Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009973

Physical Location & Seq

Genomic Coordinates Forward (+)

4704851 .. 4707668

Gene Structure 2818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1068400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGTCTTCGTCATATCTCCCAGCAACTACTGATTCGATTGCTCAGGCTTCAGAGGCCAAAACTCCATCTGAATCCATCTCTATTCTTTATCGCATTCTTGAAAACCCATCAGCATCTTCTGAAGCTATACGGATAAAGGAGCAGGCTATCACAAATCTTTCGGATCTTCTTAGACAAGAACATAGGGCAGAAGATCTCCGTAACCTTCTCACCCAGTTGAGGCCTTTCTTTAACTTGATTCCCAAGGCGAAAACTGCAAAAATTGTCCGCATTATTATTGATGCAGTAGCTAAGATACCAAACACGTCTGAACTTCAGATTTCCCTTTGCAAAGAAATGGTGCAGTGGACCCGTGCTGAGAAGCGAACTTTCCTTCGACAGCGAGTGGAGGCCAGGCTTGCATCTCTTTTGATGGAAAGCAAGGAGTACTCGGAAGCACTAACTCTCCTATCAGACTTGATCAAGGAAGTGAGAAGGCTAGATGACAAGCTTCTCCTTGTGGACATAGATTTGTTGGAGAGTAAACTTCACTTTTCTTTGAGAAATCTCCCTAAAGCCAAGGCTTCGCTCACAGCTGCAAGAACAGCAGCCAATTCCATATATGTGCCTCCAGCTCAGCAGGGAACTATTGATTTGCAGAGTGGGATCCTTCACGCAGAAGAGAAGGACTACAAGACTGCTTACAGTTATTTCTTTGAAGCATTTGAAGCTTTCAATGCTCTTGAAGATCCTCGTGCTGTATTTAGCCTCAAGTACATGTTGCTGTGCAAAATTATGGTGAGCCAGGCTGATGATGTGGCAGGTATAATTTCATCAAAAGCAGGCCTGCAGTACGTGGGACCTGAGCTGGATGCTATGAAAGCGGTTGCTGATGCTCACTCGAAGCGTTCTTTGAAGCTTTTTGAGACTGCTCTTGGTGATTTCAAGGCCCAATTAGAGGAAGACCCTATTGTCCACAGGCACCTCTCCTCCCTGTATGACACACTGTTGGAACAGAATCTCTGCAGGTTGATCGAGCCTTTCTCAAGGGTGGAGATTGCTCACATTGCAGAACTGATTGAACTGCCAATCGATCACGTGGAAAAGAAACTGTCTCAAATGATCCTGGACAAGAAGTTTGCAGGGACATTAGATCAGGGTGCTGGAAGCCTCATCATTTTCGACGATCCCAAGACAGATGCAATCTACCCTGCAACGTTGGAGACCATATCTAATATCGGCAAGGTCGTGGACAGCCTCTACGTGAGGTCTGCGAAGATAATGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030054 GO:0030154 GO:0030163 GO:0032502 GO:0032991 GO:0034622 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048863 GO:0048869 GO:0050896 GO:0051603 GO:0055044 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

423

Amino Acids

47.19

Weight (kDa)

5.87

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN6_N	PF18055	14 - 128	6.2e-35	26S proteasome regulatory subunit RPN6 N-terminal domain
PCI	PF01399	306 - 386	4.6e-19	PCI domain
RPN6_C_helix	PF18503	393 - 418	1.4e-11	26S proteasome subunit RPN6 C-terminal helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29150 AT1G29150
fragaria_vesca	FvH4_4g30750
malus_domestica	MD13G1068400.v1.1 MD16G1067200.v1.1
prunus_persica	Prupe.1G279500_v2.0.a1
pyrus_communis	pycom13g06020
rosa_chinensis	RchiOBHm_Chr4g0439141 RchiOBHm_Chr6g0255431
rosa_laevigata	RLG00000006294
rosa_multiflora	Rmu_sc0002236.1_g000002 Rmu_sc0027506.1_g000003
rosa_roxburghii	Rroxscaffold_5G00380130
rosa_rugosa	Rorug04G0316000
rosa_samantha	Rh4AG366900 Rh4BG378400 Rh4CG392700 Rh4DG373000
rosa_wichuraiana	Rw0G007510 Rw0G011720 Rw6G006640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	950
Acc36I	ACCTGC	2 cut(s)	791, 996
AccB1I	GGYRCC	1 cut(s)	960
AciI	CCGC	2 cut(s)	268, 863
AclI	AACGTT	1 cut(s)	1196
AclWI	GGATC	6 cut(s)	171, 640, 653, 722, 1096, 1160
AcuI	CTGAAG	3 cut(s)	33, 141, 299
AcvI	CACGTG	1 cut(s)	1078
AfaI	GTAC	3 cut(s)	428, 755, 833
AfiI	CCNNNNNNNGG	2 cut(s)	219, 937
AflIII	ACRYGT	2 cut(s)	303, 756
AgsI	TTSAA	8 cut(s)	101, 698, 707, 715, 725, 895, 925, 1061
AjiI	CACGTC	1 cut(s)	306
AjnI	CCWGG	3 cut(s)	392, 783, 1104
AluBI	AGCT	8 cut(s)	125, 290, 490, 575, 614, 710, 847, 898
AluI	AGCT	8 cut(s)	125, 290, 490, 575, 614, 710, 847, 898
Alw26I	GTCTC	3 cut(s)	899, 1098, 1196
AlwI	GGATC	6 cut(s)	171, 640, 653, 722, 1096, 1160
AoxI	GGCC	5 cut(s)	54, 221, 390, 823, 927
ApeKI	GCWGC	2 cut(s)	575, 587
ArsI	GACNNNNNNTTYG	2 cut(s)	1100, 1132
AspS9I	GGNCC	3 cut(s)	348, 839, 928
AsuHPI	GGTGA	3 cut(s)	202, 790, 929
AvaII	GGWCC	2 cut(s)	348, 839
BamHI	GGATCC	1 cut(s)	645
BanI	GGYRCC	1 cut(s)	960
BauI	CACGAG	1 cut(s)	732
BbrPI	CACGTG	1 cut(s)	1078
BbsI	GAAGAC	1 cut(s)	948
BbvI	GCAGC	2 cut(s)	562, 599
BccI	CCATC	4 cut(s)	73, 83, 115, 406
BcgI	CGANNNNNNTGC	2 cut(s)	994, 1028
BciT130I	CCWGG	3 cut(s)	394, 785, 1106
BclI	TGATCA	1 cut(s)	459
BcoDI	GTCTC	3 cut(s)	899, 1098, 1196
BfaI	CTAG	1 cut(s)	479
BfmI	CTRYAG	2 cut(s)	827, 1003
BfuAI	ACCTGC	2 cut(s)	791, 996
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	2 cut(s)	576, 588
BlpI	GCTNAGC	1 cut(s)	615
BlsI	GCNGC	2 cut(s)	577, 589
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	3 cut(s)	394, 785, 1106
Bme18I	GGWCC	2 cut(s)	348, 839
BmgBI	CACGTC	1 cut(s)	306
BmgT120I	GGNCC	3 cut(s)	348, 839, 928
BmiI	GGNNCC	4 cut(s)	350, 647, 840, 962
BmrFI	CCNGG	3 cut(s)	394, 785, 1106
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	6 cut(s)	122, 271, 410, 841, 862, 1168
BmuI	ACTGGG	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	948
BplI	GAGNNNNNCTC	2 cut(s)	1007, 1039
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	2 cut(s)	42, 843
Bpu1102I	GCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	2 cut(s)	734, 1009
Bsa29I	ATCGAT	1 cut(s)	1071
BsaAI	YACGTR	3 cut(s)	835, 1078, 1243
BsaI	GGTCTC	1 cut(s)	1196
BsaJI	CCNNGG	2 cut(s)	243, 558
BsaXI	ACNNNNNCTCC	4 cut(s)	429, 459, 953, 983
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 937
Bse1I	ACTGG	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	1044
BseBI	CCWGG	3 cut(s)	394, 785, 1106
BseCI	ATCGAT	1 cut(s)	1071
BseDI	CCNNGG	2 cut(s)	243, 558
BseGI	GGATG	1 cut(s)	856
BseLI	CCNNNNNNNGG	2 cut(s)	219, 937
BseMI	GCAATG	1 cut(s)	1044
BseMII	CTCAG	4 cut(s)	56, 348, 629, 834
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	958
BseXI	GCAGC	2 cut(s)	562, 599
BseYI	CCCAGC	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	362
BshFI	GGCC	5 cut(s)	56, 223, 392, 825, 929
BshNI	GGYRCC	1 cut(s)	960
BshVI	ATCGAT	1 cut(s)	1071
BslFI	GGGAC	2 cut(s)	852, 1138
BslI	CCNNNNNNNGG	2 cut(s)	219, 937
BsmAI	GTCTC	3 cut(s)	899, 1098, 1196
BsmFI	GGGAC	2 cut(s)	852, 1138
BsmI	GAATGC	1 cut(s)	93
BsnI	GGCC	5 cut(s)	56, 223, 392, 825, 929
Bso31I	GGTCTC	1 cut(s)	1196
Bsp1720I	GCTNAGC	1 cut(s)	615
BspACI	CCGC	2 cut(s)	268, 863
BspANI	GGCC	5 cut(s)	56, 223, 392, 825, 929
BspCNI	CTCAG	4 cut(s)	55, 349, 628, 835
BspDI	ATCGAT	1 cut(s)	1071
BspLI	GGNNCC	4 cut(s)	350, 647, 840, 962
BspMAI	CTGCAG	2 cut(s)	831, 1007
BspMI	ACCTGC	2 cut(s)	791, 996
BspPI	GGATC	6 cut(s)	171, 640, 653, 722, 1096, 1160
BspT107I	GGYRCC	1 cut(s)	960
BspTNI	GGTCTC	1 cut(s)	1196
BsrDI	GCAATG	1 cut(s)	1044
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	243, 558
BssSI	CACGAG	1 cut(s)	732
BssT1I	CCWWGG	2 cut(s)	243, 558
Bst2BI	CACGAG	1 cut(s)	732
Bst2UI	CCWGG	3 cut(s)	394, 785, 1106
Bst4CI	ACNGT	3 cut(s)	686, 987, 1092
Bst6I	CTCTTC	1 cut(s)	654
BstBAI	YACGTR	3 cut(s)	835, 1078, 1243
BstC8I	GCNNGC	4 cut(s)	144, 399, 823, 827
BstDEI	CTNAG	6 cut(s)	42, 170, 291, 357, 615, 843
BstF5I	GGATG	1 cut(s)	856
BstMAI	GTCTC	3 cut(s)	899, 1098, 1196
BstMWI	GCNNNNNNNGC	8 cut(s)	53, 254, 398, 584, 707, 716, 860, 1046
BstNI	CCWGG	3 cut(s)	394, 785, 1106
BstNSI	RCATGY	1 cut(s)	760
BstSCI	CCNGG	3 cut(s)	392, 783, 1104
BstSFI	CTRYAG	2 cut(s)	827, 1003
BstV1I	GCAGC	2 cut(s)	562, 599
BstV2I	GAAGAC	1 cut(s)	948
BstX2I	RGATCY	4 cut(s)	163, 193, 645, 727
BstYI	RGATCY	4 cut(s)	163, 193, 645, 727
Bsu15I	ATCGAT	1 cut(s)	1071
BsuRI	GGCC	5 cut(s)	56, 223, 392, 825, 929
BsuTUI	ATCGAT	1 cut(s)	1071
BtrI	CACGTC	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	856
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	2 cut(s)	350, 983
BveI	ACCTGC	2 cut(s)	791, 996
Cac8I	GCNNGC	4 cut(s)	144, 399, 823, 827
Cfr13I	GGNCC	3 cut(s)	348, 839, 928
ClaI	ATCGAT	1 cut(s)	1071
Csp6I	GTAC	3 cut(s)	427, 754, 832
CviAII	CATG	1 cut(s)	757
CviQI	GTAC	3 cut(s)	427, 754, 832
DdeI	CTNAG	6 cut(s)	42, 170, 291, 357, 615, 843
DrdI	GACNNNNNNGTC	1 cut(s)	950
DseDI	GACNNNNNNGTC	1 cut(s)	950
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
Eco130I	CCWWGG	2 cut(s)	243, 558
Eco147I	AGGCCT	2 cut(s)	223, 825
Eco31I	GGTCTC	1 cut(s)	1196
Eco47I	GGWCC	2 cut(s)	348, 839
Eco57I	CTGAAG	3 cut(s)	33, 141, 299
Eco72I	CACGTG	1 cut(s)	1078
EcoO109I	RGGNCCY	1 cut(s)	839
EcoRII	CCWGG	3 cut(s)	392, 783, 1104
EcoT14I	CCWWGG	2 cut(s)	243, 558
ErhI	CCWWGG	2 cut(s)	243, 558
FaeI	CATG	1 cut(s)	760
FaqI	GGGAC	2 cut(s)	852, 1138
FatI	CATG	1 cut(s)	756
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	576, 588
FokI	GGATG	1 cut(s)	863
Fsp4HI	GCNGC	2 cut(s)	576, 588
FspBI	CTAG	1 cut(s)	479
GluI	GCNGC	2 cut(s)	576, 588
GsaI	CCCAGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	5 cut(s)	56, 223, 392, 825, 929
Hin1II	CATG	1 cut(s)	760
HindIII	AAGCTT	3 cut(s)	488, 708, 896
HinfI	GANTC	4 cut(s)	32, 71, 238, 997
HphI	GGTGA	3 cut(s)	202, 790, 929
Hpy166II	GTNNAC	5 cut(s)	348, 502, 524, 955, 1231
Hpy188I	TCNGA	8 cut(s)	52, 70, 121, 163, 310, 318, 433, 454
Hpy188III	TCNNGA	2 cut(s)	98, 722
Hpy8I	GTNNAC	5 cut(s)	348, 502, 524, 955, 1231
Hpy99I	CGWCG	1 cut(s)	1166
HpyAV	CCTTC	5 cut(s)	215, 383, 468, 658, 659
HpyCH4III	ACNGT	3 cut(s)	686, 987, 1092
HpyCH4IV	ACGT	5 cut(s)	305, 834, 1077, 1196, 1242
HpyF10VI	GCNNNNNNNGC	8 cut(s)	53, 254, 398, 584, 707, 716, 860, 1046
HpyF3I	CTNAG	6 cut(s)	42, 170, 291, 357, 615, 843
HpySE526I	ACGT	5 cut(s)	305, 834, 1077, 1196, 1242
Hsp92II	CATG	1 cut(s)	760
Ksp22I	TGATCA	1 cut(s)	459
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	2 cut(s)	562, 599
LweI	GCATC	6 cut(s)	122, 271, 410, 841, 862, 1168
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	5 cut(s)	305, 834, 1077, 1196, 1242
MaeIII	GTNAC	1 cut(s)	200
MboII	GAAGA	7 cut(s)	108, 158, 203, 671, 737, 953, 1267
MflI	RGATCY	4 cut(s)	163, 193, 645, 727
MluCI	AATT	5 cut(s)	261, 592, 771, 807, 932
MmeI	TCCRAC	3 cut(s)	495, 969, 1179
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	602
MspA1I	CMGCKG	1 cut(s)	575
MspR9I	CCNGG	3 cut(s)	394, 785, 1106
Mva1269I	GAATGC	1 cut(s)	93
MvaI	CCWGG	3 cut(s)	394, 785, 1106
MwoI	GCNNNNNNNGC	8 cut(s)	53, 254, 398, 584, 707, 716, 860, 1046
NlaIII	CATG	1 cut(s)	760
NlaIV	GGNNCC	4 cut(s)	350, 647, 840, 962
NspI	RCATGY	1 cut(s)	760
PceI	AGGCCT	2 cut(s)	223, 825
PciI	ACATGT	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	1 cut(s)	1224
PctI	GAATGC	1 cut(s)	93
PfeI	GAWTC	4 cut(s)	32, 71, 238, 997
PfoI	TCCNGGA	1 cut(s)	1104
PkrI	GCNGC	2 cut(s)	577, 589
PmaCI	CACGTG	1 cut(s)	1078
PmlI	CACGTG	1 cut(s)	1078
Ppu21I	YACGTR	3 cut(s)	835, 1078, 1243
PpuMI	RGGWCCY	1 cut(s)	839
PscI	ACATGT	1 cut(s)	756
Psp1406I	AACGTT	1 cut(s)	1196
Psp5II	RGGWCCY	1 cut(s)	839
Psp6I	CCWGG	3 cut(s)	392, 783, 1104
PspCI	CACGTG	1 cut(s)	1078
PspFI	CCCAGC	1 cut(s)	19
PspGI	CCWGG	3 cut(s)	392, 783, 1104
PspN4I	GGNNCC	4 cut(s)	350, 647, 840, 962
PspPI	GGNCC	3 cut(s)	348, 839, 928
PspPPI	RGGWCCY	1 cut(s)	839
PstI	CTGCAG	2 cut(s)	831, 1007
PsuI	RGATCY	4 cut(s)	163, 193, 645, 727
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	3 cut(s)	428, 755, 833
RsaNI	GTAC	3 cut(s)	427, 754, 832
RseI	CAYNNNNRTG	1 cut(s)	602
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	2 cut(s)	576, 588
Sau96I	GGNCC	3 cut(s)	348, 839, 928
ScaI	AGTACT	1 cut(s)	428
ScrFI	CCNGG	3 cut(s)	394, 785, 1106
SfaNI	GCATC	6 cut(s)	122, 271, 410, 841, 862, 1168
SfcI	CTRYAG	2 cut(s)	827, 1003
SinI	GGWCC	2 cut(s)	348, 839
SmiMI	CAYNNNNRTG	1 cut(s)	602
SmlI	CTYRAG	2 cut(s)	749, 1024
SmoI	CTYRAG	2 cut(s)	749, 1024
Sse9I	AATT	5 cut(s)	261, 592, 771, 807, 932
SseBI	AGGCCT	2 cut(s)	223, 825
SsiI	CCGC	2 cut(s)	268, 863
SspMI	CTAG	1 cut(s)	479
StuI	AGGCCT	2 cut(s)	223, 825
StyD4I	CCNGG	3 cut(s)	392, 783, 1104
StyI	CCWWGG	2 cut(s)	243, 558
TaaI	ACNGT	3 cut(s)	686, 987, 1092
TaiI	ACGT	5 cut(s)	308, 837, 1080, 1199, 1245
TaqI	TCGA	6 cut(s)	35, 376, 881, 1014, 1071, 1161
TasI	AATT	5 cut(s)	261, 592, 771, 807, 932
TatI	WGTACW	2 cut(s)	426, 753
TfiI	GAWTC	4 cut(s)	32, 71, 238, 997
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	2 cut(s)	350, 990
TseI	GCWGC	2 cut(s)	575, 587
TspDTI	ATGAA	2 cut(s)	801, 872
TspGWI	ACGGA	2 cut(s)	145, 188
TspRI	CASTG	2 cut(s)	350, 990
VpaK11BI	GGWCC	2 cut(s)	348, 839
XceI	RCATGY	1 cut(s)	760
XspI	CTAG	1 cut(s)	479
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.