Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001665.1

Orthogroup ID

OG0012106

Physical Location & Seq

Genomic Coordinates Forward (+)

140487 .. 141221

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001665.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggaaacctctcccagaagagagactaaccctaacccaaacgctctcccatccccaaacagcagcagcacaagcagcaccaacagcaacaacaatggactccaagctcccccaacaaccccaaccgcccaacccccgaaacccatgaccagatccgactccgctaacccttacccgaccaccttcgtccaggccgacaccacatctttcaaacaagtcgtccaaatgttgaccggatcctccgaaacagccaacaaggtcgcgtgttcgaaacacgatgccagacacaacatcccgccgatcaagtccacccccaagaagcagcaacagcaacagaactccggtttcaagctctacgagcgccgcaacaacgccctgaagaatctccggctcaaccctcttatcccaatcccggtgttcaattccaacaacaacaacaactccgggttctcgccgcgaaacccggagattttgtcgccgagcattctcgatttcccggcgctggtgctcagccccgtcacgccgctcatacccgacccgtttgaccgggccgggtcggcgaatttcgggcacggctgctcacagttgaacaaggaggccgaagagaaagcgatcaaagaaaaagggttttacttgcatccgtcgccgactacgacgccgagggaatcggagccccgattgttgcccttgttcccgacgacgtcgcctagagcttcaggttcatcttcttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0010185 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0043433 GO:0044092 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051245 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

244

Amino Acids

26.47

Weight (kDa)

9.69

Isoelectric Point (pI)

61.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28280 AT1G28280
fragaria_vesca	FvH4_3g09030 FvH4_3g09030 FvH4_3g09030 FvH4_3g09030
malus_domestica	MD00G1116300.v1.1 MD10G1293000.v1.1
prunus_persica	Prupe.4G048900_v2.0.a1
pyrus_communis	pycom10g24500
rosa_chinensis	RchiOBHm_Chr5g0008641
rosa_laevigata	RLG00000031589
rosa_multiflora	Rmu_sc0001665.1_g000029
rosa_rugosa	Rorug04G0437600
rosa_samantha	Rh5AG066200 Rh5BG063500 Rh5CG073700 Rh5DG062700
rosa_wichuraiana	Rw5G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	704
AccBSI	CCGCTC	1 cut(s)	526
AccII	CGCG	2 cut(s)	263, 457
AciI	CCGC	6 cut(s)	126, 162, 296, 364, 455, 524
AclWI	GGATC	3 cut(s)	147, 231, 244
AcsI	RAATTY	1 cut(s)	562
AcuI	CTGAAG	2 cut(s)	398, 699
AcyI	GRCGYC	2 cut(s)	656, 701
AfiI	CCNNNNNNNGG	2 cut(s)	412, 502
AgsI	TTSAA	4 cut(s)	211, 349, 421, 589
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	3 cut(s)	107, 352, 713
AluI	AGCT	3 cut(s)	107, 352, 713
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	3 cut(s)	147, 231, 244
AoxI	GGCC	3 cut(s)	192, 549, 597
ApeKI	GCWGC	5 cut(s)	63, 66, 75, 322, 576
ApoI	RAATTY	1 cut(s)	562
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
AspLEI	GCGC	2 cut(s)	363, 502
AspS9I	GGNCC	1 cut(s)	549
AsuC2I	CCSGG	6 cut(s)	413, 445, 464, 497, 548, 553
AsuII	TTCGAA	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	573
BamHI	GGATCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	675
Bbv12I	GWGCWC	1 cut(s)	510
BbvI	GCAGC	5 cut(s)	75, 78, 87, 334, 563
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	589
BciT130I	CCWGG	1 cut(s)	191
BcnI	CCSGG	6 cut(s)	413, 445, 464, 497, 548, 553
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	1 cut(s)	708
BfoI	RGCGCY	2 cut(s)	364, 503
BglI	GCCNNNNNGGC	1 cut(s)	557
BisI	GCNGC	8 cut(s)	64, 67, 76, 323, 364, 455, 524, 577
BlpI	GCTNAGC	1 cut(s)	509
BlsI	GCNGC	8 cut(s)	65, 68, 77, 324, 365, 456, 525, 578
Bme1390I	CCNGG	7 cut(s)	191, 413, 445, 464, 497, 548, 553
BmgT120I	GGNCC	1 cut(s)	549
BmiI	GGNNCC	2 cut(s)	238, 672
BmrFI	CCNGG	7 cut(s)	191, 413, 445, 464, 497, 548, 553
BmsI	GCATC	2 cut(s)	268, 646
Bpu1102I	GCTNAGC	1 cut(s)	509
Bpu14I	TTCGAA	1 cut(s)	269
BpuMI	CCSGG	6 cut(s)	413, 445, 464, 497, 548, 553
BsaHI	GRCGYC	2 cut(s)	656, 701
BsaJI	CCNNGG	1 cut(s)	659
BsaWI	WCCGGW	2 cut(s)	233, 341
BsaXI	ACNNNNNCTCC	4 cut(s)	425, 455, 458, 488
Bsc4I	CCNNNNNNNGG	2 cut(s)	412, 502
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	659
BseGI	GGATG	3 cut(s)	50, 291, 637
BseLI	CCNNNNNNNGG	2 cut(s)	412, 502
BseMII	CTCAG	1 cut(s)	523
BseSI	GKGCMC	1 cut(s)	573
BseXI	GCAGC	5 cut(s)	75, 78, 87, 334, 563
Bsh1236I	CGCG	2 cut(s)	263, 457
BshFI	GGCC	3 cut(s)	194, 551, 599
BsiHKAI	GWGCWC	1 cut(s)	510
BsiSI	CCGG	9 cut(s)	234, 342, 388, 413, 444, 464, 497, 547, 552
BslI	CCNNNNNNNGG	2 cut(s)	412, 502
BsmAI	GTCTC	1 cut(s)	17
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	3 cut(s)	194, 551, 599
Bsp119I	TTCGAA	1 cut(s)	269
Bsp1286I	GDGCHC	3 cut(s)	510, 573, 675
Bsp143I	GATC	4 cut(s)	152, 236, 300, 612
Bsp1720I	GCTNAGC	1 cut(s)	509
BspACI	CCGC	6 cut(s)	126, 162, 296, 364, 455, 524
BspANI	GGCC	3 cut(s)	194, 551, 599
BspCNI	CTCAG	1 cut(s)	522
BspFNI	CGCG	2 cut(s)	263, 457
BspLI	GGNNCC	2 cut(s)	238, 672
BspPI	GGATC	3 cut(s)	147, 231, 244
BspT104I	TTCGAA	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	526
BssECI	CCNNGG	1 cut(s)	659
BssMI	GATC	4 cut(s)	152, 236, 300, 612
BssNI	GRCGYC	2 cut(s)	656, 701
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	585
Bst6I	CTCTTC	2 cut(s)	13, 597
BstACI	GRCGYC	2 cut(s)	656, 701
BstBI	TTCGAA	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	509
BstF5I	GGATG	3 cut(s)	50, 291, 637
BstFNI	CGCG	2 cut(s)	263, 457
BstH2I	RGCGCY	2 cut(s)	364, 503
BstHHI	GCGC	2 cut(s)	363, 502
BstKTI	GATC	4 cut(s)	155, 239, 303, 615
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	4 cut(s)	152, 236, 300, 612
BstMWI	GCNNNNNNNGC	7 cut(s)	72, 75, 84, 328, 358, 557, 643
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	7 cut(s)	189, 411, 443, 462, 495, 546, 551
BstSLI	GKGCMC	1 cut(s)	573
BstUI	CGCG	2 cut(s)	263, 457
BstV1I	GCAGC	5 cut(s)	75, 78, 87, 334, 563
BstX2I	RGATCY	2 cut(s)	152, 236
BstYI	RGATCY	2 cut(s)	152, 236
BsuRI	GGCC	3 cut(s)	194, 551, 599
BtsCI	GGATG	3 cut(s)	50, 291, 637
CfoI	GCGC	2 cut(s)	363, 502
Cfr13I	GGNCC	1 cut(s)	549
CseI	GACGC	1 cut(s)	664
CviAII	CATG	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	509
DpnI	GATC	4 cut(s)	154, 238, 302, 614
DpnII	GATC	4 cut(s)	152, 236, 300, 612
Eam1104I	CTCTTC	2 cut(s)	13, 597
EarI	CTCTTC	2 cut(s)	13, 597
Eco24I	GRGCYC	1 cut(s)	675
Eco57I	CTGAAG	2 cut(s)	398, 699
EcoRII	CCWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	675
FaeI	CATG	1 cut(s)	148
FaiI	YATR	2 cut(s)	146, 530
FatI	CATG	1 cut(s)	144
FauI	CCCGC	1 cut(s)	303
Fnu4HI	GCNGC	8 cut(s)	64, 67, 76, 323, 364, 455, 524, 577
FokI	GGATG	3 cut(s)	37, 278, 624
FriOI	GRGCYC	1 cut(s)	675
Fsp4HI	GCNGC	8 cut(s)	64, 67, 76, 323, 364, 455, 524, 577
FspBI	CTAG	1 cut(s)	708
GlaI	GCGC	2 cut(s)	362, 501
GluI	GCNGC	8 cut(s)	64, 67, 76, 323, 364, 455, 524, 577
HaeII	RGCGCY	2 cut(s)	364, 503
HaeIII	GGCC	3 cut(s)	194, 551, 599
HapII	CCGG	9 cut(s)	234, 342, 388, 413, 444, 464, 497, 547, 552
HgaI	GACGC	1 cut(s)	664
HhaI	GCGC	2 cut(s)	363, 502
Hin1I	GRCGYC	2 cut(s)	656, 701
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	2 cut(s)	361, 500
HinP1I	GCGC	2 cut(s)	361, 500
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	4 cut(s)	99, 158, 382, 665
HpaII	CCGG	9 cut(s)	234, 342, 388, 413, 444, 464, 497, 547, 552
Hpy166II	GTNNAC	2 cut(s)	231, 309
Hpy188I	TCNGA	3 cut(s)	157, 244, 670
Hpy188III	TCNNGA	3 cut(s)	488, 694, 732
Hpy8I	GTNNAC	2 cut(s)	231, 309
Hpy99I	CGWCG	5 cut(s)	646, 658, 700, 703, 706
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	585
HpyCH4IV	ACGT	1 cut(s)	701
HpyCH4V	TGCA	1 cut(s)	637
HpyF10VI	GCNNNNNNNGC	7 cut(s)	72, 75, 84, 328, 358, 557, 643
HpyF3I	CTNAG	1 cut(s)	509
HpySE526I	ACGT	1 cut(s)	701
Hsp92I	GRCGYC	2 cut(s)	656, 701
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	2 cut(s)	361, 500
Kzo9I	GATC	4 cut(s)	152, 236, 300, 612
LmnI	GCTCC	2 cut(s)	112, 670
Lsp1109I	GCAGC	5 cut(s)	75, 78, 87, 334, 563
LweI	GCATC	2 cut(s)	268, 646
MaeI	CTAG	1 cut(s)	708
MaeII	ACGT	1 cut(s)	701
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	4 cut(s)	154, 238, 302, 614
MbiI	CCGCTC	1 cut(s)	526
MboI	GATC	4 cut(s)	152, 236, 300, 612
MboII	GAAGA	5 cut(s)	30, 391, 614, 717, 720
MflI	RGATCY	2 cut(s)	152, 236
MhlI	GDGCHC	3 cut(s)	510, 573, 675
MluCI	AATT	2 cut(s)	421, 562
MlyI	GAGTC	2 cut(s)	93, 152
MmeI	TCCRAC	2 cut(s)	180, 450
MnlI	CCTC	5 cut(s)	19, 250, 408, 589, 654
MspI	CCGG	9 cut(s)	234, 342, 388, 413, 444, 464, 497, 547, 552
MspR9I	CCNGG	7 cut(s)	191, 413, 445, 464, 497, 548, 553
Mva1269I	GAATGC	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	2 cut(s)	263, 457
MwoI	GCNNNNNNNGC	7 cut(s)	72, 75, 84, 328, 358, 557, 643
NciI	CCSGG	6 cut(s)	413, 445, 464, 497, 548, 553
NdeII	GATC	4 cut(s)	152, 236, 300, 612
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	2 cut(s)	238, 672
NmeAIII	GCCGAG	2 cut(s)	504, 684
NmuCI	GTSAC	1 cut(s)	517
NspV	TTCGAA	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 650
PctI	GAATGC	1 cut(s)	483
PfeI	GAWTC	2 cut(s)	382, 665
PflFI	GACNNNGTC	1 cut(s)	700
PkrI	GCNGC	8 cut(s)	65, 68, 77, 324, 365, 456, 525, 578
PleI	GAGTC	2 cut(s)	93, 152
PpsI	GAGTC	2 cut(s)	93, 152
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	238, 672
PspPI	GGNCC	1 cut(s)	549
PsuI	RGATCY	2 cut(s)	152, 236
PsyI	GACNNNGTC	1 cut(s)	700
SatI	GCNGC	8 cut(s)	64, 67, 76, 323, 364, 455, 524, 577
Sau3AI	GATC	4 cut(s)	152, 236, 300, 612
Sau96I	GGNCC	1 cut(s)	549
SchI	GAGTC	2 cut(s)	93, 152
ScrFI	CCNGG	7 cut(s)	191, 413, 445, 464, 497, 548, 553
SduI	GDGCHC	3 cut(s)	510, 573, 675
SetI	ASST	8 cut(s)	11, 109, 185, 261, 354, 704, 715, 721
SfaNI	GCATC	2 cut(s)	268, 646
SfuI	TTCGAA	1 cut(s)	269
Sse9I	AATT	2 cut(s)	421, 562
SsiI	CCGC	6 cut(s)	126, 162, 296, 364, 455, 524
SspMI	CTAG	1 cut(s)	708
StyD4I	CCNGG	7 cut(s)	189, 411, 443, 462, 495, 546, 551
TaaI	ACNGT	1 cut(s)	585
TaiI	ACGT	1 cut(s)	704
TaqI	TCGA	2 cut(s)	269, 489
TasI	AATT	2 cut(s)	421, 562
TauI	GCSGC	3 cut(s)	366, 457, 526
TfiI	GAWTC	2 cut(s)	382, 665
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	5 cut(s)	63, 66, 75, 322, 576
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	1 cut(s)	711
TspGWI	ACGGA	1 cut(s)	630
Tth111I	GACNNNGTC	1 cut(s)	700
XapI	RAATTY	1 cut(s)	562
XspI	CTAG	1 cut(s)	708
ZraI	GACGTC	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.