Rh5BG063500

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012106
Physical Location & Seq
Forward (+)
5244441 .. 5246251
1811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG063500.1

Sequence Viewer

Length: 741 bp
ATGGAAACCTCTCCCAGAAGAGAGACTAACCCTAACCCTAACCCTAACCCAAACGCCCTCCCATCCCCAAACAGCAGCAGCACAAGCAGCACCAACAGCAACAACAATGGACTCCAAGCTCCCCCAACAACCCCAACCGCCCAACCCCCGAAACCCATGACCAGATCCGACTCCGCTAACCCTTACCCGACCACCTTCGTCCAGGCCGACACCTCCTCTTTCAAACAAGTCGTCCAAATGCTGACCGGATCCTCCGAAACAGCCAGCAAGGTCGCGTGTTCGAAACACGATGCCAGACACAACATCCCGCCGATCAAGTCCACCCCCAAGAAGCAGCAACAGCAACAGAACTCCGGTTTCAAGCTCTACGAGCGCCGCAACAACGCCCTCAAGAATCTCCGGCTCAACCCTCTTATCCCAATCCCCGTGTTCAATTCCAACAACAACTCCGGGTTCTCGCCGCGAAACCCGGAGATTTTGTCGCCGAGCATTCTCGATTTCCCGGCGCTGGTGCTCAGCCCCGTCACGCCGCTCATACCCGACCCGTTTGACCGGGCCGGGTCGGCGAATTTCGGGCATGGCTGCTCACAGTTGAACAAGGAGGCCGAAGAGAAAGCGATCAAAGAAAAAGGGTTTTACTTGCACCCGTCGCCGACTACGACGCCGAGGGAATCGGAGCCCCGATTGTTGCCCTTGTTCCCGACGACGTCGCCTAGAGCTTCAGGTTCATCTCCTTCTTGA

Protein Analysis

246

Amino Acids

26.63

Weight (kDa)

9.69

Isoelectric Point (pI)

62.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 61 - 87 1.9e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28280 AT1G28280
fragaria_vesca FvH4_3g09030 FvH4_3g09030 FvH4_3g09030 FvH4_3g09030
malus_domestica MD00G1116300.v1.1 MD10G1293000.v1.1
prunus_persica Prupe.4G048900_v2.0.a1
pyrus_communis pycom10g24500
rosa_chinensis RchiOBHm_Chr5g0008641
rosa_laevigata RLG00000031589
rosa_multiflora Rmu_sc0001665.1_g000029
rosa_rugosa Rorug04G0437600
rosa_samantha Rh5AG066200 Rh5BG063500 Rh5CG073700 Rh5DG062700
rosa_wichuraiana Rw5G006280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 710
AccBSI CCGCTC 1 cut(s) 532
AccII CGCG 2 cut(s) 275, 463
AciI CCGC 6 cut(s) 138, 174, 308, 376, 461, 530
AclWI GGATC 3 cut(s) 159, 243, 256
AcsI RAATTY 1 cut(s) 568
AcuI CTGAAG 1 cut(s) 705
AcyI GRCGYC 2 cut(s) 662, 707
AfiI CCNNNNNNNGG 1 cut(s) 508
AgsI TTSAA 4 cut(s) 223, 361, 433, 595
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 3 cut(s) 119, 364, 719
AluI AGCT 3 cut(s) 119, 364, 719
Alw21I GWGCWC 1 cut(s) 516
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 3 cut(s) 159, 243, 256
AoxI GGCC 3 cut(s) 204, 555, 603
ApeKI GCWGC 5 cut(s) 75, 78, 87, 334, 582
ApoI RAATTY 1 cut(s) 568
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
AspLEI GCGC 2 cut(s) 375, 508
AspS9I GGNCC 1 cut(s) 555
AsuC2I CCSGG 5 cut(s) 451, 470, 503, 554, 559
AsuII TTCGAA 1 cut(s) 281
BamHI GGATCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 681
Bbv12I GWGCWC 1 cut(s) 516
BbvI GCAGC 5 cut(s) 87, 90, 99, 346, 569
BccI CCATC 1 cut(s) 70
BciT130I CCWGG 1 cut(s) 203
BcnI CCSGG 5 cut(s) 451, 470, 503, 554, 559
BcoDI GTCTC 1 cut(s) 17
BfaI CTAG 1 cut(s) 714
BfoI RGCGCY 2 cut(s) 376, 509
BglI GCCNNNNNGGC 1 cut(s) 563
BisI GCNGC 8 cut(s) 76, 79, 88, 335, 376, 461, 530, 583
BlpI GCTNAGC 1 cut(s) 515
BlsI GCNGC 8 cut(s) 77, 80, 89, 336, 377, 462, 531, 584
Bme1390I CCNGG 6 cut(s) 203, 451, 470, 503, 554, 559
BmgT120I GGNCC 1 cut(s) 555
BmiI GGNNCC 2 cut(s) 250, 678
BmrFI CCNGG 6 cut(s) 203, 451, 470, 503, 554, 559
BmsI GCATC 1 cut(s) 280
Bpu1102I GCTNAGC 1 cut(s) 515
Bpu14I TTCGAA 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 5 cut(s) 451, 470, 503, 554, 559
BsaHI GRCGYC 2 cut(s) 662, 707
BsaJI CCNNGG 1 cut(s) 665
BsaWI WCCGGW 2 cut(s) 245, 353
BsaXI ACNNNNNCTCC 4 cut(s) 431, 461, 464, 494
Bsc4I CCNNNNNNNGG 1 cut(s) 508
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 665
BseGI GGATG 2 cut(s) 62, 303
BseLI CCNNNNNNNGG 1 cut(s) 508
BseMII CTCAG 1 cut(s) 529
BseRI GAGGAG 1 cut(s) 205
BseXI GCAGC 5 cut(s) 87, 90, 99, 346, 569
Bsh1236I CGCG 2 cut(s) 275, 463
BshFI GGCC 3 cut(s) 206, 557, 605
BsiHKAI GWGCWC 1 cut(s) 516
BsiSI CCGG 8 cut(s) 246, 354, 400, 450, 470, 503, 553, 558
BslI CCNNNNNNNGG 1 cut(s) 508
BsmAI GTCTC 1 cut(s) 17
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 3 cut(s) 206, 557, 605
Bsp119I TTCGAA 1 cut(s) 281
Bsp1286I GDGCHC 2 cut(s) 516, 681
Bsp143I GATC 4 cut(s) 164, 248, 312, 618
Bsp1720I GCTNAGC 1 cut(s) 515
BspACI CCGC 6 cut(s) 138, 174, 308, 376, 461, 530
BspANI GGCC 3 cut(s) 206, 557, 605
BspCNI CTCAG 1 cut(s) 528
BspFNI CGCG 2 cut(s) 275, 463
BspLI GGNNCC 2 cut(s) 250, 678
BspPI GGATC 3 cut(s) 159, 243, 256
BspT104I TTCGAA 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 532
BssECI CCNNGG 1 cut(s) 665
BssMI GATC 4 cut(s) 164, 248, 312, 618
BssNI GRCGYC 2 cut(s) 662, 707
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 591
Bst6I CTCTTC 2 cut(s) 13, 603
BstACI GRCGYC 2 cut(s) 662, 707
BstBI TTCGAA 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 515
BstF5I GGATG 2 cut(s) 62, 303
BstFNI CGCG 2 cut(s) 275, 463
BstH2I RGCGCY 2 cut(s) 376, 509
BstHHI GCGC 2 cut(s) 375, 508
BstKTI GATC 4 cut(s) 167, 251, 315, 621
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 4 cut(s) 164, 248, 312, 618
BstMWI GCNNNNNNNGC 7 cut(s) 84, 87, 96, 340, 370, 563, 649
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 6 cut(s) 201, 449, 468, 501, 552, 557
BstUI CGCG 2 cut(s) 275, 463
BstV1I GCAGC 5 cut(s) 87, 90, 99, 346, 569
BstX2I RGATCY 2 cut(s) 164, 248
BstYI RGATCY 2 cut(s) 164, 248
BsuRI GGCC 3 cut(s) 206, 557, 605
BtsCI GGATG 2 cut(s) 62, 303
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 2 cut(s) 375, 508
Cfr13I GGNCC 1 cut(s) 555
CseI GACGC 1 cut(s) 670
CviAII CATG 2 cut(s) 157, 578
DdeI CTNAG 1 cut(s) 515
DpnI GATC 4 cut(s) 166, 250, 314, 620
DpnII GATC 4 cut(s) 164, 248, 312, 618
Eam1104I CTCTTC 2 cut(s) 13, 603
EarI CTCTTC 2 cut(s) 13, 603
Eco24I GRGCYC 1 cut(s) 681
Eco57I CTGAAG 1 cut(s) 705
EcoRII CCWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 681
FaeI CATG 2 cut(s) 160, 581
FaiI YATR 3 cut(s) 158, 536, 579
FatI CATG 2 cut(s) 156, 577
FauI CCCGC 1 cut(s) 315
Fnu4HI GCNGC 8 cut(s) 76, 79, 88, 335, 376, 461, 530, 583
FokI GGATG 2 cut(s) 49, 290
FriOI GRGCYC 1 cut(s) 681
Fsp4HI GCNGC 8 cut(s) 76, 79, 88, 335, 376, 461, 530, 583
FspBI CTAG 1 cut(s) 714
GlaI GCGC 2 cut(s) 374, 507
GluI GCNGC 8 cut(s) 76, 79, 88, 335, 376, 461, 530, 583
HaeII RGCGCY 2 cut(s) 376, 509
HaeIII GGCC 3 cut(s) 206, 557, 605
HapII CCGG 8 cut(s) 246, 354, 400, 450, 470, 503, 553, 558
HgaI GACGC 1 cut(s) 670
HhaI GCGC 2 cut(s) 375, 508
Hin1I GRCGYC 2 cut(s) 662, 707
Hin1II CATG 2 cut(s) 160, 581
Hin6I GCGC 2 cut(s) 373, 506
HinP1I GCGC 2 cut(s) 373, 506
HinfI GANTC 4 cut(s) 111, 170, 394, 671
HpaII CCGG 8 cut(s) 246, 354, 400, 450, 470, 503, 553, 558
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 3 cut(s) 169, 256, 676
Hpy188III TCNNGA 4 cut(s) 391, 494, 700, 738
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 5 cut(s) 652, 664, 706, 709, 712
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 591
HpyCH4IV ACGT 1 cut(s) 707
HpyCH4V TGCA 1 cut(s) 643
HpyF10VI GCNNNNNNNGC 7 cut(s) 84, 87, 96, 340, 370, 563, 649
HpyF3I CTNAG 1 cut(s) 515
HpySE526I ACGT 1 cut(s) 707
Hsp92I GRCGYC 2 cut(s) 662, 707
Hsp92II CATG 2 cut(s) 160, 581
HspAI GCGC 2 cut(s) 373, 506
Kzo9I GATC 4 cut(s) 164, 248, 312, 618
LmnI GCTCC 2 cut(s) 124, 676
Lsp1109I GCAGC 5 cut(s) 87, 90, 99, 346, 569
LweI GCATC 1 cut(s) 280
MaeI CTAG 1 cut(s) 714
MaeII ACGT 1 cut(s) 707
MaeIII GTNAC 1 cut(s) 523
MalI GATC 4 cut(s) 166, 250, 314, 620
MbiI CCGCTC 1 cut(s) 532
MboI GATC 4 cut(s) 164, 248, 312, 618
MboII GAAGA 2 cut(s) 30, 620
MflI RGATCY 2 cut(s) 164, 248
MhlI GDGCHC 2 cut(s) 516, 681
MluCI AATT 2 cut(s) 433, 568
MlyI GAGTC 2 cut(s) 105, 164
MmeI TCCRAC 2 cut(s) 192, 462
MnlI CCTC 9 cut(s) 19, 68, 223, 226, 262, 398, 420, 595, 660
MspI CCGG 8 cut(s) 246, 354, 400, 450, 470, 503, 553, 558
MspR9I CCNGG 6 cut(s) 203, 451, 470, 503, 554, 559
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 2 cut(s) 275, 463
MwoI GCNNNNNNNGC 7 cut(s) 84, 87, 96, 340, 370, 563, 649
NciI CCSGG 5 cut(s) 451, 470, 503, 554, 559
NdeII GATC 4 cut(s) 164, 248, 312, 618
NlaIII CATG 2 cut(s) 160, 581
NlaIV GGNNCC 2 cut(s) 250, 678
NmeAIII GCCGAG 2 cut(s) 510, 690
NmuCI GTSAC 1 cut(s) 523
NspV TTCGAA 1 cut(s) 281
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 656
PctI GAATGC 1 cut(s) 489
PfeI GAWTC 2 cut(s) 394, 671
PflFI GACNNNGTC 1 cut(s) 706
PkrI GCNGC 8 cut(s) 77, 80, 89, 336, 377, 462, 531, 584
PleI GAGTC 2 cut(s) 105, 164
PpsI GAGTC 2 cut(s) 105, 164
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 250, 678
PspPI GGNCC 1 cut(s) 555
PsuI RGATCY 2 cut(s) 164, 248
PsyI GACNNNGTC 1 cut(s) 706
SatI GCNGC 8 cut(s) 76, 79, 88, 335, 376, 461, 530, 583
Sau3AI GATC 4 cut(s) 164, 248, 312, 618
Sau96I GGNCC 1 cut(s) 555
SchI GAGTC 2 cut(s) 105, 164
ScrFI CCNGG 6 cut(s) 203, 451, 470, 503, 554, 559
SduI GDGCHC 2 cut(s) 516, 681
SetI ASST 9 cut(s) 11, 121, 197, 215, 273, 366, 710, 721, 727
SfaNI GCATC 1 cut(s) 280
SfuI TTCGAA 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 2 cut(s) 433, 568
SsiI CCGC 6 cut(s) 138, 174, 308, 376, 461, 530
SspMI CTAG 1 cut(s) 714
StyD4I CCNGG 6 cut(s) 201, 449, 468, 501, 552, 557
TaaI ACNGT 1 cut(s) 591
TaiI ACGT 1 cut(s) 710
TaqI TCGA 2 cut(s) 281, 495
TasI AATT 2 cut(s) 433, 568
TauI GCSGC 3 cut(s) 378, 463, 532
TfiI GAWTC 2 cut(s) 394, 671
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 5 cut(s) 75, 78, 87, 334, 582
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 1 cut(s) 717
Tth111I GACNNNGTC 1 cut(s) 706
XapI RAATTY 1 cut(s) 568
XspI CTAG 1 cut(s) 714
ZraI GACGTC 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.