Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012089

Physical Location & Seq

Genomic Coordinates Forward (+)

46848210 .. 46852842

Gene Structure 4633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1380800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAGCGACCACAAGGCGGCAGCTGCACCACCAGCACCTGATCACCCACCACCACCATCTCACTCCCAAGACTACGCTCCATACCCTAAGCTTGACCTCAATGACGTCGCTCCGCCTCCCCACTCCGAAACTTGGACCTCCGTCTCCATCGCCTCTGAACCGCCGAAATCGGAGGGTCCGCCGGTGCAGCCACCTGTGCCGCCGCCTGTGTCTCCACCGGTGTCCGATCCGGTGGTTCAAGCCGAGGCTCGCGGTCCCATCCCCGGCGACGCCGCCACCTCCATGCCGGCGGAATCCAATCCCTACGTTGCCACTCCTGCGCCGCCTCCCCCCTCCTCCGTCAAGAAGTCGATGGATTCAGTGAAAGATGCGCTTGGAAAATGGGGAAAGAAGGCTGCGGAGGCCACCAAGAAGGCTGAGGATCTTGCTGGCAACATGTGGCAACACTTGAAGACAGGACCGAGTTTTGCTGATGCTGCTGTGACAAGAATTGCTCAGAGCACTAAAGTACTGGCAGAAGGTGGTTATGAGAAGATCTTTCGACAAAATTTTGAGACTGTCCCAGAGGAGCAACTTCAAAAGACATTTGCTTGCTACTTATCTACATCTGCTGGTCCAGTAATGGGAACTCTATTTTTGTCATCAGCGAAGCTTGCATTTTGCAGTGACGATCCTCTTTCATACAAAGTAGGTGACCGGACTGAATGGAGCTATTATAAGGTGATTATTCCGTTACATCAGCTGAAGGCAGTCAATCCATCAACGAGCAAAGTGAAAGCAGCTGAAAAGTACATCCAGGTCGTCTCTGTTGACAACCATGAGTTTTGGTTCATGAGCTTTGTGCACTACGATAGTGCTGTGAAACATCTTCAAGAAGTAGTGCAGCCGCACCCTCAGAGTCAGCCCCAGAGCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03420 ko04066 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05200 ko05211 map03420 map04066 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05200 map05211

Pfam Domains

Protein Families

GRAM

Protein Analysis

306

Amino Acids

32.88

Weight (kDa)

6.06

Isoelectric Point (pI)

56.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAM	PF02893	179 - 295	1.1e-19	GRAM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28200 AT1G28200
fragaria_vesca	FvH4_5g35910
malus_domestica	MD08G1192100.v1.1 MD15G1380800.v1.1
prunus_persica	Prupe.1G527000_v2.0.a1
pyrus_communis	pycom08g16590 pycom15g34130
rosa_chinensis	RchiOBHm_Chr7g0237641
rosa_laevigata	RLG00000000979
rosa_multiflora	Rmu_sc0007826.1_g000010
rosa_roxburghii	Rroxscaffold_3G00223910
rosa_rugosa	Rorug07G0305800 Rorug07G0305900
rosa_samantha	Rh7AG462600 Rh7BG432600 Rh7CG479400 Rh7DG448400
rosa_wichuraiana	Rw7G038270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	717
AatII	GACGTC	1 cut(s)	108
AccII	CGCG	1 cut(s)	252
AclWI	GGATC	3 cut(s)	221, 429, 665
AcsI	RAATTY	1 cut(s)	547
AcuI	CTGAAG	1 cut(s)	764
AcyI	GRCGYC	2 cut(s)	105, 270
AfaI	GTAC	2 cut(s)	510, 791
AfiI	CCNNNNNNNGG	4 cut(s)	16, 132, 263, 623
AflIII	ACRYGT	1 cut(s)	435
AgeI	ACCGGT	1 cut(s)	217
AgsI	TTSAA	4 cut(s)	239, 451, 578, 872
AjnI	CCWGG	1 cut(s)	795
AluBI	AGCT	7 cut(s)	23, 91, 652, 711, 742, 782, 837
AluI	AGCT	7 cut(s)	23, 91, 652, 711, 742, 782, 837
Alw21I	GWGCWC	2 cut(s)	503, 846
Alw26I	GTCTC	4 cut(s)	148, 216, 548, 808
Alw44I	GTGCAC	1 cut(s)	842
AlwI	GGATC	3 cut(s)	221, 429, 665
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	402
ApaLI	GTGCAC	1 cut(s)	842
ApeKI	GCWGC	7 cut(s)	20, 23, 187, 395, 476, 779, 883
ApoI	RAATTY	1 cut(s)	547
AsiGI	ACCGGT	1 cut(s)	217
AspLEI	GCGC	3 cut(s)	322, 373, 914
AspS9I	GGNCC	5 cut(s)	135, 176, 254, 458, 614
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	3 cut(s)	35, 704, 733
AvaII	GGWCC	5 cut(s)	135, 176, 254, 458, 614
BaeGI	GKGCMC	1 cut(s)	846
BbsI	GAAGAC	1 cut(s)	458
Bbv12I	GWGCWC	2 cut(s)	503, 846
BbvCI	CCTCAGC	1 cut(s)	417
BbvI	GCAGC	7 cut(s)	10, 32, 199, 382, 463, 791, 895
BccI	CCATC	5 cut(s)	64, 155, 266, 346, 766
BciT130I	CCWGG	1 cut(s)	797
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	4 cut(s)	148, 216, 548, 808
BglII	AGATCT	1 cut(s)	534
BmcAI	AGTACT	1 cut(s)	510
Bme1390I	CCNGG	2 cut(s)	264, 797
Bme18I	GGWCC	5 cut(s)	135, 176, 254, 458, 614
BmgT120I	GGNCC	5 cut(s)	135, 176, 254, 458, 614
BmiI	GGNNCC	2 cut(s)	177, 256
BmrFI	CCNGG	2 cut(s)	264, 797
BmsI	GCATC	2 cut(s)	358, 463
BoxI	GACNNNNGTC	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	458
Bpu10I	CCTNAGC	2 cut(s)	87, 417
BpuMI	CCSGG	1 cut(s)	264
BsaHI	GRCGYC	2 cut(s)	105, 270
BsaJI	CCNNGG	2 cut(s)	243, 262
BsaWI	WCCGGW	3 cut(s)	217, 229, 696
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 132, 263, 623
Bse118I	RCCGGY	3 cut(s)	181, 217, 286
Bse1I	ACTGG	2 cut(s)	516, 617
BseBI	CCWGG	1 cut(s)	797
BseDI	CCNNGG	2 cut(s)	243, 262
BseGI	GGATG	2 cut(s)	258, 792
BseLI	CCNNNNNNNGG	4 cut(s)	16, 132, 263, 623
BseMII	CTCAG	3 cut(s)	408, 509, 908
BseNI	ACTGG	2 cut(s)	516, 617
BseRI	GAGGAG	2 cut(s)	325, 581
BseSI	GKGCMC	1 cut(s)	846
BseXI	GCAGC	7 cut(s)	10, 32, 199, 382, 463, 791, 895
BsgI	GTGCAG	3 cut(s)	9, 206, 902
Bsh1236I	CGCG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	404
BshTI	ACCGGT	1 cut(s)	217
BsiHKAI	GWGCWC	2 cut(s)	503, 846
BsiSI	CCGG	6 cut(s)	182, 218, 230, 264, 287, 697
BslFI	GGGAC	2 cut(s)	240, 545
BslI	CCNNNNNNNGG	4 cut(s)	16, 132, 263, 623
BsmAI	GTCTC	4 cut(s)	148, 216, 548, 808
BsmBI	CGTCTC	2 cut(s)	148, 808
BsmFI	GGGAC	2 cut(s)	240, 545
BsnI	GGCC	1 cut(s)	404
Bsp1286I	GDGCHC	2 cut(s)	503, 846
Bsp143I	GATC	5 cut(s)	40, 226, 421, 534, 670
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	3 cut(s)	409, 508, 907
BspFNI	CGCG	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	831
BspLI	GGNNCC	2 cut(s)	177, 256
BspPI	GGATC	3 cut(s)	221, 429, 665
BsrFI	RCCGGY	3 cut(s)	181, 217, 286
BsrI	ACTGG	2 cut(s)	516, 617
BssAI	RCCGGY	3 cut(s)	181, 217, 286
BssECI	CCNNGG	2 cut(s)	243, 262
BssMI	GATC	5 cut(s)	40, 226, 421, 534, 670
BssNI	GRCGYC	2 cut(s)	105, 270
Bst2UI	CCWGG	1 cut(s)	797
Bst4CI	ACNGT	1 cut(s)	559
BstACI	GRCGYC	2 cut(s)	105, 270
BstC8I	GCNNGC	5 cut(s)	250, 288, 430, 592, 654
BstDEI	CTNAG	4 cut(s)	87, 417, 495, 894
BstEII	GGTNACC	1 cut(s)	692
BstF5I	GGATG	2 cut(s)	258, 792
BstFNI	CGCG	1 cut(s)	252
BstHHI	GCGC	3 cut(s)	322, 373, 914
BstKTI	GATC	5 cut(s)	43, 229, 424, 537, 673
BstMAI	GTCTC	4 cut(s)	148, 216, 548, 808
BstMBI	GATC	5 cut(s)	40, 226, 421, 534, 670
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 32, 187, 196, 317, 401, 476, 653
BstNI	CCWGG	1 cut(s)	797
BstNSI	RCATGY	1 cut(s)	439
BstPAI	GACNNNNGTC	1 cut(s)	140
BstPI	GGTNACC	1 cut(s)	692
BstSCI	CCNGG	2 cut(s)	262, 795
BstSLI	GKGCMC	1 cut(s)	846
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	7 cut(s)	10, 32, 199, 382, 463, 791, 895
BstV2I	GAAGAC	1 cut(s)	458
BstX2I	RGATCY	2 cut(s)	421, 534
BstYI	RGATCY	2 cut(s)	421, 534
BsuRI	GGCC	1 cut(s)	404
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	258, 792
BtsI	GCAGTG	1 cut(s)	670
BtsIMutI	CAGTG	2 cut(s)	366, 670
Cac8I	GCNNGC	5 cut(s)	250, 288, 430, 592, 654
CaiI	CAGNNNCTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	831
CfoI	GCGC	3 cut(s)	322, 373, 914
Cfr10I	RCCGGY	3 cut(s)	181, 217, 286
Cfr13I	GGNCC	5 cut(s)	135, 176, 254, 458, 614
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	509, 790
CspAI	ACCGGT	1 cut(s)	217
CviAII	CATG	4 cut(s)	283, 436, 818, 832
CviQI	GTAC	2 cut(s)	509, 790
DdeI	CTNAG	4 cut(s)	87, 417, 495, 894
DpnI	GATC	5 cut(s)	42, 228, 423, 536, 672
DpnII	GATC	5 cut(s)	40, 226, 421, 534, 670
EciI	GGCGGA	3 cut(s)	102, 168, 305
Eco47I	GGWCC	5 cut(s)	135, 176, 254, 458, 614
Eco57I	CTGAAG	1 cut(s)	764
Eco91I	GGTNACC	1 cut(s)	692
EcoO65I	GGTNACC	1 cut(s)	692
EcoRII	CCWGG	1 cut(s)	795
Esp3I	CGTCTC	2 cut(s)	148, 808
FaeI	CATG	4 cut(s)	286, 439, 821, 835
FaiI	YATR	9 cut(s)	82, 284, 437, 528, 682, 717, 819, 833, 916
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	2 cut(s)	240, 545
FatI	CATG	4 cut(s)	282, 435, 817, 831
FbaI	TGATCA	1 cut(s)	40
FokI	GGATG	2 cut(s)	245, 779
GlaI	GCGC	3 cut(s)	321, 372, 913
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	6 cut(s)	182, 218, 230, 264, 287, 697
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	3 cut(s)	322, 373, 914
Hin1I	GRCGYC	2 cut(s)	105, 270
Hin1II	CATG	4 cut(s)	286, 439, 821, 835
Hin6I	GCGC	3 cut(s)	320, 371, 912
HinP1I	GCGC	3 cut(s)	320, 371, 912
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HindIII	AAGCTT	2 cut(s)	89, 650
HinfI	GANTC	3 cut(s)	293, 356, 898
HpaII	CCGG	6 cut(s)	182, 218, 230, 264, 287, 697
HphI	GGTGA	3 cut(s)	35, 704, 733
Hpy166II	GTNNAC	2 cut(s)	811, 844
Hpy188I	TCNGA	6 cut(s)	127, 157, 172, 226, 498, 897
Hpy188III	TCNNGA	3 cut(s)	343, 832, 872
Hpy8I	GTNNAC	2 cut(s)	811, 844
Hpy99I	CGWCG	2 cut(s)	110, 272
HpyAV	CCTTC	4 cut(s)	385, 406, 512, 739
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4IV	ACGT	2 cut(s)	105, 306
HpyCH4V	TGCA	6 cut(s)	26, 187, 656, 663, 844, 883
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 32, 187, 196, 317, 401, 476, 653
HpyF3I	CTNAG	4 cut(s)	87, 417, 495, 894
HpySE526I	ACGT	2 cut(s)	105, 306
Hsp92I	GRCGYC	2 cut(s)	105, 270
Hsp92II	CATG	4 cut(s)	286, 439, 821, 835
HspAI	GCGC	3 cut(s)	320, 371, 912
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	5 cut(s)	40, 226, 421, 534, 670
LmnI	GCTCC	4 cut(s)	82, 115, 568, 708
Lsp1109I	GCAGC	7 cut(s)	10, 32, 199, 382, 463, 791, 895
LweI	GCATC	2 cut(s)	358, 463
MaeII	ACGT	2 cut(s)	105, 306
MaeIII	GTNAC	4 cut(s)	481, 665, 692, 732
MalI	GATC	5 cut(s)	42, 228, 423, 536, 672
MboI	GATC	5 cut(s)	40, 226, 421, 534, 670
MboII	GAAGA	3 cut(s)	463, 544, 860
MflI	RGATCY	2 cut(s)	421, 534
MhlI	GDGCHC	2 cut(s)	503, 846
MluCI	AATT	2 cut(s)	489, 547
MlyI	GAGTC	1 cut(s)	907
MroNI	GCCGGC	1 cut(s)	286
MslI	CAYNNNNRTG	1 cut(s)	281
MspA1I	CMGCKG	3 cut(s)	23, 742, 782
MspI	CCGG	6 cut(s)	182, 218, 230, 264, 287, 697
MspR9I	CCNGG	2 cut(s)	264, 797
MvaI	CCWGG	1 cut(s)	797
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	8 cut(s)	23, 32, 187, 196, 317, 401, 476, 653
NaeI	GCCGGC	1 cut(s)	288
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	5 cut(s)	40, 226, 421, 534, 670
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	4 cut(s)	286, 439, 821, 835
NlaIV	GGNNCC	2 cut(s)	177, 256
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	3 cut(s)	481, 665, 692
NspI	RCATGY	1 cut(s)	439
PagI	TCATGA	1 cut(s)	831
PciI	ACATGT	1 cut(s)	435
PdiI	GCCGGC	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	293, 356
PinAI	ACCGGT	1 cut(s)	217
PleI	GAGTC	1 cut(s)	906
PpsI	GAGTC	1 cut(s)	906
PscI	ACATGT	1 cut(s)	435
PshAI	GACNNNNGTC	1 cut(s)	140
PsiI	TTATAA	1 cut(s)	717
Psp6I	CCWGG	1 cut(s)	795
PspEI	GGTNACC	1 cut(s)	692
PspGI	CCWGG	1 cut(s)	795
PspN4I	GGNNCC	2 cut(s)	177, 256
PspPI	GGNCC	5 cut(s)	135, 176, 254, 458, 614
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	2 cut(s)	421, 534
PvuII	CAGCTG	3 cut(s)	23, 742, 782
RsaI	GTAC	2 cut(s)	510, 791
RsaNI	GTAC	2 cut(s)	509, 790
RseI	CAYNNNNRTG	1 cut(s)	281
Sau3AI	GATC	5 cut(s)	40, 226, 421, 534, 670
Sau96I	GGNCC	5 cut(s)	135, 176, 254, 458, 614
ScaI	AGTACT	1 cut(s)	510
SchI	GAGTC	1 cut(s)	907
ScrFI	CCNGG	2 cut(s)	264, 797
SduI	GDGCHC	2 cut(s)	503, 846
SfaNI	GCATC	2 cut(s)	358, 463
SgrAI	CRCCGGYG	2 cut(s)	181, 217
SinI	GGWCC	5 cut(s)	135, 176, 254, 458, 614
SmiMI	CAYNNNNRTG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	489, 547
StyD4I	CCNGG	2 cut(s)	262, 795
TaaI	ACNGT	1 cut(s)	559
TaiI	ACGT	2 cut(s)	108, 309
TaqI	TCGA	2 cut(s)	350, 541
TaqII	GACCGA	1 cut(s)	475
TasI	AATT	2 cut(s)	489, 547
TatI	WGTACW	2 cut(s)	508, 789
TauI	GCSGC	6 cut(s)	20, 202, 205, 275, 325, 889
TfiI	GAWTC	2 cut(s)	293, 356
TscAI	CASTG	2 cut(s)	366, 670
TseFI	GTSAC	3 cut(s)	481, 665, 692
TseI	GCWGC	7 cut(s)	20, 23, 187, 395, 476, 779, 883
Tsp45I	GTSAC	3 cut(s)	481, 665, 692
TspDTI	ATGAA	2 cut(s)	669, 820
TspGWI	ACGGA	3 cut(s)	130, 328, 720
TspRI	CASTG	2 cut(s)	366, 670
VneI	GTGCAC	1 cut(s)	842
VpaK11BI	GGWCC	5 cut(s)	135, 176, 254, 458, 614
XapI	RAATTY	1 cut(s)	547
XceI	RCATGY	1 cut(s)	439
ZraI	GACGTC	1 cut(s)	106
ZrmI	AGTACT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.