCCAGC 2 cut(s) 868, 874
GsuI CTGGAG 1 cut(s) 281
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 1 cut(s) 585
HapII CCGG 2 cut(s) 24, 287
HhaI GCGC 1 cut(s) 175
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 4 cut(s) 256, 409, 678, 791
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 3 cut(s) 612, 724, 781
HindII GTYRAC 3 cut(s) 612, 724, 781
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 4 cut(s) 152, 187, 263, 326
HpaII CCGG 2 cut(s) 24, 287
HphI GGTGA 2 cut(s) 271, 674
Hpy166II GTNNAC 6 cut(s) 199, 573, 612, 724, 781, 814
Hpy188I TCNGA 7 cut(s) 112, 142, 151, 468, 513, 549, 669
Hpy188III TCNNGA 5 cut(s) 184, 191, 313, 389, 842
Hpy8I GTNNAC 6 cut(s) 199, 573, 612, 724, 781, 814
Hpy99I CGWCG 3 cut(s) 92, 95, 181
HpyAV CCTTC 5 cut(s) 309, 355, 376, 482, 848
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 2 cut(s) 90, 276
HpyCH4V TGCA 5 cut(s) 473, 626, 633, 674, 853
HpyF10VI GCNNNNNNNGC 3 cut(s) 446, 470, 623
HpyF3I CTNAG 3 cut(s) 72, 139, 465
HpySE526I ACGT 2 cut(s) 90, 276
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 4 cut(s) 256, 409, 678, 791
HspAI GCGC 1 cut(s) 173
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 664
Kzo9I GATC 5 cut(s) 79, 222, 391, 504, 664
LmnI GCTCC 4 cut(s) 67, 100, 295, 678
Lsp1109I GCAGC 4 cut(s) 22, 433, 761, 865
LweI GCATC 2 cut(s) 22, 433
MaeII ACGT 2 cut(s) 90, 276
MaeIII GTNAC 1 cut(s) 277
MalI GATC 5 cut(s) 81, 224, 393, 506, 666
MboI GATC 5 cut(s) 79, 222, 391, 504, 664
MboII GAAGA 5 cut(s) 242, 294, 468, 514, 562
MflI RGATCY 2 cut(s) 391, 504
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 2 cut(s) 459, 517
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 6 cut(s) 48, 111, 133, 148, 199, 306
MroNI GCCGGC 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 251
MspA1I CMGCKG 2 cut(s) 259, 752
MspI CCGG 2 cut(s) 24, 287
MspR9I CCNGG 2 cut(s) 118, 767
MvaI CCWGG 2 cut(s) 118, 767
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 3 cut(s) 446, 470, 623
NaeI GCCGGC 1 cut(s) 25
NdeII GATC 5 cut(s) 79, 222, 391, 504, 664
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 4 cut(s) 256, 409, 678, 791
NlaIV GGNNCC 4 cut(s) 216, 291, 430, 586
NmuCI GTSAC 1 cut(s) 277
NruI TCGCGA 1 cut(s) 185
NspI RCATGY 1 cut(s) 409
PciI ACATGT 1 cut(s) 405
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 189
PdiI GCCGGC 1 cut(s) 25
PfeI GAWTC 3 cut(s) 152, 187, 326
PkrI GCNGC 7 cut(s) 12, 241, 244, 258, 448, 751, 855
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 428
PscI ACATGT 1 cut(s) 405
PshAI GACNNNNGTC 1 cut(s) 125
PsiI TTATAA 1 cut(s) 687
Psp5II RGGWCCY 1 cut(s) 428
Psp6I CCWGG 2 cut(s) 116, 765
PspFI CCCAGC 2 cut(s) 864, 870
PspGI CCWGG 2 cut(s) 116, 765
PspN4I GGNNCC 4 cut(s) 216, 291, 430, 586
PspPI GGNCC 3 cut(s) 120, 428, 584
PspPPI RGGWCCY 1 cut(s) 428
PstNI CAGNNNCTG 1 cut(s) 533
PsuI RGATCY 2 cut(s) 391, 504
PvuII CAGCTG 1 cut(s) 752
RruI TCGCGA 1 cut(s) 185
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 251
SatI GCNGC 7 cut(s) 11, 240, 243, 257, 447, 750, 854
Sau3AI GATC 5 cut(s) 79, 222, 391, 504, 664
Sau96I GGNCC 3 cut(s) 120, 428, 584
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 2 cut(s) 118, 767
SduI GDGCHC 1 cut(s) 217
SfaNI GCATC 2 cut(s) 22, 433
SfcI CTRYAG 1 cut(s) 450
SinI GGWCC 2 cut(s) 120, 428
SmiMI CAYNNNNRTG 1 cut(s) 251
Sse9I AATT 2 cut(s) 459, 517
SsiI CCGC 7 cut(s) 98, 218, 240, 243, 257, 293, 398
StyD4I CCNGG 2 cut(s) 116, 765
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 2 cut(s) 93, 279
TaqI TCGA 1 cut(s) 78
TaqII GACCGA 1 cut(s) 169
TasI AATT 2 cut(s) 459, 517
TatI WGTACW 1 cut(s) 196
TauI GCSGC 3 cut(s) 242, 245, 259
TfiI GAWTC 3 cut(s) 152, 187, 326
TscAI CASTG 3 cut(s) 336, 640, 855
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 4 cut(s) 10, 446, 749, 853
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 639
TspGWI ACGGA 2 cut(s) 115, 298
TspRI CASTG 3 cut(s) 336, 640, 855
VpaK11BI GGWCC 2 cut(s) 120, 428
XapI RAATTY 1 cut(s) 517
XceI RCATGY 1 cut(s) 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
ZraI GACGTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.