AT1G29150

motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
10180302 .. 10182808
2507 bp
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UTR
Exon/CDS
Intron
AT1G29150.1

Sequence Viewer

Length: 1260 bp
ATGGTTTCCTATCGTGCTACCACAGAGACGATTTCCCTGGCTTTAGAAGCCAACAGCTCGGAGGCTATTACGATACTGTACCAGGTTTTGGAAGACCCTTCTTCATCTCCTGAGGCTATACGGATCAAGGAGCAAGCGATTACAAACCTTTGTGATCGATTGACTGAAGAGAAGAGAGGTGAGGATCTCCGGAAACTGTTGACCAAGTTGAGGCCTTTCTTTTCCTTAATCCCCAAGGCGAAAACTGCGAAAATCGTCAGAGGAATCATTGATGCTGTGGCAAAGATTCCTGGAACAACTGATCTCCAGATCACTCTCTGCAAAGAGATGGTCGAATGGACCCGCGCTGAGAAGCGTACTTTCCTCAGGCAGCGAGTAGAGGCTAGGCTTGCAGCTCTTTTGATGGAGAACAAGGAGTATGTTGAAGCTTTGGCGTTGTTGAGTACTTTGGTAAAAGAGGTTAGGAGATTAGATGATAAGCTCCTTCTGGTCGACATAGACTTGCTGGAGAGCAAACTTCACTTCTCATTGAGAAACTTACCCAAGGCAAAAGCTGCACTCACTGCAGCTAGGACAGCTGCTAACGCTATATATGTCCCACCAGCTCAACAAGGCACGATAGATCTGCAGAGTGGGATTCTTCATGCTGAAGAGAAAGACTACAAAACCGGATACAGTTACTTCTTTGAAGCCTTTGAGTCCTTCAACGCTCTCGGAGATCCGAGAGCGGTTTTCAGTTTGAAGTACATGTTACTGTGCAAGATCATGGTTAGCCAAGCTGATGATGTTGCAGGAATAATCTCCTCAAAGGCTGGACTACAGTACGTTGGCCCTGACCTGGATGCCATGAAAGCAGTCGCTGATGCTCACTCGAAGAGGTCCTTGAAGTTGTTTGAGAACGCACTCCGTGACTACAAAGCACAGCTTGAAGATGACCCAATTGTCCACAGGCATCTCTCTTCTCTCTATGACACGCTTCTGGAGCAAAATCTGTGTCGTTTGATCGAGCCCTTCTCAAGAGTTGAGATAGCTCACATTGCTGAGCTCATTGGATTGCCGCTCGACCATGTGGAAAAGAAGCTATCTCAGATGATACTCGACAAGAAATTTGCAGGTACCTTGGATCAAGGAGCTGGATGCCTCATCATCTTCGAAGACCCAAAGGCAGATGCTATCTACTCGGCTACCCTCGAAACCATTGCAAACATGGGGAAGGTCGTCGACAGCCTTTATGTCCGGTCTGCCAAAATCATGTCCTGA

Protein Analysis

419

Amino Acids

46.75

Weight (kDa)

6.24

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPN6_N PF18055 16 - 125 2.1e-33 26S proteasome regulatory subunit RPN6 N-terminal domain
PCI PF01399 302 - 384 3e-21 PCI domain
RPN6_C_helix PF18503 389 - 415 8.2e-12 26S proteasome subunit RPN6 C-terminal helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 941
Acc36I ACCTGC 1 cut(s) 1103
Acc65I GGTACC 1 cut(s) 1115
AccB1I GGYRCC 1 cut(s) 1115
AccB7I CCANNNNNTGG 1 cut(s) 88
AccBSI CCGCTC 2 cut(s) 728, 1060
AccI GTMKAC 2 cut(s) 492, 1221
AccII CGCG 1 cut(s) 345
AccIII TCCGGA 1 cut(s) 189
AciI CCGC 3 cut(s) 343, 728, 1058
AclWI GGATC 4 cut(s) 131, 192, 713, 1131
AcsI RAATTY 1 cut(s) 1106
AcuI CTGAAG 2 cut(s) 186, 669
AdeI CACNNNGTG 1 cut(s) 908
AfaI GTAC 6 cut(s) 80, 358, 445, 746, 824, 1117
AfiI CCNNNNNNNGG 3 cut(s) 88, 210, 838
AflIII ACRYGT 1 cut(s) 747
AgsI TTSAA 6 cut(s) 425, 689, 706, 742, 886, 929
AjnI CCWGG 4 cut(s) 36, 81, 289, 837
Alw21I GWGCWC 1 cut(s) 1047
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 4 cut(s) 131, 192, 713, 1131
AlwNI CAGNNNCTG 1 cut(s) 860
Aor13HI TCCGGA 1 cut(s) 189
AoxI GGCC 2 cut(s) 212, 829
ApeKI GCWGC 5 cut(s) 370, 392, 554, 566, 578
ApoI RAATTY 1 cut(s) 1106
ArsI GACNNNNNNTTYG 6 cut(s) 315, 347, 979, 1011, 1091, 1123
Asp718I GGTACC 1 cut(s) 1115
AspLEI GCGC 1 cut(s) 347
AspS9I GGNCC 3 cut(s) 339, 830, 879
AsuHPI GGTGA 1 cut(s) 191
AsuII TTCGAA 1 cut(s) 1152
AvaII GGWCC 2 cut(s) 339, 879
AxyI CCTNAGG 2 cut(s) 111, 365
BanI GGYRCC 1 cut(s) 1115
BanII GRGCYC 2 cut(s) 1011, 1047
BbsI GAAGAC 2 cut(s) 99, 1161
Bbv12I GWGCWC 1 cut(s) 1047
BbvI GCAGC 5 cut(s) 382, 404, 541, 565, 578
BccI CCATC 2 cut(s) 322, 397
BcgI CGANNNNNNTGC 4 cut(s) 607, 641, 1181, 1215
BciT130I CCWGG 4 cut(s) 38, 83, 291, 839
BciVI GTATCC 1 cut(s) 665
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 2 cut(s) 384, 570
BfmI CTRYAG 3 cut(s) 564, 626, 818
BfuAI ACCTGC 1 cut(s) 1103
BfuI GTATCC 1 cut(s) 665
BglII AGATCT 1 cut(s) 622
BisI GCNGC 6 cut(s) 371, 393, 555, 567, 579, 1058
BlpI GCTNAGC 1 cut(s) 1041
BlsI GCNGC 6 cut(s) 372, 394, 556, 568, 580, 1059
BmcAI AGTACT 1 cut(s) 445
Bme1390I CCNGG 4 cut(s) 38, 83, 291, 839
Bme18I GGWCC 2 cut(s) 339, 879
BmgT120I GGNCC 3 cut(s) 339, 830, 879
BmiI GGNNCC 2 cut(s) 341, 1117
BmrFI CCNGG 4 cut(s) 38, 83, 291, 839
BmsI GCATC 6 cut(s) 262, 832, 853, 961, 1127, 1159
BpiI GAAGAC 2 cut(s) 99, 1161
BplI GAGNNNNNCTC 2 cut(s) 998, 1030
BpmI CTGGAG 3 cut(s) 290, 527, 1001
Bpu1102I GCTNAGC 1 cut(s) 1041
Bpu14I TTCGAA 1 cut(s) 1152
BpuEI CTTGAG 1 cut(s) 1000
Bsa29I ATCGAT 1 cut(s) 157
BsaJI CCNNGG 4 cut(s) 36, 234, 543, 1119
BsaWI WCCGGW 3 cut(s) 189, 668, 1236
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 210, 838
Bse21I CCTNAGG 2 cut(s) 111, 365
Bse3DI GCAATG 2 cut(s) 1035, 1197
BseAI TCCGGA 1 cut(s) 189
BseBI CCWGG 4 cut(s) 38, 83, 291, 839
BseCI ATCGAT 1 cut(s) 157
BseDI CCNNGG 4 cut(s) 36, 234, 543, 1119
BseGI GGATG 2 cut(s) 847, 1142
BseLI CCNNNNNNNGG 3 cut(s) 88, 210, 838
BseMI GCAATG 2 cut(s) 1035, 1197
BseMII CTCAG 5 cut(s) 102, 339, 379, 1032, 1100
BseRI GAGGAG 1 cut(s) 793
BseXI GCAGC 5 cut(s) 382, 404, 541, 565, 578
BsgI GTGCAG 1 cut(s) 540
Bsh1236I CGCG 1 cut(s) 345
BshFI GGCC 2 cut(s) 214, 831
BshNI GGYRCC 1 cut(s) 1115
BshVI ATCGAT 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 1047
BsiSI CCGG 3 cut(s) 190, 669, 1237
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 3 cut(s) 88, 210, 838
BsmAI GTCTC 1 cut(s) 20
BsmBI CGTCTC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 581
BsnI GGCC 2 cut(s) 214, 831
Bsp119I TTCGAA 1 cut(s) 1152
Bsp1286I GDGCHC 2 cut(s) 1011, 1047
Bsp13I TCCGGA 1 cut(s) 189
Bsp1720I GCTNAGC 1 cut(s) 1041
BspACI CCGC 3 cut(s) 343, 728, 1058
BspANI GGCC 2 cut(s) 214, 831
BspCNI CTCAG 5 cut(s) 103, 340, 378, 1033, 1099
BspDI ATCGAT 1 cut(s) 157
BspEI TCCGGA 1 cut(s) 189
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 2 cut(s) 341, 1117
BspMAI CTGCAG 2 cut(s) 568, 630
BspMI ACCTGC 1 cut(s) 1103
BspPI GGATC 4 cut(s) 131, 192, 713, 1131
BspT104I TTCGAA 1 cut(s) 1152
BspT107I GGYRCC 1 cut(s) 1115
BsrBI CCGCTC 2 cut(s) 728, 1060
BsrDI GCAATG 2 cut(s) 1035, 1197
BssECI CCNNGG 4 cut(s) 36, 234, 543, 1119
BssT1I CCWWGG 3 cut(s) 234, 543, 1119
Bst2UI CCWGG 4 cut(s) 38, 83, 291, 839
Bst4CI ACNGT 5 cut(s) 78, 198, 677, 756, 822
Bst6I CTCTTC 5 cut(s) 162, 167, 645, 869, 964
BstAPI GCANNNNNTGC 2 cut(s) 554, 563
BstBI TTCGAA 1 cut(s) 1152
BstC8I GCNNGC 2 cut(s) 135, 390
BstDEI CTNAG 5 cut(s) 111, 348, 365, 1041, 1086
BstF5I GGATG 2 cut(s) 847, 1142
BstFNI CGCG 1 cut(s) 345
BstHHI GCGC 1 cut(s) 347
BstMAI GTCTC 1 cut(s) 20
BstNI CCWGG 4 cut(s) 38, 83, 291, 839
BstNSI RCATGY 1 cut(s) 751
BstSCI CCNGG 4 cut(s) 36, 81, 289, 837
BstSFI CTRYAG 3 cut(s) 564, 626, 818
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 5 cut(s) 382, 404, 541, 565, 578
BstV2I GAAGAC 2 cut(s) 99, 1161
BstX2I RGATCY 3 cut(s) 184, 622, 718
BstYI RGATCY 3 cut(s) 184, 622, 718
Bsu15I ATCGAT 1 cut(s) 157
Bsu36I CCTNAGG 2 cut(s) 111, 365
BsuI GTATCC 1 cut(s) 665
BsuRI GGCC 2 cut(s) 214, 831
BsuTUI ATCGAT 1 cut(s) 157
BtsCI GGATG 2 cut(s) 847, 1142
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 1 cut(s) 561
BveI ACCTGC 1 cut(s) 1103
Cac8I GCNNGC 2 cut(s) 135, 390
CaiI CAGNNNCTG 1 cut(s) 860
CfoI GCGC 1 cut(s) 347
Cfr13I GGNCC 3 cut(s) 339, 830, 879
ClaI ATCGAT 1 cut(s) 157
CsiI ACCWGGT 1 cut(s) 81
Csp6I GTAC 6 cut(s) 79, 357, 444, 745, 823, 1116
CviAII CATG 7 cut(s) 644, 748, 766, 847, 1067, 1207, 1252
CviQI GTAC 6 cut(s) 79, 357, 444, 745, 823, 1116
DdeI CTNAG 5 cut(s) 111, 348, 365, 1041, 1086
DraIII CACNNNGTG 1 cut(s) 908
DrdI GACNNNNNNGTC 1 cut(s) 941
DseDI GACNNNNNNGTC 1 cut(s) 941
Eam1104I CTCTTC 5 cut(s) 162, 167, 645, 869, 964
EarI CTCTTC 5 cut(s) 162, 167, 645, 869, 964
Ecl136II GAGCTC 1 cut(s) 1045
Eco130I CCWWGG 3 cut(s) 234, 543, 1119
Eco147I AGGCCT 1 cut(s) 214
Eco24I GRGCYC 2 cut(s) 1011, 1047
Eco47I GGWCC 2 cut(s) 339, 879
Eco53kI GAGCTC 1 cut(s) 1045
Eco57I CTGAAG 2 cut(s) 186, 669
Eco81I CCTNAGG 2 cut(s) 111, 365
EcoICRI GAGCTC 1 cut(s) 1045
EcoO109I RGGNCCY 1 cut(s) 879
EcoRII CCWGG 4 cut(s) 36, 81, 289, 837
EcoT14I CCWWGG 3 cut(s) 234, 543, 1119
EcoT38I GRGCYC 2 cut(s) 1011, 1047
ErhI CCWWGG 3 cut(s) 234, 543, 1119
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 7 cut(s) 647, 751, 769, 850, 1070, 1210, 1255
FalI AAGNNNNNCTT 4 cut(s) 866, 898, 909, 941
FaqI GGGAC 1 cut(s) 581
FatI CATG 7 cut(s) 643, 747, 765, 846, 1066, 1206, 1251
FauI CCCGC 1 cut(s) 350
FblI GTMKAC 2 cut(s) 492, 1221
Fnu4HI GCNGC 6 cut(s) 371, 393, 555, 567, 579, 1058
FokI GGATG 2 cut(s) 854, 1149
FriOI GRGCYC 2 cut(s) 1011, 1047
Fsp4HI GCNGC 6 cut(s) 371, 393, 555, 567, 579, 1058
FspBI CTAG 2 cut(s) 384, 570
GlaI GCGC 1 cut(s) 346
GluI GCNGC 6 cut(s) 371, 393, 555, 567, 579, 1058
GsuI CTGGAG 3 cut(s) 290, 527, 1001
HaeIII GGCC 2 cut(s) 214, 831
HapII CCGG 3 cut(s) 190, 669, 1237
HhaI GCGC 1 cut(s) 347
Hin1II CATG 7 cut(s) 647, 751, 769, 850, 1070, 1210, 1255
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HincII GTYRAC 3 cut(s) 201, 493, 1222
HindII GTYRAC 3 cut(s) 201, 493, 1222
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 4 cut(s) 264, 286, 637, 698
HpaII CCGG 3 cut(s) 190, 669, 1237
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 4 cut(s) 201, 493, 946, 1222
Hpy188I TCNGA 5 cut(s) 61, 260, 716, 723, 1089
Hpy188III TCNNGA 6 cut(s) 110, 190, 307, 980, 1017, 1257
Hpy8I GTNNAC 4 cut(s) 201, 493, 946, 1222
Hpy99I CGWCG 1 cut(s) 1223
HpyAV CCTTC 5 cut(s) 108, 494, 712, 1021, 1207
HpyCH4III ACNGT 5 cut(s) 78, 198, 677, 756, 822
HpyCH4IV ACGT 1 cut(s) 825
HpyCH4V TGCA 9 cut(s) 321, 392, 557, 566, 628, 759, 791, 1112, 1202
HpyF3I CTNAG 5 cut(s) 111, 348, 365, 1041, 1086
HpySE526I ACGT 1 cut(s) 825
Hsp92II CATG 7 cut(s) 647, 751, 769, 850, 1070, 1210, 1255
HspAI GCGC 1 cut(s) 345
Kpn2I TCCGGA 1 cut(s) 189
KpnI GGTACC 1 cut(s) 1119
LmnI GCTCC 4 cut(s) 130, 486, 982, 1130
Lsp1109I GCAGC 5 cut(s) 382, 404, 541, 565, 578
LweI GCATC 6 cut(s) 262, 832, 853, 961, 1127, 1159
MabI ACCWGGT 1 cut(s) 81
MaeI CTAG 2 cut(s) 384, 570
MaeII ACGT 1 cut(s) 825
MaeIII GTNAC 3 cut(s) 677, 750, 908
MbiI CCGCTC 2 cut(s) 728, 1060
MfeI CAATTG 1 cut(s) 939
MflI RGATCY 3 cut(s) 184, 622, 718
MhlI GDGCHC 2 cut(s) 1011, 1047
MluCI AATT 2 cut(s) 939, 1106
MlyI GAGTC 1 cut(s) 707
MroI TCCGGA 1 cut(s) 189
MseI TTAA 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 3 cut(s) 190, 669, 1237
MspR9I CCNGG 4 cut(s) 38, 83, 291, 839
MunI CAATTG 1 cut(s) 939
MvaI CCWGG 4 cut(s) 38, 83, 291, 839
MvnI CGCG 1 cut(s) 345
NlaIII CATG 7 cut(s) 647, 751, 769, 850, 1070, 1210, 1255
NlaIV GGNNCC 2 cut(s) 341, 1117
NmeAIII GCCGAG 1 cut(s) 1160
NmuCI GTSAC 1 cut(s) 908
NspI RCATGY 1 cut(s) 751
NspV TTCGAA 1 cut(s) 1152
PceI AGGCCT 1 cut(s) 214
PciI ACATGT 1 cut(s) 747
PfeI GAWTC 3 cut(s) 264, 286, 637
PflMI CCANNNNNTGG 1 cut(s) 88
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 6 cut(s) 372, 394, 556, 568, 580, 1059
PleI GAGTC 1 cut(s) 706
PpsI GAGTC 1 cut(s) 706
PpuMI RGGWCCY 1 cut(s) 879
PscI ACATGT 1 cut(s) 747
Psp124BI GAGCTC 1 cut(s) 1047
Psp5II RGGWCCY 1 cut(s) 879
Psp6I CCWGG 4 cut(s) 36, 81, 289, 837
PspGI CCWGG 4 cut(s) 36, 81, 289, 837
PspN4I GGNNCC 2 cut(s) 341, 1117
PspPI GGNCC 3 cut(s) 339, 830, 879
PspPPI RGGWCCY 1 cut(s) 879
PstI CTGCAG 2 cut(s) 568, 630
PstNI CAGNNNCTG 1 cut(s) 860
PsuI RGATCY 3 cut(s) 184, 622, 718
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 6 cut(s) 80, 358, 445, 746, 824, 1117
RsaNI GTAC 6 cut(s) 79, 357, 444, 745, 823, 1116
SacI GAGCTC 1 cut(s) 1047
SalI GTCGAC 2 cut(s) 491, 1220
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 6 cut(s) 371, 393, 555, 567, 579, 1058
Sau96I GGNCC 3 cut(s) 339, 830, 879
ScaI AGTACT 1 cut(s) 445
SchI GAGTC 1 cut(s) 707
ScrFI CCNGG 4 cut(s) 38, 83, 291, 839
SduI GDGCHC 2 cut(s) 1011, 1047
SexAI ACCWGGT 1 cut(s) 81
SfaNI GCATC 6 cut(s) 262, 832, 853, 961, 1127, 1159
SfcI CTRYAG 3 cut(s) 564, 626, 818
SfuI TTCGAA 1 cut(s) 1152
SinI GGWCC 2 cut(s) 339, 879
SmlI CTYRAG 1 cut(s) 1015
SmoI CTYRAG 1 cut(s) 1015
Sse9I AATT 2 cut(s) 939, 1106
SseBI AGGCCT 1 cut(s) 214
SsiI CCGC 3 cut(s) 343, 728, 1058
SspMI CTAG 2 cut(s) 384, 570
SstI GAGCTC 1 cut(s) 1047
StuI AGGCCT 1 cut(s) 214
StyD4I CCNGG 4 cut(s) 36, 81, 289, 837
StyI CCWWGG 3 cut(s) 234, 543, 1119
TaaI ACNGT 5 cut(s) 78, 198, 677, 756, 822
TaiI ACGT 1 cut(s) 828
TasI AATT 2 cut(s) 939, 1106
TatI WGTACW 2 cut(s) 443, 744
TauI GCSGC 1 cut(s) 1060
TfiI GAWTC 3 cut(s) 264, 286, 637
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 1 cut(s) 908
TseI GCWGC 5 cut(s) 370, 392, 554, 566, 578
Tsp45I GTSAC 1 cut(s) 908
TspDTI ATGAA 3 cut(s) 93, 632, 863
TspGWI ACGGA 2 cut(s) 136, 896
TspRI CASTG 1 cut(s) 568
Van91I CCANNNNNTGG 1 cut(s) 88
VpaK11BI GGWCC 2 cut(s) 339, 879
XapI RAATTY 1 cut(s) 1106
XceI RCATGY 1 cut(s) 751
XcmI CCANNNNNNNNNTGG 1 cut(s) 1204
XmiI GTMKAC 2 cut(s) 492, 1221
XspI CTAG 2 cut(s) 384, 570
ZrmI AGTACT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.