Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012106

Physical Location & Seq

Genomic Coordinates Forward (+)

2336709 .. 2337451

Gene Structure 743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G048900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAAACCTCGCCAAGACGCCAACAAGAGAACCCAAACCCTTCTCTGCTTCCTTCTCCAAACAGCAACAGCTCCAACAGCAGCACAAGTAGCACCCACAGCACACATGGGACTTCAGCTCCACCAACAACTCAACTCCCCAACCCCCAAAACCCATCACCAGATCCGAATCCGCCAACCCCCGACACCAACTCCTTCAAACAAGTCGTCCAAATGCTAACCGGATCCTCCGAAACCGCCAAGCAGGCCTCTTCAAAACCCGCCAACACCTGCCCAGACCCGCATAACAAAACCCACATACCACCCATCAAATCTACGCCCAAAAAGCAACAATCCGGGTTCAAGCTCTACGAGCGCCGAAACTCACTCAAGAACCTCAGAATTAACCCCCTAATCCCCGTCTTCAGTTCCAACGCCTCCGGCTTCTCTCCCCGAAACCCTGAGATTTTATCTCCGAGCATTCTCGATTTCCCGGCTTTAGTTCTCAGCCCGGTCACGCCGCTCATACCCGACCCGTTTGACAGGTCCGGGTCGGCCAATTACTGGTCGAATCCCAATGGGTGTGCCCATTTAAACAAGGAGGCTGAAGAGAAAGCCATTAAAGAAAAGGGTTTTTACTTGCACCCGTCACCGAGCACGACCCCGAGGGAATCGGAGCCCCGACTGTTGCCTTTGTTCCCTACGACGTCGCCTAGAGCTTCAGGTTCATCTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0010185 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0043433 GO:0044092 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051245 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

240

Amino Acids

25.8

Weight (kDa)

9.45

Isoelectric Point (pI)

66.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28280 AT1G28280
fragaria_vesca	FvH4_3g09030 FvH4_3g09030 FvH4_3g09030 FvH4_3g09030
malus_domestica	MD00G1116300.v1.1 MD10G1293000.v1.1
prunus_persica	Prupe.4G048900_v2.0.a1
pyrus_communis	pycom10g24500
rosa_chinensis	RchiOBHm_Chr5g0008641
rosa_laevigata	RLG00000031589
rosa_multiflora	Rmu_sc0001665.1_g000029
rosa_rugosa	Rorug04G0437600
rosa_samantha	Rh5AG066200 Rh5BG063500 Rh5CG073700 Rh5DG062700
rosa_wichuraiana	Rw5G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	278
AatII	GACGTC	1 cut(s)	689
Acc36I	ACCTGC	1 cut(s)	278
AccB7I	CCANNNNNTGG	1 cut(s)	543
AccBSI	CCGCTC	1 cut(s)	502
AciI	CCGC	5 cut(s)	173, 237, 261, 281, 500
AclWI	GGATC	3 cut(s)	158, 219, 232
AcoI	YGGCCR	1 cut(s)	534
AcuI	CTGAAG	4 cut(s)	99, 388, 606, 684
AcyI	GRCGYC	2 cut(s)	19, 686
AfiI	CCNNNNNNNGG	1 cut(s)	543
AgsI	TTSAA	3 cut(s)	199, 255, 343
AluBI	AGCT	4 cut(s)	72, 119, 346, 698
AluI	AGCT	4 cut(s)	72, 119, 346, 698
Alw21I	GWGCWC	1 cut(s)	638
AlwI	GGATC	3 cut(s)	158, 219, 232
Ama87I	CYCGRG	1 cut(s)	643
AoxI	GGCC	2 cut(s)	246, 534
ApeKI	GCWGC	1 cut(s)	81
ArsI	GACNNNNNNTTYG	2 cut(s)	192, 224
AspLEI	GCGC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	525
AsuC2I	CCSGG	4 cut(s)	337, 473, 491, 529
AsuHPI	GGTGA	2 cut(s)	150, 621
AvaI	CYCGRG	1 cut(s)	643
AvaII	GGWCC	1 cut(s)	525
BaeGI	GKGCMC	1 cut(s)	568
BamHI	GGATCC	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	638
BbvI	GCAGC	1 cut(s)	93
BccI	CCATC	2 cut(s)	163, 314
BcnI	CCSGG	4 cut(s)	337, 473, 491, 529
BfaI	CTAG	1 cut(s)	693
BfoI	RGCGCY	1 cut(s)	358
BfuAI	ACCTGC	1 cut(s)	278
BglI	GCCNNNNNGGC	1 cut(s)	245
BisI	GCNGC	2 cut(s)	82, 500
BlsI	GCNGC	2 cut(s)	83, 501
Bme1390I	CCNGG	4 cut(s)	337, 473, 491, 529
Bme18I	GGWCC	1 cut(s)	525
BmeT110I	CYCGRG	1 cut(s)	643
BmgT120I	GGNCC	1 cut(s)	525
BmiI	GGNNCC	2 cut(s)	226, 657
BmrFI	CCNGG	4 cut(s)	337, 473, 491, 529
BpiI	GAAGAC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	4 cut(s)	337, 473, 491, 529
BsaBI	GATNNNNATC	1 cut(s)	168
BsaHI	GRCGYC	2 cut(s)	19, 686
BsaJI	CCNNGG	1 cut(s)	644
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	4 cut(s)	103, 133, 176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse1I	ACTGG	1 cut(s)	548
Bse8I	GATNNNNATC	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	644
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMII	CTCAG	3 cut(s)	391, 432, 499
BseNI	ACTGG	1 cut(s)	548
BseSI	GKGCMC	1 cut(s)	568
BseXI	GCAGC	1 cut(s)	93
BshFI	GGCC	2 cut(s)	248, 536
BsiHKAI	GWGCWC	1 cut(s)	638
BsiHKCI	CYCGRG	1 cut(s)	643
BsiSI	CCGG	6 cut(s)	222, 336, 420, 473, 491, 528
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmFI	GGGAC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	459
BsnI	GGCC	2 cut(s)	248, 536
BsoBI	CYCGRG	1 cut(s)	643
Bsp1286I	GDGCHC	3 cut(s)	568, 638, 660
Bsp143I	GATC	2 cut(s)	163, 224
BspACI	CCGC	5 cut(s)	173, 237, 261, 281, 500
BspANI	GGCC	2 cut(s)	248, 536
BspCNI	CTCAG	3 cut(s)	390, 433, 498
BspLI	GGNNCC	2 cut(s)	226, 657
BspMI	ACCTGC	1 cut(s)	278
BspPI	GGATC	3 cut(s)	158, 219, 232
BsrBI	CCGCTC	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	548
BssECI	CCNNGG	1 cut(s)	644
BssMI	GATC	2 cut(s)	163, 224
BssNI	GRCGYC	2 cut(s)	19, 686
Bst4CI	ACNGT	1 cut(s)	666
Bst6I	CTCTTC	2 cut(s)	256, 582
BstACI	GRCGYC	2 cut(s)	19, 686
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	3 cut(s)	377, 441, 485
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	2 cut(s)	166, 227
BstMBI	GATC	2 cut(s)	163, 224
BstMWI	GCNNNNNNNGC	6 cut(s)	78, 90, 99, 245, 325, 352
BstSCI	CCNGG	4 cut(s)	335, 471, 489, 527
BstSLI	GKGCMC	1 cut(s)	568
BstV1I	GCAGC	1 cut(s)	93
BstV2I	GAAGAC	1 cut(s)	394
BstX2I	RGATCY	2 cut(s)	163, 224
BstYI	RGATCY	2 cut(s)	163, 224
BsuRI	GGCC	2 cut(s)	248, 536
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	246
CfoI	GCGC	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	525
CseI	GACGC	1 cut(s)	27
CviAII	CATG	1 cut(s)	107
DdeI	CTNAG	3 cut(s)	377, 441, 485
DpnI	GATC	2 cut(s)	165, 226
DpnII	GATC	2 cut(s)	163, 224
DraI	TTTAAA	1 cut(s)	573
EaeI	YGGCCR	1 cut(s)	534
Eam1104I	CTCTTC	2 cut(s)	256, 582
EarI	CTCTTC	2 cut(s)	256, 582
EciI	GGCGGA	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	660
Eco47I	GGWCC	1 cut(s)	525
Eco57I	CTGAAG	4 cut(s)	99, 388, 606, 684
Eco88I	CYCGRG	1 cut(s)	643
EcoT38I	GRGCYC	1 cut(s)	660
FaeI	CATG	1 cut(s)	110
FaiI	YATR	4 cut(s)	108, 285, 299, 506
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	1 cut(s)	106
FauI	CCCGC	2 cut(s)	268, 288
Fnu4HI	GCNGC	2 cut(s)	82, 500
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	2 cut(s)	82, 500
FspBI	CTAG	1 cut(s)	693
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	2 cut(s)	82, 500
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	2 cut(s)	248, 536
HapII	CCGG	6 cut(s)	222, 336, 420, 473, 491, 528
HgaI	GACGC	1 cut(s)	27
HhaI	GCGC	1 cut(s)	357
Hin1I	GRCGYC	2 cut(s)	19, 686
Hin1II	CATG	1 cut(s)	110
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HinfI	GANTC	3 cut(s)	169, 550, 650
HpaII	CCGG	6 cut(s)	222, 336, 420, 473, 491, 528
HphI	GGTGA	2 cut(s)	150, 621
Hpy188I	TCNGA	5 cut(s)	168, 232, 380, 456, 655
Hpy188III	TCNNGA	3 cut(s)	370, 464, 717
Hpy99I	CGWCG	2 cut(s)	688, 691
HpyAV	CCTTC	3 cut(s)	51, 63, 205
HpyCH4III	ACNGT	1 cut(s)	666
HpyCH4IV	ACGT	1 cut(s)	686
HpyCH4V	TGCA	1 cut(s)	622
HpyF10VI	GCNNNNNNNGC	6 cut(s)	78, 90, 99, 245, 325, 352
HpyF3I	CTNAG	3 cut(s)	377, 441, 485
HpySE526I	ACGT	1 cut(s)	686
Hsp92I	GRCGYC	2 cut(s)	19, 686
Hsp92II	CATG	1 cut(s)	110
HspAI	GCGC	1 cut(s)	355
Kzo9I	GATC	2 cut(s)	163, 224
LmnI	GCTCC	3 cut(s)	77, 124, 655
Lsp1109I	GCAGC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	1 cut(s)	686
MaeIII	GTNAC	2 cut(s)	493, 627
MalI	GATC	2 cut(s)	165, 226
MbiI	CCGCTC	1 cut(s)	502
MboI	GATC	2 cut(s)	163, 224
MboII	GAAGA	5 cut(s)	243, 394, 599, 702, 705
MflI	RGATCY	2 cut(s)	163, 224
MhlI	GDGCHC	3 cut(s)	568, 638, 660
MluCI	AATT	2 cut(s)	381, 538
MmeI	TCCRAC	2 cut(s)	99, 435
MnlI	CCTC	7 cut(s)	19, 238, 259, 386, 427, 574, 639
MseI	TTAA	3 cut(s)	384, 572, 600
MspI	CCGG	6 cut(s)	222, 336, 420, 473, 491, 528
MspR9I	CCNGG	4 cut(s)	337, 473, 491, 529
Mva1269I	GAATGC	1 cut(s)	459
MwoI	GCNNNNNNNGC	6 cut(s)	78, 90, 99, 245, 325, 352
NciI	CCSGG	4 cut(s)	337, 473, 491, 529
NdeII	GATC	2 cut(s)	163, 224
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	2 cut(s)	226, 657
NmuCI	GTSAC	2 cut(s)	493, 627
PaqCI	CACCTGC	1 cut(s)	278
PceI	AGGCCT	1 cut(s)	248
PctI	GAATGC	1 cut(s)	459
PfeI	GAWTC	3 cut(s)	169, 550, 650
PflMI	CCANNNNNTGG	1 cut(s)	543
PkrI	GCNGC	2 cut(s)	83, 501
PspN4I	GGNNCC	2 cut(s)	226, 657
PspPI	GGNCC	1 cut(s)	525
PsuI	RGATCY	2 cut(s)	163, 224
SaqAI	TTAA	3 cut(s)	384, 572, 600
SatI	GCNGC	2 cut(s)	82, 500
Sau3AI	GATC	2 cut(s)	163, 224
Sau96I	GGNCC	1 cut(s)	525
ScrFI	CCNGG	4 cut(s)	337, 473, 491, 529
SduI	GDGCHC	3 cut(s)	568, 638, 660
SinI	GGWCC	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	381, 538
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	5 cut(s)	173, 237, 261, 281, 500
SspMI	CTAG	1 cut(s)	693
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	4 cut(s)	335, 471, 489, 527
TaaI	ACNGT	1 cut(s)	666
TaiI	ACGT	1 cut(s)	689
TaqI	TCGA	2 cut(s)	465, 548
TasI	AATT	2 cut(s)	381, 538
TauI	GCSGC	1 cut(s)	502
TfiI	GAWTC	3 cut(s)	169, 550, 650
Tru1I	TTAA	3 cut(s)	384, 572, 600
Tru9I	TTAA	3 cut(s)	384, 572, 600
TseFI	GTSAC	2 cut(s)	493, 627
TseI	GCWGC	1 cut(s)	81
Tsp45I	GTSAC	2 cut(s)	493, 627
TspDTI	ATGAA	1 cut(s)	696
Van91I	CCANNNNNTGG	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	525
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XspI	CTAG	1 cut(s)	693
ZraI	GACGTC	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.