Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012106

Physical Location & Seq

Genomic Coordinates Reverse (-)

38123900 .. 38126080

Gene Structure 2181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1293000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAATCCTCACCCAGGTACCACCAACCGGATAACCCAACTCCTTCTTTGCTTACCTCCCCAAACAGCTACAGCTCCAACAGCAGCACAAACAGCTCCAACAGCAACCACCACCTCAACGGCGGAGCTCCCCCAACAACCCCAACTCCCCAGCCCCCTAAACCCTACACCAGATCCGAACCCACCAACCCGTACCCGACCACCTTCGTCCAAGCTGACACCTCCTCCTTCAAACAGGTCGTTCAAATGCTCACCGGCTCCACCGAAACCGCTAAGCAAGCCTCTTCGAAACCCGCATCCGACCCGCACCCGAAAACCCACATCCCGCCCATCAAATCCACGCACACAAAACAACAATCCGGATCCGGGTTCAAGCTCTACGAGCGCCGGAACTCCCTCAAGAACCTCCGGATTAACCCTCTAATCCCCGTCTTCAGCTCCGCAGCTTCCGGATTCTCGCCGCGAAATCCCGAGATTTTATCTCCGAGCATTCTCGATTTTCCTGCTTTGGTTCTCAGCCCGGTCACGCCGCTGATATCCGACCCGTTTGGCCGGTCCGGGACGGCGAATTACGGCCCGAATCCAAATGGGTGTTCGAATTTGAACAGGGAGGCGGAAGAGAAGGCGATTAAAGAAAAGAGTTTTTACTTGCACCCGTCCCCGAACACGACGCCGCGGGAATCGGAGCCCCGGCTGCTGCCTCTGTTCCCGACGACGTCGCCGAGAGCTGCTTCAGGAGGATTGATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0010185 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0043433 GO:0044092 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051245 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0080134 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

251

Amino Acids

26.97

Weight (kDa)

9.46

Isoelectric Point (pI)

58.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	64 - 90	7.5e-11	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28280 AT1G28280
fragaria_vesca	FvH4_3g09030 FvH4_3g09030 FvH4_3g09030 FvH4_3g09030
malus_domestica	MD00G1116300.v1.1 MD10G1293000.v1.1
prunus_persica	Prupe.4G048900_v2.0.a1
pyrus_communis	pycom10g24500
rosa_chinensis	RchiOBHm_Chr5g0008641
rosa_laevigata	RLG00000031589
rosa_multiflora	Rmu_sc0001665.1_g000029
rosa_rugosa	Rorug04G0437600
rosa_samantha	Rh5AG066200 Rh5BG063500 Rh5CG073700 Rh5DG062700
rosa_wichuraiana	Rw5G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	719
Acc65I	GGTACC	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	18
AccII	CGCG	2 cut(s)	463, 676
AccIII	TCCGGA	3 cut(s)	359, 408, 449
AclWI	GGATC	3 cut(s)	168, 357, 370
AcoI	YGGCCR	1 cut(s)	550
AcsI	RAATTY	1 cut(s)	598
AcuI	CTGAAG	2 cut(s)	418, 717
AcyI	GRCGYC	2 cut(s)	671, 716
AfaI	GTAC	2 cut(s)	20, 194
AfiI	CCNNNNNNNGG	3 cut(s)	15, 28, 366
AgsI	TTSAA	4 cut(s)	232, 245, 373, 604
AjnI	CCWGG	1 cut(s)	14
AjuI	GAANNNNNNNTTGG	2 cut(s)	577, 609
AluBI	AGCT	9 cut(s)	69, 75, 96, 128, 215, 376, 438, 446, 728
AluI	AGCT	9 cut(s)	69, 75, 96, 128, 215, 376, 438, 446, 728
Alw21I	GWGCWC	1 cut(s)	130
AlwI	GGATC	3 cut(s)	168, 357, 370
Ama87I	CYCGRG	1 cut(s)	470
Aor13HI	TCCGGA	3 cut(s)	359, 408, 449
AoxI	GGCC	2 cut(s)	550, 574
ApeKI	GCWGC	5 cut(s)	84, 443, 694, 697, 728
ApoI	RAATTY	1 cut(s)	598
Asp718I	GGTACC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	2 cut(s)	555, 575
AsuC2I	CCSGG	4 cut(s)	367, 521, 559, 691
AsuHPI	GGTGA	2 cut(s)	3, 244
AsuII	TTCGAA	2 cut(s)	287, 596
AvaI	CYCGRG	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	555
BaeI	ACNNNNGTAYC	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	18
BanII	GRGCYC	2 cut(s)	130, 690
BbsI	GAAGAC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	5 cut(s)	96, 455, 681, 684, 715
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	3 cut(s)	136, 579, 589
BcgI	CGANNNNNNTGC	2 cut(s)	485, 519
BciT130I	CCWGG	1 cut(s)	16
BcnI	CCSGG	4 cut(s)	367, 521, 559, 691
BfmI	CTRYAG	1 cut(s)	70
BfoI	RGCGCY	1 cut(s)	388
BisI	GCNGC	8 cut(s)	85, 444, 461, 530, 674, 695, 698, 729
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	8 cut(s)	86, 445, 462, 531, 675, 696, 699, 730
Bme1390I	CCNGG	5 cut(s)	16, 367, 521, 559, 691
Bme18I	GGWCC	1 cut(s)	555
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	2 cut(s)	555, 575
BmiI	GGNNCC	4 cut(s)	20, 259, 364, 687
BmrFI	CCNGG	5 cut(s)	16, 367, 521, 559, 691
BmsI	GCATC	1 cut(s)	305
BpiI	GAAGAC	1 cut(s)	424
Bpu1102I	GCTNAGC	1 cut(s)	273
Bpu14I	TTCGAA	2 cut(s)	287, 596
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	4 cut(s)	367, 521, 559, 691
BsaHI	GRCGYC	2 cut(s)	671, 716
BsaJI	CCNNGG	3 cut(s)	14, 674, 689
BsaWI	WCCGGW	4 cut(s)	28, 359, 408, 449
BsaXI	ACNNNNNCTCC	4 cut(s)	130, 160, 209, 239
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 28, 366
Bse118I	RCCGGY	2 cut(s)	254, 552
BseAI	TCCGGA	3 cut(s)	359, 408, 449
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	3 cut(s)	14, 674, 689
BseGI	GGATG	2 cut(s)	296, 321
BseLI	CCNNNNNNNGG	3 cut(s)	15, 28, 366
BseMII	CTCAG	1 cut(s)	529
BseRI	GAGGAG	1 cut(s)	214
BseXI	GCAGC	5 cut(s)	96, 455, 681, 684, 715
BseYI	CCCAGC	1 cut(s)	150
Bsh1236I	CGCG	2 cut(s)	463, 676
BshFI	GGCC	2 cut(s)	552, 576
BshNI	GGYRCC	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	130
BsiHKCI	CYCGRG	1 cut(s)	470
BslFI	GGGAC	2 cut(s)	574, 643
BslI	CCNNNNNNNGG	3 cut(s)	15, 28, 366
BsmFI	GGGAC	2 cut(s)	574, 643
BsmI	GAATGC	1 cut(s)	489
BsnI	GGCC	2 cut(s)	552, 576
BsoBI	CYCGRG	1 cut(s)	470
Bsp119I	TTCGAA	2 cut(s)	287, 596
Bsp1286I	GDGCHC	2 cut(s)	130, 690
Bsp13I	TCCGGA	3 cut(s)	359, 408, 449
Bsp143I	GATC	2 cut(s)	173, 362
Bsp1720I	GCTNAGC	1 cut(s)	273
BspANI	GGCC	2 cut(s)	552, 576
BspCNI	CTCAG	1 cut(s)	528
BspEI	TCCGGA	3 cut(s)	359, 408, 449
BspFNI	CGCG	2 cut(s)	463, 676
BspLI	GGNNCC	4 cut(s)	20, 259, 364, 687
BspPI	GGATC	3 cut(s)	168, 357, 370
BspT104I	TTCGAA	2 cut(s)	287, 596
BspT107I	GGYRCC	1 cut(s)	18
BsrFI	RCCGGY	2 cut(s)	254, 552
BssAI	RCCGGY	2 cut(s)	254, 552
BssECI	CCNNGG	3 cut(s)	14, 674, 689
BssMI	GATC	2 cut(s)	173, 362
BssNI	GRCGYC	2 cut(s)	671, 716
Bst2UI	CCWGG	1 cut(s)	16
Bst6I	CTCTTC	2 cut(s)	289, 612
BstACI	GRCGYC	2 cut(s)	671, 716
BstBI	TTCGAA	2 cut(s)	287, 596
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	2 cut(s)	273, 515
BstDSI	CCRYGG	1 cut(s)	674
BstENI	CCTNNNNNAGG	1 cut(s)	13
BstF5I	GGATG	2 cut(s)	296, 321
BstFNI	CGCG	2 cut(s)	463, 676
BstH2I	RGCGCY	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	2 cut(s)	176, 365
BstMBI	GATC	2 cut(s)	173, 362
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 93, 102, 278, 382, 694
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	5 cut(s)	14, 365, 519, 557, 689
BstSFI	CTRYAG	1 cut(s)	70
BstUI	CGCG	2 cut(s)	463, 676
BstV1I	GCAGC	5 cut(s)	96, 455, 681, 684, 715
BstV2I	GAAGAC	1 cut(s)	424
BstX2I	RGATCY	2 cut(s)	173, 362
BstYI	RGATCY	2 cut(s)	173, 362
BsuRI	GGCC	2 cut(s)	552, 576
BtgI	CCRYGG	1 cut(s)	674
BtsCI	GGATG	2 cut(s)	296, 321
Cac8I	GCNNGC	1 cut(s)	279
CfoI	GCGC	1 cut(s)	387
Cfr10I	RCCGGY	2 cut(s)	254, 552
Cfr13I	GGNCC	2 cut(s)	555, 575
Cfr42I	CCGCGG	1 cut(s)	677
CpoI	CGGWCCG	1 cut(s)	555
CseI	GACGC	1 cut(s)	679
Csp6I	GTAC	2 cut(s)	19, 193
CspI	CGGWCCG	1 cut(s)	555
CviQI	GTAC	2 cut(s)	19, 193
DdeI	CTNAG	2 cut(s)	273, 515
DpnI	GATC	2 cut(s)	175, 364
DpnII	GATC	2 cut(s)	173, 362
EaeI	YGGCCR	1 cut(s)	550
Eam1104I	CTCTTC	2 cut(s)	289, 612
EarI	CTCTTC	2 cut(s)	289, 612
EciI	GGCGGA	2 cut(s)	138, 629
Ecl136II	GAGCTC	1 cut(s)	128
Eco24I	GRGCYC	2 cut(s)	130, 690
Eco32I	GATATC	1 cut(s)	537
Eco47I	GGWCC	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	128
Eco57I	CTGAAG	2 cut(s)	418, 717
Eco88I	CYCGRG	1 cut(s)	470
EcoICRI	GAGCTC	1 cut(s)	128
EcoNI	CCTNNNNNAGG	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	14
EcoRV	GATATC	1 cut(s)	537
EcoT38I	GRGCYC	2 cut(s)	130, 690
FaqI	GGGAC	2 cut(s)	574, 643
FauI	CCCGC	4 cut(s)	301, 312, 333, 669
Fnu4HI	GCNGC	8 cut(s)	85, 444, 461, 530, 674, 695, 698, 729
FokI	GGATG	2 cut(s)	283, 308
FriOI	GRGCYC	2 cut(s)	130, 690
Fsp4HI	GCNGC	8 cut(s)	85, 444, 461, 530, 674, 695, 698, 729
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	8 cut(s)	85, 444, 461, 530, 674, 695, 698, 729
GsaI	CCCAGC	1 cut(s)	154
HaeII	RGCGCY	1 cut(s)	388
HaeIII	GGCC	2 cut(s)	552, 576
HgaI	GACGC	1 cut(s)	679
HhaI	GCGC	1 cut(s)	387
Hin1I	GRCGYC	2 cut(s)	671, 716
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HinfI	GANTC	4 cut(s)	5, 453, 580, 680
HphI	GGTGA	2 cut(s)	3, 244
Hpy188I	TCNGA	5 cut(s)	178, 301, 486, 541, 685
Hpy188III	TCNNGA	8 cut(s)	360, 400, 409, 450, 470, 494, 709, 735
Hpy99I	CGWCG	4 cut(s)	673, 715, 718, 721
HpyAV	CCTTC	4 cut(s)	54, 214, 238, 616
HpyCH4IV	ACGT	1 cut(s)	716
HpyCH4V	TGCA	1 cut(s)	652
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 93, 102, 278, 382, 694
HpyF3I	CTNAG	2 cut(s)	273, 515
HpySE526I	ACGT	1 cut(s)	716
Hsp92I	GRCGYC	2 cut(s)	671, 716
HspAI	GCGC	1 cut(s)	385
Kpn2I	TCCGGA	3 cut(s)	359, 408, 449
KpnI	GGTACC	1 cut(s)	22
KspI	CCGCGG	1 cut(s)	677
Kzo9I	GATC	2 cut(s)	173, 362
LmnI	GCTCC	7 cut(s)	80, 101, 125, 133, 263, 443, 685
Lsp1109I	GCAGC	5 cut(s)	96, 455, 681, 684, 715
LweI	GCATC	1 cut(s)	305
MaeII	ACGT	1 cut(s)	716
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	2 cut(s)	175, 364
MboI	GATC	2 cut(s)	173, 362
MboII	GAAGA	3 cut(s)	276, 424, 629
MflI	RGATCY	2 cut(s)	173, 362
MhlI	GDGCHC	2 cut(s)	130, 690
MluCI	AATT	2 cut(s)	568, 598
MmeI	TCCRAC	4 cut(s)	102, 123, 324, 564
MroI	TCCGGA	3 cut(s)	359, 408, 449
MseI	TTAA	2 cut(s)	414, 630
MspA1I	CMGCKG	2 cut(s)	532, 676
MspR9I	CCNGG	5 cut(s)	16, 367, 521, 559, 691
Mva1269I	GAATGC	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	16
MvnI	CGCG	2 cut(s)	463, 676
MwoI	GCNNNNNNNGC	6 cut(s)	81, 93, 102, 278, 382, 694
NciI	CCSGG	4 cut(s)	367, 521, 559, 691
NdeII	GATC	2 cut(s)	173, 362
NlaIV	GGNNCC	4 cut(s)	20, 259, 364, 687
NmeAIII	GCCGAG	1 cut(s)	747
NmuCI	GTSAC	1 cut(s)	523
NspV	TTCGAA	2 cut(s)	287, 596
PcsI	WCGNNNNNNNCGW	1 cut(s)	719
PctI	GAATGC	1 cut(s)	489
PfeI	GAWTC	4 cut(s)	5, 453, 580, 680
PflFI	GACNNNGTC	1 cut(s)	715
PfoI	TCCNGGA	1 cut(s)	557
PkrI	GCNGC	8 cut(s)	86, 445, 462, 531, 675, 696, 699, 730
Psp124BI	GAGCTC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	4 cut(s)	20, 259, 364, 687
PspPI	GGNCC	2 cut(s)	555, 575
PsuI	RGATCY	2 cut(s)	173, 362
PsyI	GACNNNGTC	1 cut(s)	715
RsaI	GTAC	2 cut(s)	20, 194
RsaNI	GTAC	2 cut(s)	19, 193
Rsr2I	CGGWCCG	1 cut(s)	555
RsrII	CGGWCCG	1 cut(s)	555
SacI	GAGCTC	1 cut(s)	130
SacII	CCGCGG	1 cut(s)	677
SaqAI	TTAA	2 cut(s)	414, 630
SatI	GCNGC	8 cut(s)	85, 444, 461, 530, 674, 695, 698, 729
Sau3AI	GATC	2 cut(s)	173, 362
Sau96I	GGNCC	2 cut(s)	555, 575
ScrFI	CCNGG	5 cut(s)	16, 367, 521, 559, 691
SduI	GDGCHC	2 cut(s)	130, 690
SfaNI	GCATC	1 cut(s)	305
SfcI	CTRYAG	1 cut(s)	70
Sfr303I	CCGCGG	1 cut(s)	677
SfuI	TTCGAA	2 cut(s)	287, 596
SgrBI	CCGCGG	1 cut(s)	677
SinI	GGWCC	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	2 cut(s)	568, 598
SstI	GAGCTC	1 cut(s)	130
StyD4I	CCNGG	5 cut(s)	14, 365, 519, 557, 689
TaiI	ACGT	1 cut(s)	719
TaqI	TCGA	3 cut(s)	287, 495, 596
TasI	AATT	2 cut(s)	568, 598
TauI	GCSGC	3 cut(s)	463, 532, 676
TfiI	GAWTC	4 cut(s)	5, 453, 580, 680
Tru1I	TTAA	2 cut(s)	414, 630
Tru9I	TTAA	2 cut(s)	414, 630
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	5 cut(s)	84, 443, 694, 697, 728
Tsp45I	GTSAC	1 cut(s)	523
Tth111I	GACNNNGTC	1 cut(s)	715
VpaK11BI	GGWCC	1 cut(s)	555
XagI	CCTNNNNNAGG	1 cut(s)	13
XapI	RAATTY	1 cut(s)	598
ZraI	GACGTC	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.