Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012106

Physical Location & Seq

Genomic Coordinates Reverse (-)

5272315 .. 5274295

Gene Structure 1981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAAATCTCTCCCAGAAGAGAGACCAATCCAAACCCAAACTCTCTGCCCTCCCCAAACAGCAGCACAAGCAGCACCAACAGCAACAACAACAACAACAACAACGTTAATGGACTCCAACTCCAAGCTCCCCCAACAACCCCAACTGCCCAACCCCCAAAACCCATGACCAGATCCGACCCCGCTAACCCTTACCCGACCACCTTCGTCCAGGCCGACACCAACTCCTTCAAGCAAGTCGTCCAAATGCTCACCGGTTCCTCCGAAACCGCCAACAAGGTCGCGTGTTCCAAACACAACATCCCGCCCATCAAGTCCACTCCCAAGAAACAGCAACAGCACCAACACCAACACAACAACAACTCCGGTTTCAAGCTCTACGAGCGCCGCAACAACGCCTTCAAAAACCAACTCCGCCTCAACCCCCTAACCCCAATCCCTGTCTTCAACTCCAATTCCAACGGCCACTCCGGTTTCTCGCCCCGAAACCCGGAGATTTTGTCCCCGAGCATTCTCGATTTCCCGGCACTGGTGCTCAGCCCCGTCACTCCTCTCATACCTGACCCGTTTGACCGGGCCGGGTCCGGGAGTCTCGGGCATGGTTGCTCTCAGTTGAACAAGGAGGCTGAAGAGAAAGCGATCAAGGAAAAAGGGTTTTACTTGCACCCGTCGCCGAGTACGACGCCGAGAGAATCGGAGCCTCGACTGCTGCCTTTGTTCCCAACGACGTCGCCTAGAGCTTCAGGAAACCATTTGGGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0010185 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0043433 GO:0044092 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051245 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

255

Amino Acids

27.7

Weight (kDa)

9.76

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	64 - 90	3.3e-11	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28280 AT1G28280
fragaria_vesca	FvH4_3g09030 FvH4_3g09030 FvH4_3g09030 FvH4_3g09030
malus_domestica	MD00G1116300.v1.1 MD10G1293000.v1.1
prunus_persica	Prupe.4G048900_v2.0.a1
pyrus_communis	pycom10g24500
rosa_chinensis	RchiOBHm_Chr5g0008641
rosa_laevigata	RLG00000031589
rosa_multiflora	Rmu_sc0001665.1_g000029
rosa_rugosa	Rorug04G0437600
rosa_samantha	Rh5AG066200 Rh5BG063500 Rh5CG073700 Rh5DG062700
rosa_wichuraiana	Rw5G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	731
AccII	CGCG	1 cut(s)	284
AciI	CCGC	5 cut(s)	183, 270, 305, 388, 415
AclI	AACGTT	1 cut(s)	105
AclWI	GGATC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	463
AcuI	CTGAAG	2 cut(s)	648, 726
AcyI	GRCGYC	2 cut(s)	683, 728
AfaI	GTAC	1 cut(s)	679
AfiI	CCNNNNNNNGG	3 cut(s)	490, 529, 585
AgeI	ACCGGT	1 cut(s)	254
AgsI	TTSAA	5 cut(s)	232, 373, 403, 448, 616
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	3 cut(s)	128, 376, 740
AluI	AGCT	3 cut(s)	128, 376, 740
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	2 cut(s)	17, 596
AlwI	GGATC	1 cut(s)	168
Ama87I	CYCGRG	2 cut(s)	505, 593
AoxI	GGCC	3 cut(s)	213, 463, 576
ApeKI	GCWGC	3 cut(s)	63, 72, 709
AsiGI	ACCGGT	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	2 cut(s)	576, 582
AsuC2I	CCSGG	5 cut(s)	491, 524, 575, 580, 586
AsuHPI	GGTGA	1 cut(s)	244
AvaI	CYCGRG	2 cut(s)	505, 593
AvaII	GGWCC	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	3 cut(s)	75, 84, 696
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	478
BciT130I	CCWGG	1 cut(s)	212
BcnI	CCSGG	5 cut(s)	491, 524, 575, 580, 586
BcoDI	GTCTC	2 cut(s)	17, 596
BfaI	CTAG	1 cut(s)	735
BfoI	RGCGCY	1 cut(s)	388
BisI	GCNGC	4 cut(s)	64, 73, 388, 710
BlpI	GCTNAGC	1 cut(s)	536
BlsI	GCNGC	4 cut(s)	65, 74, 389, 711
Bme1390I	CCNGG	6 cut(s)	212, 491, 524, 575, 580, 586
Bme18I	GGWCC	1 cut(s)	582
BmeT110I	CYCGRG	2 cut(s)	505, 593
BmgT120I	GGNCC	2 cut(s)	576, 582
BmiI	GGNNCC	3 cut(s)	259, 583, 699
BmrFI	CCNGG	6 cut(s)	212, 491, 524, 575, 580, 586
BpiI	GAAGAC	1 cut(s)	436
Bpu1102I	GCTNAGC	1 cut(s)	536
BpuMI	CCSGG	5 cut(s)	491, 524, 575, 580, 586
BsaHI	GRCGYC	2 cut(s)	683, 728
BsaI	GGTCTC	1 cut(s)	17
BsaWI	WCCGGW	3 cut(s)	254, 365, 470
Bsc4I	CCNNNNNNNGG	3 cut(s)	490, 529, 585
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	3 cut(s)	490, 529, 585
BseMII	CTCAG	2 cut(s)	550, 623
BseNI	ACTGG	1 cut(s)	534
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	3 cut(s)	75, 84, 696
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	3 cut(s)	215, 465, 578
BshTI	ACCGGT	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	537
BsiHKCI	CYCGRG	2 cut(s)	505, 593
BsiSI	CCGG	8 cut(s)	255, 366, 471, 491, 524, 574, 579, 585
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	3 cut(s)	490, 529, 585
BsmAI	GTCTC	2 cut(s)	17, 596
BsmFI	GGGAC	1 cut(s)	487
BsmI	GAATGC	1 cut(s)	510
BsnI	GGCC	3 cut(s)	215, 465, 578
Bso31I	GGTCTC	1 cut(s)	17
BsoBI	CYCGRG	2 cut(s)	505, 593
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	2 cut(s)	173, 639
Bsp1720I	GCTNAGC	1 cut(s)	536
BspACI	CCGC	5 cut(s)	183, 270, 305, 388, 415
BspANI	GGCC	3 cut(s)	215, 465, 578
BspCNI	CTCAG	2 cut(s)	549, 622
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	3 cut(s)	259, 583, 699
BspPI	GGATC	1 cut(s)	168
BspTNI	GGTCTC	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	534
BssAI	RCCGGY	1 cut(s)	254
BssMI	GATC	2 cut(s)	173, 639
BssNI	GRCGYC	2 cut(s)	683, 728
Bst2UI	CCWGG	1 cut(s)	212
Bst6I	CTCTTC	2 cut(s)	13, 624
BstACI	GRCGYC	2 cut(s)	683, 728
BstDEI	CTNAG	2 cut(s)	536, 609
BstF5I	GGATG	1 cut(s)	300
BstFNI	CGCG	1 cut(s)	284
BstH2I	RGCGCY	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	2 cut(s)	176, 642
BstMAI	GTCTC	2 cut(s)	17, 596
BstMBI	GATC	2 cut(s)	173, 639
BstMWI	GCNNNNNNNGC	6 cut(s)	69, 72, 81, 382, 670, 706
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	6 cut(s)	210, 489, 522, 573, 578, 584
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	3 cut(s)	75, 84, 696
BstV2I	GAAGAC	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	3 cut(s)	215, 465, 578
BtsCI	GGATG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	527
CfoI	GCGC	1 cut(s)	387
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	576, 582
CseI	GACGC	1 cut(s)	691
Csp6I	GTAC	1 cut(s)	678
CspAI	ACCGGT	1 cut(s)	254
CviAII	CATG	2 cut(s)	166, 599
CviJI	RGCY	9 cut(s)	128, 215, 376, 465, 540, 578, 626, 700, 740
CviKI_1	RGCY	9 cut(s)	128, 215, 376, 465, 540, 578, 626, 700, 740
CviQI	GTAC	1 cut(s)	678
DdeI	CTNAG	2 cut(s)	536, 609
DpnI	GATC	2 cut(s)	175, 641
DpnII	GATC	2 cut(s)	173, 639
EaeI	YGGCCR	1 cut(s)	463
Eam1104I	CTCTTC	2 cut(s)	13, 624
EarI	CTCTTC	2 cut(s)	13, 624
EciI	GGCGGA	1 cut(s)	404
Eco31I	GGTCTC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	582
Eco57I	CTGAAG	2 cut(s)	648, 726
Eco88I	CYCGRG	2 cut(s)	505, 593
EcoRII	CCWGG	1 cut(s)	210
FaeI	CATG	2 cut(s)	169, 602
FaiI	YATR	3 cut(s)	167, 557, 600
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	2 cut(s)	165, 598
FauI	CCCGC	2 cut(s)	190, 312
Fnu4HI	GCNGC	4 cut(s)	64, 73, 388, 710
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	4 cut(s)	64, 73, 388, 710
FspBI	CTAG	1 cut(s)	735
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	4 cut(s)	64, 73, 388, 710
HaeII	RGCGCY	1 cut(s)	388
HaeIII	GGCC	3 cut(s)	215, 465, 578
HapII	CCGG	8 cut(s)	255, 366, 471, 491, 524, 574, 579, 585
HgaI	GACGC	1 cut(s)	691
HhaI	GCGC	1 cut(s)	387
Hin1I	GRCGYC	2 cut(s)	683, 728
Hin1II	CATG	2 cut(s)	169, 602
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HinfI	GANTC	3 cut(s)	114, 589, 692
HpaII	CCGG	8 cut(s)	255, 366, 471, 491, 524, 574, 579, 585
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	3 cut(s)	178, 265, 697
Hpy188III	TCNNGA	2 cut(s)	515, 744
Hpy8I	GTNNAC	1 cut(s)	318
Hpy99I	CGWCG	4 cut(s)	673, 685, 730, 733
HpyAV	CCTTC	3 cut(s)	214, 238, 409
HpyCH4IV	ACGT	2 cut(s)	105, 728
HpyCH4V	TGCA	1 cut(s)	664
HpyF10VI	GCNNNNNNNGC	6 cut(s)	69, 72, 81, 382, 670, 706
HpyF3I	CTNAG	2 cut(s)	536, 609
HpySE526I	ACGT	2 cut(s)	105, 728
Hsp92I	GRCGYC	2 cut(s)	683, 728
Hsp92II	CATG	2 cut(s)	169, 602
HspAI	GCGC	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	173, 639
LmnI	GCTCC	2 cut(s)	133, 697
Lsp1109I	GCAGC	3 cut(s)	75, 84, 696
MaeI	CTAG	1 cut(s)	735
MaeII	ACGT	2 cut(s)	105, 728
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	2 cut(s)	175, 641
MboI	GATC	2 cut(s)	173, 639
MboII	GAAGA	3 cut(s)	30, 436, 641
MflI	RGATCY	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	1 cut(s)	454
MlyI	GAGTC	2 cut(s)	108, 598
MmeI	TCCRAC	3 cut(s)	142, 201, 483
MnlI	CCTC	6 cut(s)	61, 271, 428, 561, 616, 711
MseI	TTAA	1 cut(s)	108
MspI	CCGG	8 cut(s)	255, 366, 471, 491, 524, 574, 579, 585
MspR9I	CCNGG	6 cut(s)	212, 491, 524, 575, 580, 586
Mva1269I	GAATGC	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	6 cut(s)	69, 72, 81, 382, 670, 706
NciI	CCSGG	5 cut(s)	491, 524, 575, 580, 586
NdeII	GATC	2 cut(s)	173, 639
NlaIII	CATG	2 cut(s)	169, 602
NlaIV	GGNNCC	3 cut(s)	259, 583, 699
NmeAIII	GCCGAG	2 cut(s)	699, 711
NmuCI	GTSAC	1 cut(s)	544
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 677
PctI	GAATGC	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	692
PfoI	TCCNGGA	1 cut(s)	584
PinAI	ACCGGT	1 cut(s)	254
PkrI	GCNGC	4 cut(s)	65, 74, 389, 711
PleI	GAGTC	2 cut(s)	108, 597
PpsI	GAGTC	2 cut(s)	108, 597
Psp1406I	AACGTT	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	3 cut(s)	259, 583, 699
PspPI	GGNCC	2 cut(s)	576, 582
PsuI	RGATCY	1 cut(s)	173
RsaI	GTAC	1 cut(s)	679
RsaNI	GTAC	1 cut(s)	678
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	4 cut(s)	64, 73, 388, 710
Sau3AI	GATC	2 cut(s)	173, 639
Sau96I	GGNCC	2 cut(s)	576, 582
SchI	GAGTC	2 cut(s)	108, 598
ScrFI	CCNGG	6 cut(s)	212, 491, 524, 575, 580, 586
SduI	GDGCHC	1 cut(s)	537
SetI	ASST	8 cut(s)	108, 130, 206, 282, 378, 562, 731, 742
SinI	GGWCC	1 cut(s)	582
Sse9I	AATT	1 cut(s)	454
SsiI	CCGC	5 cut(s)	183, 270, 305, 388, 415
SspMI	CTAG	1 cut(s)	735
StyD4I	CCNGG	6 cut(s)	210, 489, 522, 573, 578, 584
TaiI	ACGT	2 cut(s)	108, 731
TaqI	TCGA	2 cut(s)	516, 703
TasI	AATT	1 cut(s)	454
TauI	GCSGC	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	692
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	3 cut(s)	63, 72, 709
Tsp45I	GTSAC	1 cut(s)	544
TspRI	CASTG	1 cut(s)	534
VpaK11BI	GGWCC	1 cut(s)	582
XspI	CTAG	1 cut(s)	735
ZraI	GACGTC	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.