RchiOBHm_Chr5g0008641

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012106
Physical Location & Seq
Forward (+)
5593966 .. 5595480
1515 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28959

Sequence Viewer

Length: 747 bp
ATGGAAACCTCTCCCAGAAGAGAGACTAACCCTAACCCTAACCCTAACCTAAACGCTCTCCCATCCCCAAACAGCAGCAGCACAAGCAGCACCAACAGCAACAACAATGGACTCCAAGCTCCCCCAACAACCCCAACCGCCCAACCCCCGAAACCCATGACCAGATCCGACTCCGCTAACCCTTACCCGACCACCTTCGTCCAGGCCGACACCACATCTTTCAAACAAGTCGTCCAAATGCTGACCGGATCCTCCGAAACAGCCAACAAGGTCGCGTGTTCGAAACACGATGCCAGACACAACATCCCGCCGATCAAGTCCACCCCCAAGAAGCAGCAACAGCAACAGAACTCCGGTTTCAAGCTCTACGAGCGCCGCAACAACGCCCTGAAGAATCTCCGGCTCAACCCTCTTATCCCAATCCCGGTGTTCAATTCCAACAACAACAACAACTCCGGGTTCTCGCCGCGAAACCCGGAGATTTTGTCGCCGAGCATTCTCGATTTCCCGGCGCTGGTGCTCAGCCCCGTCACGCCGCTCATACCCGACCCGTTTGACCGGGCCGGGTCGGCGAATTTCGGGCACGGCTGCTCACAGTTGAACAAGGAGGCCGAAGAGAAAGCGATCAAAGAAAAAGGGTTTTACTTGCACCCGTCGCCGACTACGACGCCGAGGGAATCGGAGCCCCGATTGTTGCCCTTGTTCCCGACGACGTCGCCTAGAGCTTCAGGTTCATCTTCTTCTTGA

Protein Analysis

248

Amino Acids

26.91

Weight (kDa)

9.69

Isoelectric Point (pI)

60.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 61 - 87 8.3e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28280 AT1G28280
fragaria_vesca FvH4_3g09030 FvH4_3g09030 FvH4_3g09030 FvH4_3g09030
malus_domestica MD00G1116300.v1.1 MD10G1293000.v1.1
prunus_persica Prupe.4G048900_v2.0.a1
pyrus_communis pycom10g24500
rosa_chinensis RchiOBHm_Chr5g0008641
rosa_laevigata RLG00000031589
rosa_multiflora Rmu_sc0001665.1_g000029
rosa_rugosa Rorug04G0437600
rosa_samantha Rh5AG066200 Rh5BG063500 Rh5CG073700 Rh5DG062700
rosa_wichuraiana Rw5G006280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 716
AccBSI CCGCTC 1 cut(s) 538
AccII CGCG 2 cut(s) 275, 469
AciI CCGC 6 cut(s) 138, 174, 308, 376, 467, 536
AclWI GGATC 3 cut(s) 159, 243, 256
AcsI RAATTY 1 cut(s) 574
AcuI CTGAAG 2 cut(s) 410, 711
AcyI GRCGYC 2 cut(s) 668, 713
AfiI CCNNNNNNNGG 2 cut(s) 424, 514
AgsI TTSAA 4 cut(s) 223, 361, 433, 601
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 3 cut(s) 119, 364, 725
AluI AGCT 3 cut(s) 119, 364, 725
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 3 cut(s) 159, 243, 256
AoxI GGCC 3 cut(s) 204, 561, 609
ApeKI GCWGC 5 cut(s) 75, 78, 87, 334, 588
ApoI RAATTY 1 cut(s) 574
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
AspLEI GCGC 2 cut(s) 375, 514
AspS9I GGNCC 1 cut(s) 561
AsuC2I CCSGG 6 cut(s) 425, 457, 476, 509, 560, 565
AsuII TTCGAA 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 585
BamHI GGATCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 687
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 5 cut(s) 87, 90, 99, 346, 575
BccI CCATC 1 cut(s) 70
BceAI ACGGC 1 cut(s) 601
BciT130I CCWGG 1 cut(s) 203
BcnI CCSGG 6 cut(s) 425, 457, 476, 509, 560, 565
BcoDI GTCTC 1 cut(s) 17
BfaI CTAG 1 cut(s) 720
BfoI RGCGCY 2 cut(s) 376, 515
BglI GCCNNNNNGGC 1 cut(s) 569
BisI GCNGC 8 cut(s) 76, 79, 88, 335, 376, 467, 536, 589
BlpI GCTNAGC 1 cut(s) 521
BlsI GCNGC 8 cut(s) 77, 80, 89, 336, 377, 468, 537, 590
Bme1390I CCNGG 7 cut(s) 203, 425, 457, 476, 509, 560, 565
BmgT120I GGNCC 1 cut(s) 561
BmiI GGNNCC 2 cut(s) 250, 684
BmrFI CCNGG 7 cut(s) 203, 425, 457, 476, 509, 560, 565
BmsI GCATC 1 cut(s) 280
Bpu1102I GCTNAGC 1 cut(s) 521
Bpu14I TTCGAA 1 cut(s) 281
BpuMI CCSGG 6 cut(s) 425, 457, 476, 509, 560, 565
BsaHI GRCGYC 2 cut(s) 668, 713
BsaJI CCNNGG 1 cut(s) 671
BsaWI WCCGGW 2 cut(s) 245, 353
BsaXI ACNNNNNCTCC 4 cut(s) 437, 467, 470, 500
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 514
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 671
BseGI GGATG 2 cut(s) 62, 303
BseLI CCNNNNNNNGG 2 cut(s) 424, 514
BseMII CTCAG 1 cut(s) 535
BseSI GKGCMC 1 cut(s) 585
BseXI GCAGC 5 cut(s) 87, 90, 99, 346, 575
Bsh1236I CGCG 2 cut(s) 275, 469
BshFI GGCC 3 cut(s) 206, 563, 611
BsiHKAI GWGCWC 1 cut(s) 522
BsiSI CCGG 9 cut(s) 246, 354, 400, 425, 456, 476, 509, 559, 564
BslI CCNNNNNNNGG 2 cut(s) 424, 514
BsmAI GTCTC 1 cut(s) 17
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 3 cut(s) 206, 563, 611
Bsp119I TTCGAA 1 cut(s) 281
Bsp1286I GDGCHC 3 cut(s) 522, 585, 687
Bsp143I GATC 4 cut(s) 164, 248, 312, 624
Bsp1720I GCTNAGC 1 cut(s) 521
BspACI CCGC 6 cut(s) 138, 174, 308, 376, 467, 536
BspANI GGCC 3 cut(s) 206, 563, 611
BspCNI CTCAG 1 cut(s) 534
BspFNI CGCG 2 cut(s) 275, 469
BspLI GGNNCC 2 cut(s) 250, 684
BspPI GGATC 3 cut(s) 159, 243, 256
BspT104I TTCGAA 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 538
BssECI CCNNGG 1 cut(s) 671
BssMI GATC 4 cut(s) 164, 248, 312, 624
BssNI GRCGYC 2 cut(s) 668, 713
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 597
Bst6I CTCTTC 2 cut(s) 13, 609
BstACI GRCGYC 2 cut(s) 668, 713
BstBI TTCGAA 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 521
BstF5I GGATG 2 cut(s) 62, 303
BstFNI CGCG 2 cut(s) 275, 469
BstH2I RGCGCY 2 cut(s) 376, 515
BstHHI GCGC 2 cut(s) 375, 514
BstKTI GATC 4 cut(s) 167, 251, 315, 627
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 4 cut(s) 164, 248, 312, 624
BstMWI GCNNNNNNNGC 7 cut(s) 84, 87, 96, 340, 370, 569, 655
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 7 cut(s) 201, 423, 455, 474, 507, 558, 563
BstSLI GKGCMC 1 cut(s) 585
BstUI CGCG 2 cut(s) 275, 469
BstV1I GCAGC 5 cut(s) 87, 90, 99, 346, 575
BstX2I RGATCY 2 cut(s) 164, 248
BstYI RGATCY 2 cut(s) 164, 248
BsuRI GGCC 3 cut(s) 206, 563, 611
BtsCI GGATG 2 cut(s) 62, 303
CfoI GCGC 2 cut(s) 375, 514
Cfr13I GGNCC 1 cut(s) 561
CseI GACGC 1 cut(s) 676
CviAII CATG 1 cut(s) 157
DdeI CTNAG 1 cut(s) 521
DpnI GATC 4 cut(s) 166, 250, 314, 626
DpnII GATC 4 cut(s) 164, 248, 312, 624
Eam1104I CTCTTC 2 cut(s) 13, 609
EarI CTCTTC 2 cut(s) 13, 609
Eco24I GRGCYC 1 cut(s) 687
Eco57I CTGAAG 2 cut(s) 410, 711
EcoRII CCWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 687
FaeI CATG 1 cut(s) 160
FaiI YATR 2 cut(s) 158, 542
FatI CATG 1 cut(s) 156
FauI CCCGC 1 cut(s) 315
Fnu4HI GCNGC 8 cut(s) 76, 79, 88, 335, 376, 467, 536, 589
FokI GGATG 2 cut(s) 49, 290
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 8 cut(s) 76, 79, 88, 335, 376, 467, 536, 589
FspBI CTAG 1 cut(s) 720
GlaI GCGC 2 cut(s) 374, 513
GluI GCNGC 8 cut(s) 76, 79, 88, 335, 376, 467, 536, 589
HaeII RGCGCY 2 cut(s) 376, 515
HaeIII GGCC 3 cut(s) 206, 563, 611
HapII CCGG 9 cut(s) 246, 354, 400, 425, 456, 476, 509, 559, 564
HgaI GACGC 1 cut(s) 676
HhaI GCGC 2 cut(s) 375, 514
Hin1I GRCGYC 2 cut(s) 668, 713
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 2 cut(s) 373, 512
HinP1I GCGC 2 cut(s) 373, 512
HinfI GANTC 4 cut(s) 111, 170, 394, 677
HpaII CCGG 9 cut(s) 246, 354, 400, 425, 456, 476, 509, 559, 564
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 3 cut(s) 169, 256, 682
Hpy188III TCNNGA 3 cut(s) 500, 706, 744
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 5 cut(s) 658, 670, 712, 715, 718
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 597
HpyCH4IV ACGT 1 cut(s) 713
HpyCH4V TGCA 1 cut(s) 649
HpyF10VI GCNNNNNNNGC 7 cut(s) 84, 87, 96, 340, 370, 569, 655
HpyF3I CTNAG 1 cut(s) 521
HpySE526I ACGT 1 cut(s) 713
Hsp92I GRCGYC 2 cut(s) 668, 713
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 2 cut(s) 373, 512
Kzo9I GATC 4 cut(s) 164, 248, 312, 624
LmnI GCTCC 2 cut(s) 124, 682
Lsp1109I GCAGC 5 cut(s) 87, 90, 99, 346, 575
LweI GCATC 1 cut(s) 280
MaeI CTAG 1 cut(s) 720
MaeII ACGT 1 cut(s) 713
MaeIII GTNAC 1 cut(s) 529
MalI GATC 4 cut(s) 166, 250, 314, 626
MbiI CCGCTC 1 cut(s) 538
MboI GATC 4 cut(s) 164, 248, 312, 624
MboII GAAGA 5 cut(s) 30, 403, 626, 729, 732
MflI RGATCY 2 cut(s) 164, 248
MhlI GDGCHC 3 cut(s) 522, 585, 687
MluCI AATT 2 cut(s) 433, 574
MlyI GAGTC 2 cut(s) 105, 164
MmeI TCCRAC 2 cut(s) 192, 462
MnlI CCTC 5 cut(s) 19, 262, 420, 601, 666
MspI CCGG 9 cut(s) 246, 354, 400, 425, 456, 476, 509, 559, 564
MspR9I CCNGG 7 cut(s) 203, 425, 457, 476, 509, 560, 565
Mva1269I GAATGC 1 cut(s) 495
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 2 cut(s) 275, 469
MwoI GCNNNNNNNGC 7 cut(s) 84, 87, 96, 340, 370, 569, 655
NciI CCSGG 6 cut(s) 425, 457, 476, 509, 560, 565
NdeII GATC 4 cut(s) 164, 248, 312, 624
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 2 cut(s) 250, 684
NmeAIII GCCGAG 2 cut(s) 516, 696
NmuCI GTSAC 1 cut(s) 529
NspV TTCGAA 1 cut(s) 281
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 662
PctI GAATGC 1 cut(s) 495
PfeI GAWTC 2 cut(s) 394, 677
PflFI GACNNNGTC 1 cut(s) 712
PkrI GCNGC 8 cut(s) 77, 80, 89, 336, 377, 468, 537, 590
PleI GAGTC 2 cut(s) 105, 164
PpsI GAGTC 2 cut(s) 105, 164
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 250, 684
PspPI GGNCC 1 cut(s) 561
PsuI RGATCY 2 cut(s) 164, 248
PsyI GACNNNGTC 1 cut(s) 712
SatI GCNGC 8 cut(s) 76, 79, 88, 335, 376, 467, 536, 589
Sau3AI GATC 4 cut(s) 164, 248, 312, 624
Sau96I GGNCC 1 cut(s) 561
SchI GAGTC 2 cut(s) 105, 164
ScrFI CCNGG 7 cut(s) 203, 425, 457, 476, 509, 560, 565
SduI GDGCHC 3 cut(s) 522, 585, 687
SetI ASST 9 cut(s) 11, 51, 121, 197, 273, 366, 716, 727, 733
SfaNI GCATC 1 cut(s) 280
SfuI TTCGAA 1 cut(s) 281
Sse9I AATT 2 cut(s) 433, 574
SsiI CCGC 6 cut(s) 138, 174, 308, 376, 467, 536
SspMI CTAG 1 cut(s) 720
StyD4I CCNGG 7 cut(s) 201, 423, 455, 474, 507, 558, 563
TaaI ACNGT 1 cut(s) 597
TaiI ACGT 1 cut(s) 716
TaqI TCGA 2 cut(s) 281, 501
TasI AATT 2 cut(s) 433, 574
TauI GCSGC 3 cut(s) 378, 469, 538
TfiI GAWTC 2 cut(s) 394, 677
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 5 cut(s) 75, 78, 87, 334, 588
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 1 cut(s) 723
Tth111I GACNNNGTC 1 cut(s) 712
XapI RAATTY 1 cut(s) 574
XspI CTAG 1 cut(s) 720
ZraI GACGTC 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.