Rmu_sc0002236.1_g000002

26S proteasome non-atpase regulatory subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002236.1
Physical Location & Seq
Forward (+)
1979 .. 4441
2463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002236.1_g000002.1.cds

Sequence Viewer

Length: 1431 bp
atgggctattacttaaggagttggcacctcacaaatcgactcttcttctcttttctctgtgcgcatcacaaccgacccttctctctctccgcacgtcatcgtcttcactcttgcttccagctcgagtcgatatctgaacttggattgtttgaagcattgacaatgtcaacgtcatacctcccagcaacaacggattcaattgctctggctttggaggccaaagctccatctgaagccatagctattctgtatcgtattcttgaaaacccatccacttcttccgaagctctacgcataaaggaacagaccatcaccaatctgtcagatcttcttagacaagagaatcggggagaagatcttcgtaaccttcttacccagttgaggcctttctttagcttgattccaaaggcaaaaactgcaaagattgttcgtggcataatagatacagtagctaaaatacccggcacatctgaacttcagatttccctttgcaaagacatggtgcagtggactcgtgctgagaagcgaactttccttcggcagcgagtggaggccaggcttgcagctcttttgttggaaagcaaggagtactccgaagcactaactctcctctctaccttgatcaaagaagtgagaaggctagatgacaagcttctccttgtggacatagatcttttggagagtaagcttcacttttctttgagaaatctccctaaagccaaggcttcactgactgcagctagaacagcagccaattctatctatgtgcctccagctcaacagggaactattgatttgcagagtggcatccttcatgcagaagaaaaagactacaaaactgcttacagttatttctttgaagcatttgaagccttcaatgctcttgaggatcctcgggctgtctttagcctcaagtatatgttgttgtgcaaaatcatggtgagccaggctgatgatgtggcaggaattatatcatccaaagcaggattgcagtacgttgggcctgagcttgatgccatgaaggcagtggctgatgctcactcgaagcgctctttaaagctttttgagactgctttgcgggattataaggcgcagctagaggaagaccctattgtccacaggcacctgtcttccctgtatgacactctgttagaacagaatctctgcaggttgattgagcctttctcaagggtggaaatagctcatattgcagaactgattgaactccctgttgaccacgtggagaagaagctgtctcaaatgattcttgataagaaatttgcaggaactttggatcagggtgctggctgcctcatcatttttgaggatctcaagaccgacgccatataccctgctacgctagaaaccatatccaacatgggtaaggttgttgatagcctctatgtgaggtctgccaagataatggcatga

Protein Analysis

476

Amino Acids

53.6

Weight (kDa)

6.66

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1086
AasI GACNNNNNNGTC 1 cut(s) 1112
Acc16I TGCGCA 1 cut(s) 63
Acc36I ACCTGC 1 cut(s) 1158
AccB1I GGYRCC 2 cut(s) 24, 1122
AciI CCGC 2 cut(s) 90, 1078
AclWI GGATC 4 cut(s) 884, 897, 1302, 1335
AcsI RAATTY 1 cut(s) 1277
AcuI CTGAAG 2 cut(s) 252, 461
AcvI CACGTG 1 cut(s) 1240
AcyI GRCGYC 1 cut(s) 1341
AfaI GTAC 2 cut(s) 590, 995
AfeI AGCGCT 1 cut(s) 1049
AfiI CCNNNNNNNGG 1 cut(s) 381
AflII CTTAAG 1 cut(s) 13
AgsI TTSAA 7 cut(s) 152, 198, 263, 860, 869, 877, 1223
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 2 cut(s) 554, 945
Alw26I GTCTC 2 cut(s) 1061, 1260
AlwI GGATC 4 cut(s) 884, 897, 1302, 1335
AlwNI CAGNNNCTG 1 cut(s) 1031
Ama87I CYCGRG 2 cut(s) 122, 894
Aor51HI AGCGCT 1 cut(s) 1049
AoxI GGCC 4 cut(s) 216, 383, 552, 1001
ApeKI GCWGC 6 cut(s) 541, 563, 737, 749, 1093, 1308
ApoI RAATTY 1 cut(s) 1277
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 3 cut(s) 64, 1050, 1093
AspS9I GGNCC 1 cut(s) 1001
AsuC2I CCSGG 1 cut(s) 462
AsuHPI GGTGA 2 cut(s) 304, 952
AvaI CYCGRG 2 cut(s) 122, 894
BamHI GGATCC 1 cut(s) 889
BanI GGYRCC 2 cut(s) 24, 1122
BauI CACGAG 1 cut(s) 513
BbrPI CACGTG 1 cut(s) 1240
BbsI GAAGAC 3 cut(s) 95, 1110, 1122
BbvI GCAGC 6 cut(s) 553, 575, 749, 761, 1105, 1295
BccI CCATC 3 cut(s) 235, 277, 317
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BciT130I CCWGG 2 cut(s) 556, 947
BclI TGATCA 1 cut(s) 621
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 2 cut(s) 1061, 1260
BfaI CTAG 4 cut(s) 641, 741, 1097, 1361
BfmI CTRYAG 2 cut(s) 735, 1165
BfoI RGCGCY 1 cut(s) 1051
BfrI CTTAAG 1 cut(s) 13
BfuAI ACCTGC 1 cut(s) 1158
BglI GCCNNNNNGGC 1 cut(s) 1022
BglII AGATCT 3 cut(s) 325, 355, 670
BisI GCNGC 6 cut(s) 542, 564, 738, 750, 1094, 1309
BlsI GCNGC 6 cut(s) 543, 565, 739, 751, 1095, 1310
BmcAI AGTACT 1 cut(s) 590
Bme1390I CCNGG 3 cut(s) 462, 556, 947
BmeT110I CYCGRG 2 cut(s) 122, 894
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 1001
BmiI GGNNCC 3 cut(s) 26, 891, 1124
BmrFI CCNGG 3 cut(s) 462, 556, 947
BmrI ACTGGG 1 cut(s) 370
BmsI GCATC 4 cut(s) 73, 816, 1003, 1024
BmuI ACTGGG 1 cut(s) 370
BpiI GAAGAC 3 cut(s) 95, 1110, 1122
BplI GAGNNNNNCTC 2 cut(s) 1169, 1201
BpmI CTGGAG 1 cut(s) 756
Bpu10I CCTNAGC 1 cut(s) 1005
BpuEI CTTGAG 4 cut(s) 896, 905, 1171, 1316
BpuMI CCSGG 1 cut(s) 462
BsaAI YACGTR 1 cut(s) 1240
BsaHI GRCGYC 1 cut(s) 1341
BsaJI CCNNGG 2 cut(s) 720, 893
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse1I ACTGG 1 cut(s) 376
BseBI CCWGG 2 cut(s) 556, 947
BseDI CCNNGG 2 cut(s) 720, 893
BseGI GGATG 3 cut(s) 269, 807, 974
BseLI CCNNNNNNNGG 1 cut(s) 381
BseMII CTCAG 2 cut(s) 510, 996
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 1 cut(s) 599
BseXI GCAGC 6 cut(s) 553, 575, 749, 761, 1105, 1295
BseYI CCCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 524
BshFI GGCC 4 cut(s) 218, 385, 554, 1003
BshNI GGYRCC 2 cut(s) 24, 1122
BsiHKCI CYCGRG 2 cut(s) 122, 894
BsiSI CCGG 1 cut(s) 462
BslI CCNNNNNNNGG 1 cut(s) 381
BsmAI GTCTC 2 cut(s) 1061, 1260
BsnI GGCC 4 cut(s) 218, 385, 554, 1003
BsoBI CYCGRG 2 cut(s) 122, 894
Bsp143I GATC 7 cut(s) 325, 355, 621, 670, 889, 1294, 1327
BspACI CCGC 2 cut(s) 90, 1078
BspANI GGCC 4 cut(s) 218, 385, 554, 1003
BspCNI CTCAG 2 cut(s) 511, 997
BspLI GGNNCC 3 cut(s) 26, 891, 1124
BspMAI CTGCAG 2 cut(s) 739, 1169
BspMI ACCTGC 1 cut(s) 1158
BspPI GGATC 4 cut(s) 884, 897, 1302, 1335
BspT107I GGYRCC 2 cut(s) 24, 1122
BspTI CTTAAG 1 cut(s) 13
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 720, 893
BssMI GATC 7 cut(s) 325, 355, 621, 670, 889, 1294, 1327
BssNI GRCGYC 1 cut(s) 1341
BssSI CACGAG 1 cut(s) 513
BssT1I CCWWGG 1 cut(s) 720
Bst2BI CACGAG 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 556, 947
Bst4CI ACNGT 2 cut(s) 448, 848
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 1341
BstAFI CTTAAG 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 416
BstBAI YACGTR 1 cut(s) 1240
BstC8I GCNNGC 2 cut(s) 561, 1306
BstDEI CTNAG 3 cut(s) 332, 519, 1005
BstF5I GGATG 3 cut(s) 269, 807, 974
BstH2I RGCGCY 1 cut(s) 1051
BstHHI GCGC 3 cut(s) 64, 1050, 1093
BstKTI GATC 7 cut(s) 328, 358, 624, 673, 892, 1297, 1330
BstMAI GTCTC 2 cut(s) 1061, 1260
BstMBI GATC 7 cut(s) 325, 355, 621, 670, 889, 1294, 1327
BstMWI GCNNNNNNNGC 8 cut(s) 215, 416, 560, 746, 869, 878, 1022, 1208
BstNI CCWGG 2 cut(s) 556, 947
BstSCI CCNGG 3 cut(s) 460, 554, 945
BstSFI CTRYAG 2 cut(s) 735, 1165
BstV1I GCAGC 6 cut(s) 553, 575, 749, 761, 1105, 1295
BstV2I GAAGAC 3 cut(s) 95, 1110, 1122
BstX2I RGATCY 5 cut(s) 325, 355, 670, 889, 1327
BstXI CCANNNNNNTGG 1 cut(s) 1423
BstYI RGATCY 5 cut(s) 325, 355, 670, 889, 1327
BsuRI GGCC 4 cut(s) 218, 385, 554, 1003
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 3 cut(s) 269, 807, 974
BtsI GCAGTG 2 cut(s) 512, 1032
BtsIMutI CAGTG 3 cut(s) 512, 728, 1032
BveI ACCTGC 1 cut(s) 1158
Cac8I GCNNGC 2 cut(s) 561, 1306
CaiI CAGNNNCTG 1 cut(s) 1031
CfoI GCGC 3 cut(s) 64, 1050, 1093
Cfr13I GGNCC 1 cut(s) 1001
CseI GACGC 1 cut(s) 1349
Csp6I GTAC 2 cut(s) 589, 994
CviAII CATG 6 cut(s) 499, 815, 937, 1018, 1378, 1428
CviQI GTAC 2 cut(s) 589, 994
DdeI CTNAG 3 cut(s) 332, 519, 1005
DpnI GATC 7 cut(s) 327, 357, 623, 672, 891, 1296, 1329
DpnII GATC 7 cut(s) 325, 355, 621, 670, 889, 1294, 1327
DraI TTTAAA 1 cut(s) 1056
DrdI GACNNNNNNGTC 1 cut(s) 1112
DseDI GACNNNNNNGTC 1 cut(s) 1112
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 720
Eco147I AGGCCT 1 cut(s) 385
Eco32I GATATC 1 cut(s) 132
Eco47III AGCGCT 1 cut(s) 1049
Eco57I CTGAAG 2 cut(s) 252, 461
Eco72I CACGTG 1 cut(s) 1240
Eco88I CYCGRG 2 cut(s) 122, 894
EcoRII CCWGG 2 cut(s) 554, 945
EcoRV GATATC 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 720
FaeI CATG 6 cut(s) 502, 818, 940, 1021, 1381, 1431
FalI AAGNNNNNCTT 2 cut(s) 677, 709
FatI CATG 6 cut(s) 498, 814, 936, 1017, 1377, 1427
FauI CCCGC 1 cut(s) 1071
FbaI TGATCA 1 cut(s) 621
Fnu4HI GCNGC 6 cut(s) 542, 564, 738, 750, 1094, 1309
FokI GGATG 3 cut(s) 256, 794, 961
Fsp4HI GCNGC 6 cut(s) 542, 564, 738, 750, 1094, 1309
FspAI RTGCGCAY 1 cut(s) 63
FspBI CTAG 4 cut(s) 641, 741, 1097, 1361
FspI TGCGCA 1 cut(s) 63
GlaI GCGC 3 cut(s) 63, 1049, 1092
GluI GCNGC 6 cut(s) 542, 564, 738, 750, 1094, 1309
GsaI CCCAGC 1 cut(s) 185
GsuI CTGGAG 1 cut(s) 756
HaeII RGCGCY 1 cut(s) 1051
HaeIII GGCC 4 cut(s) 218, 385, 554, 1003
HapII CCGG 1 cut(s) 462
HgaI GACGC 1 cut(s) 1349
HhaI GCGC 3 cut(s) 64, 1050, 1093
Hin1I GRCGYC 1 cut(s) 1341
Hin1II CATG 6 cut(s) 502, 818, 940, 1021, 1381, 1431
Hin6I GCGC 3 cut(s) 62, 1048, 1091
HinP1I GCGC 3 cut(s) 62, 1048, 1091
HincII GTYRAC 2 cut(s) 168, 1234
HindII GTYRAC 2 cut(s) 168, 1234
HindIII AAGCTT 3 cut(s) 650, 686, 1058
HinfI GANTC 8 cut(s) 39, 125, 194, 343, 400, 511, 1159, 1264
HpaII CCGG 1 cut(s) 462
HphI GGTGA 2 cut(s) 304, 952
Hpy166II GTNNAC 5 cut(s) 168, 510, 664, 1117, 1234
Hpy188I TCNGA 7 cut(s) 136, 232, 283, 325, 472, 480, 595
Hpy188III TCNNGA 4 cut(s) 260, 884, 1268, 1333
Hpy8I GTNNAC 5 cut(s) 168, 510, 664, 1117, 1234
Hpy99I CGWCG 1 cut(s) 1343
HpyAV CCTTC 7 cut(s) 88, 377, 545, 630, 821, 883, 1015
HpyCH4III ACNGT 2 cut(s) 448, 848
HpyCH4IV ACGT 4 cut(s) 94, 170, 996, 1239
HpyF10VI GCNNNNNNNGC 8 cut(s) 215, 416, 560, 746, 869, 878, 1022, 1208
HpyF3I CTNAG 3 cut(s) 332, 519, 1005
HpySE526I ACGT 4 cut(s) 94, 170, 996, 1239
Hsp92I GRCGYC 1 cut(s) 1341
Hsp92II CATG 6 cut(s) 502, 818, 940, 1021, 1381, 1431
HspAI GCGC 3 cut(s) 62, 1048, 1091
Ksp22I TGATCA 1 cut(s) 621
Kzo9I GATC 7 cut(s) 325, 355, 621, 670, 889, 1294, 1327
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 6 cut(s) 553, 575, 749, 761, 1105, 1295
LweI GCATC 4 cut(s) 73, 816, 1003, 1024
MaeI CTAG 4 cut(s) 641, 741, 1097, 1361
MaeII ACGT 4 cut(s) 94, 170, 996, 1239
MaeIII GTNAC 1 cut(s) 362
MalI GATC 7 cut(s) 327, 357, 623, 672, 891, 1296, 1329
MboI GATC 7 cut(s) 325, 355, 621, 670, 889, 1294, 1327
MfeI CAATTG 1 cut(s) 198
MflI RGATCY 5 cut(s) 325, 355, 670, 889, 1327
MluCI AATT 4 cut(s) 198, 754, 966, 1277
MlyI GAGTC 3 cut(s) 33, 134, 505
MmeI TCCRAC 2 cut(s) 555, 1398
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 2 cut(s) 14, 1055
MspCI CTTAAG 1 cut(s) 13
MspI CCGG 1 cut(s) 462
MspR9I CCNGG 3 cut(s) 462, 556, 947
MunI CAATTG 1 cut(s) 198
MvaI CCWGG 2 cut(s) 556, 947
MwoI GCNNNNNNNGC 8 cut(s) 215, 416, 560, 746, 869, 878, 1022, 1208
NciI CCSGG 1 cut(s) 462
NdeII GATC 7 cut(s) 325, 355, 621, 670, 889, 1294, 1327
NlaIII CATG 6 cut(s) 502, 818, 940, 1021, 1381, 1431
NlaIV GGNNCC 3 cut(s) 26, 891, 1124
NsbI TGCGCA 1 cut(s) 63
PaeR7I CTCGAG 1 cut(s) 122
PceI AGGCCT 1 cut(s) 385
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 5 cut(s) 194, 343, 400, 1159, 1264
PflFI GACNNNGTC 1 cut(s) 163
PkrI GCNGC 6 cut(s) 543, 565, 739, 751, 1095, 1310
PleI GAGTC 3 cut(s) 33, 133, 505
PmaCI CACGTG 1 cut(s) 1240
PmlI CACGTG 1 cut(s) 1240
PpsI GAGTC 3 cut(s) 33, 133, 505
Ppu21I YACGTR 1 cut(s) 1240
PsiI TTATAA 1 cut(s) 1086
Psp6I CCWGG 2 cut(s) 554, 945
PspCI CACGTG 1 cut(s) 1240
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 2 cut(s) 554, 945
PspN4I GGNNCC 3 cut(s) 26, 891, 1124
PspPI GGNCC 1 cut(s) 1001
PspXI VCTCGAGB 1 cut(s) 122
PstI CTGCAG 2 cut(s) 739, 1169
PstNI CAGNNNCTG 1 cut(s) 1031
PsuI RGATCY 5 cut(s) 325, 355, 670, 889, 1327
PsyI GACNNNGTC 1 cut(s) 163
RsaI GTAC 2 cut(s) 590, 995
RsaNI GTAC 2 cut(s) 589, 994
SaqAI TTAA 2 cut(s) 14, 1055
SatI GCNGC 6 cut(s) 542, 564, 738, 750, 1094, 1309
Sau3AI GATC 7 cut(s) 325, 355, 621, 670, 889, 1294, 1327
Sau96I GGNCC 1 cut(s) 1001
ScaI AGTACT 1 cut(s) 590
SchI GAGTC 3 cut(s) 33, 134, 505
ScrFI CCNGG 3 cut(s) 462, 556, 947
SfaNI GCATC 4 cut(s) 73, 816, 1003, 1024
SfcI CTRYAG 2 cut(s) 735, 1165
Sfr274I CTCGAG 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 122
SmlI CTYRAG 6 cut(s) 13, 122, 884, 911, 1186, 1331
SmoI CTYRAG 6 cut(s) 13, 122, 884, 911, 1186, 1331
Sse9I AATT 4 cut(s) 198, 754, 966, 1277
SseBI AGGCCT 1 cut(s) 385
SsiI CCGC 2 cut(s) 90, 1078
SspMI CTAG 4 cut(s) 641, 741, 1097, 1361
StuI AGGCCT 1 cut(s) 385
StyD4I CCNGG 3 cut(s) 460, 554, 945
StyI CCWWGG 1 cut(s) 720
TaaI ACNGT 2 cut(s) 448, 848
TaiI ACGT 4 cut(s) 97, 173, 999, 1242
TaqI TCGA 4 cut(s) 37, 123, 128, 1043
TaqII GACCGA 1 cut(s) 1352
TasI AATT 4 cut(s) 198, 754, 966, 1277
TatI WGTACW 1 cut(s) 588
TfiI GAWTC 5 cut(s) 194, 343, 400, 1159, 1264
Tru1I TTAA 2 cut(s) 14, 1055
Tru9I TTAA 2 cut(s) 14, 1055
TscAI CASTG 3 cut(s) 512, 735, 1032
TseI GCWGC 6 cut(s) 541, 563, 737, 749, 1093, 1308
TspDTI ATGAA 2 cut(s) 803, 1034
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 3 cut(s) 512, 735, 1032
Tth111I GACNNNGTC 1 cut(s) 163
Vha464I CTTAAG 1 cut(s) 13
XapI RAATTY 1 cut(s) 1277
XcmI CCANNNNNNNNNTGG 2 cut(s) 1024, 1375
XhoI CTCGAG 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 4 cut(s) 641, 741, 1097, 1361
ZrmI AGTACT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.