Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012106

Physical Location & Seq

Genomic Coordinates Reverse (-)

9885400 .. 9887478

Gene Structure 2079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAGAATTCACCGAGATACAGAGAAGCGACGAATCTGATTCCGTCGCCGAGATGTCACAACAGCAACAACAGTTGCGGTATGAGCAGTAGCAGTGAAAGTAACAAACCACCAACAACTCCGACCCGACACGTAACCACAAGATCCGAATCCGGTAACCCGTACCCGACAACATTCGTCCAAGCAGATACTTCTTCCTTCAAACAAGTCGTCCAGATGCTAACCGGATCCGCCGAGAGACCCAAACACGGTTCATCTCTCAAACCAAACCCGACCCATCATCAACCCGACCCAAGATCCACTCCTTCTTCTTTCTCAATCCCACCAATCAAAGCCGTACCTAACAAGAAACAGTCTTCTTCTTCAGCATCAGGGTTTCGTCTCTACGAGCGTCGTAATTCAATGAAGAATCTCAAAATCAATCCTTTAAACCCGGTTTTTAACCCGGTTAATTCAGCTTTCTCTCCCCGTAAACCGGAGATCCTCTCTCCAAGCATCTTAGATTTCCCATCTCTCGTTCTCAGCCCGGTTACGCCTCTTATACCCGACCCGTTTGATCGATCCGGGTCATCAAACCAAAGCCCCAACGAGCTTGCTGCGGAGGAGAAAGCAATGAAAGAGAGAGGCTTTTATTTGCATCCATCTCCGGCAACAACTCCGATGGATCCAGAGCCTCGACTTCTTCCTCTATTCCCGGTGACTTCTCCTAGAGTCTCAGGTTCTTCATCAGCTTCTACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0010185 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0043433 GO:0044092 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051245 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

247

Amino Acids

26.86

Weight (kDa)

9.8

Isoelectric Point (pI)

68.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	54 - 77	1.7e-10	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28280 AT1G28280
fragaria_vesca	FvH4_3g09030 FvH4_3g09030 FvH4_3g09030 FvH4_3g09030
malus_domestica	MD00G1116300.v1.1 MD10G1293000.v1.1
prunus_persica	Prupe.4G048900_v2.0.a1
pyrus_communis	pycom10g24500
rosa_chinensis	RchiOBHm_Chr5g0008641
rosa_laevigata	RLG00000031589
rosa_multiflora	Rmu_sc0001665.1_g000029
rosa_rugosa	Rorug04G0437600
rosa_samantha	Rh5AG066200 Rh5BG063500 Rh5CG073700 Rh5DG062700
rosa_wichuraiana	Rw5G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	78, 231, 599
AclWI	GGATC	8 cut(s)	138, 222, 235, 291, 475, 555, 659, 672
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	2 cut(s)	164, 339
AfiI	CCNNNNNNNGG	2 cut(s)	248, 475
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	202, 402
AluBI	AGCT	3 cut(s)	458, 592, 731
AluI	AGCT	3 cut(s)	458, 592, 731
Alw26I	GTCTC	3 cut(s)	232, 386, 718
AlwI	GGATC	8 cut(s)	138, 222, 235, 291, 475, 555, 659, 672
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	1 cut(s)	7
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
AsuC2I	CCSGG	5 cut(s)	434, 446, 527, 565, 695
AsuHPI	GGTGA	2 cut(s)	3, 709
BamHI	GGATCC	2 cut(s)	227, 664
BbsI	GAAGAC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	4 cut(s)	285, 517, 649, 655
BceAI	ACGGC	1 cut(s)	320
BcgI	CGANNNNNNTGC	2 cut(s)	578, 612
BcnI	CCSGG	5 cut(s)	434, 446, 527, 565, 695
BcoDI	GTCTC	3 cut(s)	232, 386, 718
BfaI	CTAG	1 cut(s)	708
BisI	GCNGC	1 cut(s)	597
BlsI	GCNGC	1 cut(s)	598
Bme1390I	CCNGG	5 cut(s)	434, 446, 527, 565, 695
BmiI	GGNNCC	2 cut(s)	229, 666
BmrFI	CCNGG	5 cut(s)	434, 446, 527, 565, 695
BmsI	GCATC	4 cut(s)	207, 377, 504, 646
BpiI	GAAGAC	1 cut(s)	348
BplI	GAGNNNNNCTC	2 cut(s)	470, 502
BpuMI	CCSGG	5 cut(s)	434, 446, 527, 565, 695
Bsa29I	ATCGAT	1 cut(s)	559
BsaAI	YACGTR	1 cut(s)	133
BsaBI	GATNNNNATC	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	232
BsaWI	WCCGGW	3 cut(s)	152, 224, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 475
Bse3DI	GCAATG	1 cut(s)	618
Bse8I	GATNNNNATC	1 cut(s)	148
BseCI	ATCGAT	1 cut(s)	559
BseGI	GGATG	1 cut(s)	637
BseJI	GATNNNNATC	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	248, 475
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	2 cut(s)	535, 729
BseRI	GAGGAG	1 cut(s)	617
BseXI	GCAGC	1 cut(s)	583
BshVI	ATCGAT	1 cut(s)	559
BsiSI	CCGG	9 cut(s)	153, 225, 434, 446, 476, 527, 564, 647, 695
BslI	CCNNNNNNNGG	2 cut(s)	248, 475
BsmAI	GTCTC	3 cut(s)	232, 386, 718
BsmBI	CGTCTC	1 cut(s)	386
Bso31I	GGTCTC	1 cut(s)	232
Bsp143I	GATC	7 cut(s)	143, 227, 296, 480, 556, 560, 664
BspACI	CCGC	3 cut(s)	78, 231, 599
BspCNI	CTCAG	2 cut(s)	534, 728
BspDI	ATCGAT	1 cut(s)	559
BspLI	GGNNCC	2 cut(s)	229, 666
BspPI	GGATC	8 cut(s)	138, 222, 235, 291, 475, 555, 659, 672
BspTNI	GGTCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	618
BssMI	GATC	7 cut(s)	143, 227, 296, 480, 556, 560, 664
Bst4CI	ACNGT	3 cut(s)	74, 251, 354
BstBAI	YACGTR	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	3 cut(s)	499, 521, 715
BstEII	GGTNACC	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	637
BstKTI	GATC	7 cut(s)	146, 230, 299, 483, 559, 563, 667
BstMAI	GTCTC	3 cut(s)	232, 386, 718
BstMBI	GATC	7 cut(s)	143, 227, 296, 480, 556, 560, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstPI	GGTNACC	1 cut(s)	155
BstSCI	CCNGG	5 cut(s)	432, 444, 525, 563, 693
BstV1I	GCAGC	1 cut(s)	583
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	5 cut(s)	143, 227, 296, 480, 664
BstYI	RGATCY	5 cut(s)	143, 227, 296, 480, 664
Bsu15I	ATCGAT	1 cut(s)	559
BsuTUI	ATCGAT	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	637
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	594
ClaI	ATCGAT	1 cut(s)	559
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	163, 338
CviJI	RGCY	8 cut(s)	335, 458, 525, 582, 592, 627, 673, 731
CviKI_1	RGCY	8 cut(s)	335, 458, 525, 582, 592, 627, 673, 731
CviQI	GTAC	2 cut(s)	163, 338
DdeI	CTNAG	3 cut(s)	499, 521, 715
DpnI	GATC	7 cut(s)	145, 229, 298, 482, 558, 562, 666
DpnII	GATC	7 cut(s)	143, 227, 296, 480, 556, 560, 664
DraI	TTTAAA	1 cut(s)	429
EciI	GGCGGA	1 cut(s)	220
Eco31I	GGTCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	348
Eco91I	GGTNACC	1 cut(s)	155
EcoO65I	GGTNACC	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	7
Esp3I	CGTCTC	1 cut(s)	386
FaiI	YATR	2 cut(s)	83, 542
Fnu4HI	GCNGC	1 cut(s)	597
FokI	GGATG	1 cut(s)	624
Fsp4HI	GCNGC	1 cut(s)	597
FspBI	CTAG	1 cut(s)	708
GluI	GCNGC	1 cut(s)	597
HapII	CCGG	9 cut(s)	153, 225, 434, 446, 476, 527, 564, 647, 695
HgaI	GACGC	1 cut(s)	380
HinfI	GANTC	5 cut(s)	34, 40, 149, 409, 711
HpaII	CCGG	9 cut(s)	153, 225, 434, 446, 476, 527, 564, 647, 695
HphI	GGTGA	2 cut(s)	3, 709
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	4 cut(s)	39, 123, 148, 660
Hpy188III	TCNNGA	3 cut(s)	214, 668, 741
Hpy8I	GTNNAC	1 cut(s)	473
Hpy99I	CGWCG	3 cut(s)	34, 49, 396
HpyAV	CCTTC	2 cut(s)	208, 315
HpyCH4III	ACNGT	3 cut(s)	74, 251, 354
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	3 cut(s)	499, 521, 715
HpySE526I	ACGT	1 cut(s)	132
Kzo9I	GATC	7 cut(s)	143, 227, 296, 480, 556, 560, 664
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	4 cut(s)	207, 377, 504, 646
MaeI	CTAG	1 cut(s)	708
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	6 cut(s)	56, 101, 133, 155, 529, 697
MalI	GATC	7 cut(s)	145, 229, 298, 482, 558, 562, 666
MboI	GATC	7 cut(s)	143, 227, 296, 480, 556, 560, 664
MboII	GAAGA	8 cut(s)	186, 300, 348, 351, 354, 418, 674, 714
MflI	RGATCY	5 cut(s)	143, 227, 296, 480, 664
MluCI	AATT	3 cut(s)	7, 397, 451
MlyI	GAGTC	1 cut(s)	720
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	6 cut(s)	494, 546, 595, 617, 684, 696
MseI	TTAA	3 cut(s)	428, 441, 450
MspI	CCGG	9 cut(s)	153, 225, 434, 446, 476, 527, 564, 647, 695
MspR9I	CCNGG	5 cut(s)	434, 446, 527, 565, 695
MwoI	GCNNNNNNNGC	1 cut(s)	84
NciI	CCSGG	5 cut(s)	434, 446, 527, 565, 695
NdeII	GATC	7 cut(s)	143, 227, 296, 480, 556, 560, 664
NlaIV	GGNNCC	2 cut(s)	229, 666
NmeAIII	GCCGAG	2 cut(s)	75, 259
NmuCI	GTSAC	2 cut(s)	56, 697
PfeI	GAWTC	4 cut(s)	34, 40, 149, 409
PkrI	GCNGC	1 cut(s)	598
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
Ppu21I	YACGTR	1 cut(s)	133
PspEI	GGTNACC	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	229, 666
PsuI	RGATCY	5 cut(s)	143, 227, 296, 480, 664
RsaI	GTAC	2 cut(s)	164, 339
RsaNI	GTAC	2 cut(s)	163, 338
SaqAI	TTAA	3 cut(s)	428, 441, 450
SatI	GCNGC	1 cut(s)	597
Sau3AI	GATC	7 cut(s)	143, 227, 296, 480, 556, 560, 664
SchI	GAGTC	1 cut(s)	720
ScrFI	CCNGG	5 cut(s)	434, 446, 527, 565, 695
SetI	ASST	6 cut(s)	135, 343, 460, 594, 721, 733
SfaNI	GCATC	4 cut(s)	207, 377, 504, 646
Sse9I	AATT	3 cut(s)	7, 397, 451
SsiI	CCGC	3 cut(s)	78, 231, 599
SspMI	CTAG	1 cut(s)	708
StyD4I	CCNGG	5 cut(s)	432, 444, 525, 563, 693
TaaI	ACNGT	3 cut(s)	74, 251, 354
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	2 cut(s)	559, 676
TasI	AATT	3 cut(s)	7, 397, 451
TfiI	GAWTC	4 cut(s)	34, 40, 149, 409
Tru1I	TTAA	3 cut(s)	428, 441, 450
Tru9I	TTAA	3 cut(s)	428, 441, 450
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	2 cut(s)	56, 697
TseI	GCWGC	1 cut(s)	596
Tsp45I	GTSAC	2 cut(s)	56, 697
TspDTI	ATGAA	4 cut(s)	243, 419, 629, 714
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	7
XspI	CTAG	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.