Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027506.1

Orthogroup ID

OG0009973

Physical Location & Seq

Genomic Coordinates Forward (+)

6849 .. 9292

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027506.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

atgtcgatatctgaacttggattgtttgaagcattgacaatgtcaacgtcatacctcccagcaacaacggattcaattgctctggctttggaggccaaagctccatctgaagccatagctattctgtatcgtattcttgaaaacccatccacttcttccgaagctctacgcataaaggaacagaccatcaccaatctgtctgatcttcttagacaagagaatcggggagaagatcttcgtaaccttcttacccagttgaggcctttctttagcttgattccaaaggcaaaaactgcaaagattgttcgtggcataatagatacagtagctaaaatacccggcacatctgaacttcagatttccctttgcaaagacatggtgcagtggactcgtgctgagaagcgaactttccttcggcagcgagtggaggccaggcttgcagctcttttgttggaaagcaaggagtactcagaagcactaactctcctctctaccttgatcaaagaagtgagaaggctagatgacaagcttctccttgtggacatagatctgttggagagtaagcttcacttttctttgagaaatctccctaaagccaaggcttcactgactgcagctagaacagcagccaattctatctatgtgcctccagctcaacagggaactattgatttgcagagtggcatccttcatgcagaagaaaaagactacaaaactgcttacagttatttctttgaagcatttgaagccttcaatgctcttgaggatcctcgggctgtctttagcctcaagtatatgttgttgtgcaaaatcatggtgagccaggctgatgatgtggcaggaattatatcatccaaagcaggattgcagtacgttgggcctgagcttgatgccatgaaggcagtggctgatgctcactcgaagcgctctttaaagctttttgagactgctttgcgggattataaggcgcagctagaggaagaccctattgtccacaggcacctgtcttccctgtatgacactctgttagaacagaatctctgcaggttgattgagcctttctcaagggtggaaatagctcatattgcagaactgattgaactccctgttgaccacgtggagaagaagctgtctcaaatgattcttgataagaaatttgcaggaactttggatcagggtgctggctgcctcatcatttttgaggatctcaagaccgacgccatataccctgctacgctagaaaccatatccaacatgggtaaggttgttgatagcctctatgtgaggtctgccaagataatggcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030054 GO:0030154 GO:0030163 GO:0032502 GO:0032991 GO:0034622 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048863 GO:0048869 GO:0050896 GO:0051603 GO:0055044 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

435

Amino Acids

48.57

Weight (kDa)

5.81

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29150 AT1G29150
fragaria_vesca	FvH4_4g30750
malus_domestica	MD13G1068400.v1.1 MD16G1067200.v1.1
prunus_persica	Prupe.1G279500_v2.0.a1
pyrus_communis	pycom13g06020
rosa_chinensis	RchiOBHm_Chr4g0439141 RchiOBHm_Chr6g0255431
rosa_laevigata	RLG00000006294
rosa_multiflora	Rmu_sc0002236.1_g000002 Rmu_sc0027506.1_g000003
rosa_roxburghii	Rroxscaffold_5G00380130
rosa_rugosa	Rorug04G0316000
rosa_samantha	Rh4AG366900 Rh4BG378400 Rh4CG392700 Rh4DG373000
rosa_wichuraiana	Rw0G007510 Rw0G011720 Rw6G006640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	963
AasI	GACNNNNNNGTC	1 cut(s)	989
Acc36I	ACCTGC	1 cut(s)	1035
AccB1I	GGYRCC	1 cut(s)	999
AciI	CCGC	1 cut(s)	955
AclWI	GGATC	4 cut(s)	761, 774, 1179, 1212
AcsI	RAATTY	1 cut(s)	1154
AcuI	CTGAAG	2 cut(s)	129, 338
AcvI	CACGTG	1 cut(s)	1117
AcyI	GRCGYC	1 cut(s)	1218
AfaI	GTAC	2 cut(s)	467, 872
AfeI	AGCGCT	1 cut(s)	926
AfiI	CCNNNNNNNGG	1 cut(s)	258
AgsI	TTSAA	7 cut(s)	29, 75, 140, 737, 746, 754, 1100
AjnI	CCWGG	2 cut(s)	431, 822
Alw26I	GTCTC	2 cut(s)	938, 1137
AlwI	GGATC	4 cut(s)	761, 774, 1179, 1212
AlwNI	CAGNNNCTG	1 cut(s)	908
Ama87I	CYCGRG	1 cut(s)	771
Aor51HI	AGCGCT	1 cut(s)	926
AoxI	GGCC	4 cut(s)	93, 260, 429, 878
ApeKI	GCWGC	6 cut(s)	418, 440, 614, 626, 970, 1185
ApoI	RAATTY	1 cut(s)	1154
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	2 cut(s)	927, 970
AspS9I	GGNCC	1 cut(s)	878
AsuC2I	CCSGG	1 cut(s)	339
AsuHPI	GGTGA	2 cut(s)	181, 829
AvaI	CYCGRG	1 cut(s)	771
BamHI	GGATCC	1 cut(s)	766
BanI	GGYRCC	1 cut(s)	999
BauI	CACGAG	1 cut(s)	390
BbrPI	CACGTG	1 cut(s)	1117
BbsI	GAAGAC	2 cut(s)	987, 999
BbvI	GCAGC	6 cut(s)	430, 452, 626, 638, 982, 1172
BccI	CCATC	3 cut(s)	112, 154, 194
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BciT130I	CCWGG	2 cut(s)	433, 824
BclI	TGATCA	1 cut(s)	498
BcnI	CCSGG	1 cut(s)	339
BcoDI	GTCTC	2 cut(s)	938, 1137
BfaI	CTAG	4 cut(s)	518, 618, 974, 1238
BfmI	CTRYAG	2 cut(s)	612, 1042
BfoI	RGCGCY	1 cut(s)	928
BfuAI	ACCTGC	1 cut(s)	1035
BglI	GCCNNNNNGGC	1 cut(s)	899
BglII	AGATCT	2 cut(s)	232, 547
BisI	GCNGC	6 cut(s)	419, 441, 615, 627, 971, 1186
BlsI	GCNGC	6 cut(s)	420, 442, 616, 628, 972, 1187
BmcAI	AGTACT	1 cut(s)	467
Bme1390I	CCNGG	3 cut(s)	339, 433, 824
BmeT110I	CYCGRG	1 cut(s)	771
BmgT120I	GGNCC	1 cut(s)	878
BmiI	GGNNCC	2 cut(s)	768, 1001
BmrFI	CCNGG	3 cut(s)	339, 433, 824
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	3 cut(s)	693, 880, 901
BmuI	ACTGGG	1 cut(s)	247
BpiI	GAAGAC	2 cut(s)	987, 999
BplI	GAGNNNNNCTC	2 cut(s)	1046, 1078
BpmI	CTGGAG	1 cut(s)	633
Bpu10I	CCTNAGC	1 cut(s)	882
BpuEI	CTTGAG	4 cut(s)	773, 782, 1048, 1193
BpuMI	CCSGG	1 cut(s)	339
BsaAI	YACGTR	1 cut(s)	1117
BsaHI	GRCGYC	1 cut(s)	1218
BsaJI	CCNNGG	2 cut(s)	597, 770
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	253
BseBI	CCWGG	2 cut(s)	433, 824
BseDI	CCNNGG	2 cut(s)	597, 770
BseGI	GGATG	3 cut(s)	146, 684, 851
BseLI	CCNNNNNNNGG	1 cut(s)	258
BseMII	CTCAG	3 cut(s)	387, 483, 873
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	6 cut(s)	430, 452, 626, 638, 982, 1172
BseYI	CCCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	401
BshFI	GGCC	4 cut(s)	95, 262, 431, 880
BshNI	GGYRCC	1 cut(s)	999
BsiHKCI	CYCGRG	1 cut(s)	771
BsiSI	CCGG	1 cut(s)	339
BslI	CCNNNNNNNGG	1 cut(s)	258
BsmAI	GTCTC	2 cut(s)	938, 1137
BsnI	GGCC	4 cut(s)	95, 262, 431, 880
BsoBI	CYCGRG	1 cut(s)	771
Bsp143I	GATC	7 cut(s)	202, 232, 498, 547, 766, 1171, 1204
BspACI	CCGC	1 cut(s)	955
BspANI	GGCC	4 cut(s)	95, 262, 431, 880
BspCNI	CTCAG	3 cut(s)	388, 482, 874
BspLI	GGNNCC	2 cut(s)	768, 1001
BspMAI	CTGCAG	2 cut(s)	616, 1046
BspMI	ACCTGC	1 cut(s)	1035
BspPI	GGATC	4 cut(s)	761, 774, 1179, 1212
BspT107I	GGYRCC	1 cut(s)	999
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	2 cut(s)	597, 770
BssMI	GATC	7 cut(s)	202, 232, 498, 547, 766, 1171, 1204
BssNI	GRCGYC	1 cut(s)	1218
BssSI	CACGAG	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	597
Bst2BI	CACGAG	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	433, 824
Bst4CI	ACNGT	2 cut(s)	325, 725
BstACI	GRCGYC	1 cut(s)	1218
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	1117
BstC8I	GCNNGC	2 cut(s)	438, 1183
BstDEI	CTNAG	4 cut(s)	209, 396, 469, 882
BstF5I	GGATG	3 cut(s)	146, 684, 851
BstH2I	RGCGCY	1 cut(s)	928
BstHHI	GCGC	2 cut(s)	927, 970
BstKTI	GATC	7 cut(s)	205, 235, 501, 550, 769, 1174, 1207
BstMAI	GTCTC	2 cut(s)	938, 1137
BstMBI	GATC	7 cut(s)	202, 232, 498, 547, 766, 1171, 1204
BstMWI	GCNNNNNNNGC	8 cut(s)	92, 293, 437, 623, 746, 755, 899, 1085
BstNI	CCWGG	2 cut(s)	433, 824
BstSCI	CCNGG	3 cut(s)	337, 431, 822
BstSFI	CTRYAG	2 cut(s)	612, 1042
BstV1I	GCAGC	6 cut(s)	430, 452, 626, 638, 982, 1172
BstV2I	GAAGAC	2 cut(s)	987, 999
BstX2I	RGATCY	4 cut(s)	232, 547, 766, 1204
BstXI	CCANNNNNNTGG	1 cut(s)	1300
BstYI	RGATCY	4 cut(s)	232, 547, 766, 1204
BsuRI	GGCC	4 cut(s)	95, 262, 431, 880
BtsCI	GGATG	3 cut(s)	146, 684, 851
BtsI	GCAGTG	2 cut(s)	389, 909
BtsIMutI	CAGTG	3 cut(s)	389, 605, 909
BveI	ACCTGC	1 cut(s)	1035
Cac8I	GCNNGC	2 cut(s)	438, 1183
CaiI	CAGNNNCTG	1 cut(s)	908
CfoI	GCGC	2 cut(s)	927, 970
Cfr13I	GGNCC	1 cut(s)	878
CseI	GACGC	1 cut(s)	1226
Csp6I	GTAC	2 cut(s)	466, 871
CviAII	CATG	6 cut(s)	376, 692, 814, 895, 1255, 1305
CviQI	GTAC	2 cut(s)	466, 871
DdeI	CTNAG	4 cut(s)	209, 396, 469, 882
DpnI	GATC	7 cut(s)	204, 234, 500, 549, 768, 1173, 1206
DpnII	GATC	7 cut(s)	202, 232, 498, 547, 766, 1171, 1204
DraI	TTTAAA	1 cut(s)	933
DrdI	GACNNNNNNGTC	1 cut(s)	989
DseDI	GACNNNNNNGTC	1 cut(s)	989
Eco130I	CCWWGG	1 cut(s)	597
Eco147I	AGGCCT	1 cut(s)	262
Eco32I	GATATC	1 cut(s)	9
Eco47III	AGCGCT	1 cut(s)	926
Eco57I	CTGAAG	2 cut(s)	129, 338
Eco72I	CACGTG	1 cut(s)	1117
Eco88I	CYCGRG	1 cut(s)	771
EcoRII	CCWGG	2 cut(s)	431, 822
EcoRV	GATATC	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	6 cut(s)	379, 695, 817, 898, 1258, 1308
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FatI	CATG	6 cut(s)	375, 691, 813, 894, 1254, 1304
FauI	CCCGC	1 cut(s)	948
FbaI	TGATCA	1 cut(s)	498
Fnu4HI	GCNGC	6 cut(s)	419, 441, 615, 627, 971, 1186
FokI	GGATG	3 cut(s)	133, 671, 838
Fsp4HI	GCNGC	6 cut(s)	419, 441, 615, 627, 971, 1186
FspBI	CTAG	4 cut(s)	518, 618, 974, 1238
GlaI	GCGC	2 cut(s)	926, 969
GluI	GCNGC	6 cut(s)	419, 441, 615, 627, 971, 1186
GsaI	CCCAGC	1 cut(s)	62
GsuI	CTGGAG	1 cut(s)	633
HaeII	RGCGCY	1 cut(s)	928
HaeIII	GGCC	4 cut(s)	95, 262, 431, 880
HapII	CCGG	1 cut(s)	339
HgaI	GACGC	1 cut(s)	1226
HhaI	GCGC	2 cut(s)	927, 970
Hin1I	GRCGYC	1 cut(s)	1218
Hin1II	CATG	6 cut(s)	379, 695, 817, 898, 1258, 1308
Hin6I	GCGC	2 cut(s)	925, 968
HinP1I	GCGC	2 cut(s)	925, 968
HincII	GTYRAC	2 cut(s)	45, 1111
HindII	GTYRAC	2 cut(s)	45, 1111
HindIII	AAGCTT	3 cut(s)	527, 563, 935
HinfI	GANTC	6 cut(s)	71, 220, 277, 388, 1036, 1141
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	2 cut(s)	181, 829
Hpy166II	GTNNAC	5 cut(s)	45, 387, 541, 994, 1111
Hpy188I	TCNGA	7 cut(s)	13, 109, 160, 202, 349, 357, 472
Hpy188III	TCNNGA	4 cut(s)	137, 761, 1145, 1210
Hpy8I	GTNNAC	5 cut(s)	45, 387, 541, 994, 1111
Hpy99I	CGWCG	1 cut(s)	1220
HpyAV	CCTTC	6 cut(s)	254, 422, 507, 698, 760, 892
HpyCH4III	ACNGT	2 cut(s)	325, 725
HpyCH4IV	ACGT	3 cut(s)	47, 873, 1116
HpyF10VI	GCNNNNNNNGC	8 cut(s)	92, 293, 437, 623, 746, 755, 899, 1085
HpyF3I	CTNAG	4 cut(s)	209, 396, 469, 882
HpySE526I	ACGT	3 cut(s)	47, 873, 1116
Hsp92I	GRCGYC	1 cut(s)	1218
Hsp92II	CATG	6 cut(s)	379, 695, 817, 898, 1258, 1308
HspAI	GCGC	2 cut(s)	925, 968
Ksp22I	TGATCA	1 cut(s)	498
Kzo9I	GATC	7 cut(s)	202, 232, 498, 547, 766, 1171, 1204
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	6 cut(s)	430, 452, 626, 638, 982, 1172
LweI	GCATC	3 cut(s)	693, 880, 901
MaeI	CTAG	4 cut(s)	518, 618, 974, 1238
MaeII	ACGT	3 cut(s)	47, 873, 1116
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	7 cut(s)	204, 234, 500, 549, 768, 1173, 1206
MboI	GATC	7 cut(s)	202, 232, 498, 547, 766, 1171, 1204
MboII	GAAGA	8 cut(s)	147, 197, 227, 242, 710, 992, 999, 1135
MfeI	CAATTG	1 cut(s)	75
MflI	RGATCY	4 cut(s)	232, 547, 766, 1204
MluCI	AATT	4 cut(s)	75, 631, 843, 1154
MlyI	GAGTC	1 cut(s)	382
MmeI	TCCRAC	3 cut(s)	432, 534, 1275
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	1 cut(s)	932
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	3 cut(s)	339, 433, 824
MunI	CAATTG	1 cut(s)	75
MvaI	CCWGG	2 cut(s)	433, 824
MwoI	GCNNNNNNNGC	8 cut(s)	92, 293, 437, 623, 746, 755, 899, 1085
NciI	CCSGG	1 cut(s)	339
NdeII	GATC	7 cut(s)	202, 232, 498, 547, 766, 1171, 1204
NlaIII	CATG	6 cut(s)	379, 695, 817, 898, 1258, 1308
NlaIV	GGNNCC	2 cut(s)	768, 1001
PceI	AGGCCT	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	5 cut(s)	71, 220, 277, 1036, 1141
PflFI	GACNNNGTC	1 cut(s)	40
PkrI	GCNGC	6 cut(s)	420, 442, 616, 628, 972, 1187
PleI	GAGTC	1 cut(s)	382
PmaCI	CACGTG	1 cut(s)	1117
PmlI	CACGTG	1 cut(s)	1117
PpsI	GAGTC	1 cut(s)	382
Ppu21I	YACGTR	1 cut(s)	1117
PsiI	TTATAA	1 cut(s)	963
Psp6I	CCWGG	2 cut(s)	431, 822
PspCI	CACGTG	1 cut(s)	1117
PspFI	CCCAGC	1 cut(s)	58
PspGI	CCWGG	2 cut(s)	431, 822
PspN4I	GGNNCC	2 cut(s)	768, 1001
PspPI	GGNCC	1 cut(s)	878
PstI	CTGCAG	2 cut(s)	616, 1046
PstNI	CAGNNNCTG	1 cut(s)	908
PsuI	RGATCY	4 cut(s)	232, 547, 766, 1204
PsyI	GACNNNGTC	1 cut(s)	40
RsaI	GTAC	2 cut(s)	467, 872
RsaNI	GTAC	2 cut(s)	466, 871
SaqAI	TTAA	1 cut(s)	932
SatI	GCNGC	6 cut(s)	419, 441, 615, 627, 971, 1186
Sau3AI	GATC	7 cut(s)	202, 232, 498, 547, 766, 1171, 1204
Sau96I	GGNCC	1 cut(s)	878
ScaI	AGTACT	1 cut(s)	467
SchI	GAGTC	1 cut(s)	382
ScrFI	CCNGG	3 cut(s)	339, 433, 824
SfaNI	GCATC	3 cut(s)	693, 880, 901
SfcI	CTRYAG	2 cut(s)	612, 1042
SmlI	CTYRAG	4 cut(s)	761, 788, 1063, 1208
SmoI	CTYRAG	4 cut(s)	761, 788, 1063, 1208
Sse9I	AATT	4 cut(s)	75, 631, 843, 1154
SseBI	AGGCCT	1 cut(s)	262
SsiI	CCGC	1 cut(s)	955
SspMI	CTAG	4 cut(s)	518, 618, 974, 1238
StuI	AGGCCT	1 cut(s)	262
StyD4I	CCNGG	3 cut(s)	337, 431, 822
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	2 cut(s)	325, 725
TaiI	ACGT	3 cut(s)	50, 876, 1119
TaqI	TCGA	2 cut(s)	5, 920
TaqII	GACCGA	1 cut(s)	1229
TasI	AATT	4 cut(s)	75, 631, 843, 1154
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	5 cut(s)	71, 220, 277, 1036, 1141
Tru1I	TTAA	1 cut(s)	932
Tru9I	TTAA	1 cut(s)	932
TscAI	CASTG	3 cut(s)	389, 612, 909
TseI	GCWGC	6 cut(s)	418, 440, 614, 626, 970, 1185
TspDTI	ATGAA	2 cut(s)	680, 911
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	3 cut(s)	389, 612, 909
Tth111I	GACNNNGTC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	1154
XcmI	CCANNNNNNNNNTGG	2 cut(s)	901, 1252
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	4 cut(s)	518, 618, 974, 1238
ZrmI	AGTACT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.