Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009973

Physical Location & Seq

Genomic Coordinates Reverse (-)

28343268 .. 28346231

Gene Structure 2964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G279500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGTCTTCATCATATCTCCCAGCAACTACTGATTCGATTGCTCAAGCTTTAGAGGCCAAAGCCCCATCTGAAGCCATTTCCATTCTTTATCGCATTCTTGAAAACCCATCTTCTTCTTCTGAAGCTCTGCGGATAAAGGAACAGGCTATCGCAAATCTGACGGATCTTCTTAGACAAGAAAATCGGGCAGAGGATCTTCGTAACCTTCTTACCCAGTTGAGGCCTTTCTTTAACTTGATTCCCAAGGCGAAAACTGCAAAAATTGTTCGTAGTATTATTGATGCAGTAGCTAAAGTACCAGGCACATCTGATCTTCAGATTTCCCTTTGCAAAGAAATGGTGCAGTGGACCCGTGCTGAGAAGCGAACTTTCCTTCGACAGCGAGTGGAGGCCAGGCTTGCATCTCTTTTGATGGAAAGCAAGGAGTATTCAGAAGCACTAAGTCTCCTATCAGGCTTGATCAAGGAAGTGAGAAGGCTAGATGACAAGCTTCTCCTTGTGGACATAGATTTGTTGGAGAGTAAGCTCCATTTCTCTTTGAGAAATCTCCCTAAAGCCAAGGCTTCACTCACAGCTGCACGAACAGCAGCCAATTCCATATATGTGCCTCCAGCTCAGCAGGGAACTATTGATTTGCAGAGTGGGATTCTTCATGCCGAAGAAAAGGACTACAAGACTGCTTATAGTTATTTCTTTGAAGCATTTGAAGCCTTCAATGCTCTTGAAGACCCTCGGGCTGTATTTAGCCTCAAGTATATGTTGCTGTGCAAAATCATGGTGAGCCAGGCTGATGATGTGGCAGGTATAATATCATCAAAAGCAGGACTACAGTATGTGGGGCCCGAGCTGGATGCTATGAAAGCAGTTGCTGATGCTCACTCGAAGCGCTCTTTAAAGCTCTTTGAAACTGCTCTTCGGGATTTTAAGGCCCAGCTGGAGGAAGATCCCATTGTCCACAGGCACCTTTCATCCCTGTATGACACTCTGTTGGAACAGAATCTCTGCAGGTTGATTGAGCCTTTCTCAAGGGTGGAGATTGCTCATATTGCAGAACTCATTGAACTGCCAATCGATCATGTGGAAAAGAAACTGTCTCAGATGATTCTGGACAAGAAGTTTGCAGGGACTTTAGATCAGGGTGCTGGATGCCTCATCATTTTCGACGATCCCAAAACGGATGCAATCTACCCTGCAACGTTGGAAACCATATCTAACATCGGCAAGGTTGTGGACAGCCTCTACGTGAGGTCTGCAAAGATAATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030054 GO:0030154 GO:0030163 GO:0032502 GO:0032991 GO:0034622 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048863 GO:0048869 GO:0050896 GO:0051603 GO:0055044 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

423

Amino Acids

47.08

Weight (kDa)

6.07

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29150 AT1G29150
fragaria_vesca	FvH4_4g30750
malus_domestica	MD13G1068400.v1.1 MD16G1067200.v1.1
prunus_persica	Prupe.1G279500_v2.0.a1
pyrus_communis	pycom13g06020
rosa_chinensis	RchiOBHm_Chr4g0439141 RchiOBHm_Chr6g0255431
rosa_laevigata	RLG00000006294
rosa_multiflora	Rmu_sc0002236.1_g000002 Rmu_sc0027506.1_g000003
rosa_roxburghii	Rroxscaffold_5G00380130
rosa_rugosa	Rorug04G0316000
rosa_samantha	Rh4AG366900 Rh4BG378400 Rh4CG392700 Rh4DG373000
rosa_wichuraiana	Rw0G007510 Rw0G011720 Rw6G006640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	791, 996
AccB1I	GGYRCC	1 cut(s)	960
AciI	CCGC	1 cut(s)	130
AclI	AACGTT	1 cut(s)	1196
AclWI	GGATC	4 cut(s)	171, 201, 938, 1160
AcuI	CTGAAG	3 cut(s)	90, 141, 299
AfaI	GTAC	1 cut(s)	297
AfeI	AGCGCT	1 cut(s)	887
AfiI	CCNNNNNNNGG	2 cut(s)	219, 937
AgsI	TTSAA	7 cut(s)	101, 698, 707, 715, 725, 905, 1061
AjnI	CCWGG	3 cut(s)	298, 392, 783
Alw26I	GTCTC	2 cut(s)	449, 1098
AlwI	GGATC	4 cut(s)	171, 201, 938, 1160
AlwNI	CAGNNNCTG	1 cut(s)	869
Ama87I	CYCGRG	2 cut(s)	732, 842
Aor51HI	AGCGCT	1 cut(s)	887
AoxI	GGCC	5 cut(s)	54, 221, 390, 839, 927
ApaI	GGGCCC	1 cut(s)	843
ApeKI	GCWGC	2 cut(s)	575, 587
ArsI	GACNNNNNNTTYG	2 cut(s)	1100, 1132
AspLEI	GCGC	1 cut(s)	888
AspS9I	GGNCC	4 cut(s)	348, 839, 840, 928
AsuHPI	GGTGA	1 cut(s)	790
AvaI	CYCGRG	2 cut(s)	732, 842
AvaII	GGWCC	1 cut(s)	348
BaeGI	GKGCMC	1 cut(s)	843
BanI	GGYRCC	1 cut(s)	960
BanII	GRGCYC	1 cut(s)	843
BbsI	GAAGAC	1 cut(s)	732
BbvI	GCAGC	2 cut(s)	562, 599
BccI	CCATC	3 cut(s)	73, 115, 406
BcgI	CGANNNNNNTGC	2 cut(s)	833, 867
BciT130I	CCWGG	3 cut(s)	300, 394, 785
BclI	TGATCA	1 cut(s)	459
BcoDI	GTCTC	2 cut(s)	449, 1098
BfaI	CTAG	1 cut(s)	479
BfmI	CTRYAG	2 cut(s)	827, 1003
BfoI	RGCGCY	1 cut(s)	889
BfuAI	ACCTGC	2 cut(s)	791, 996
BisI	GCNGC	2 cut(s)	576, 588
BlpI	GCTNAGC	1 cut(s)	615
BlsI	GCNGC	2 cut(s)	577, 589
Bme1390I	CCNGG	3 cut(s)	300, 394, 785
Bme18I	GGWCC	1 cut(s)	348
BmeT110I	CYCGRG	2 cut(s)	732, 842
BmgT120I	GGNCC	4 cut(s)	348, 839, 840, 928
BmiI	GGNNCC	4 cut(s)	350, 840, 841, 962
BmrFI	CCNGG	3 cut(s)	300, 394, 785
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	6 cut(s)	271, 410, 841, 862, 1136, 1168
BmuI	ACTGGG	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	732
BplI	GAGNNNNNCTC	2 cut(s)	1007, 1039
BpmI	CTGGAG	2 cut(s)	594, 956
Bpu1102I	GCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	3 cut(s)	27, 734, 1009
Bsa29I	ATCGAT	1 cut(s)	1071
BsaAI	YACGTR	1 cut(s)	1243
BsaJI	CCNNGG	3 cut(s)	243, 558, 731
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 937
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	3 cut(s)	300, 394, 785
BseCI	ATCGAT	1 cut(s)	1071
BseDI	CCNNGG	3 cut(s)	243, 558, 731
BseGI	GGATG	4 cut(s)	856, 968, 1151, 1183
BseLI	CCNNNNNNNGG	2 cut(s)	219, 937
BseMII	CTCAG	3 cut(s)	348, 629, 1109
BseNI	ACTGG	1 cut(s)	214
BseSI	GKGCMC	1 cut(s)	843
BseXI	GCAGC	2 cut(s)	562, 599
BseYI	CCCAGC	2 cut(s)	19, 930
BsgI	GTGCAG	2 cut(s)	362, 561
BshFI	GGCC	5 cut(s)	56, 223, 392, 841, 929
BshNI	GGYRCC	1 cut(s)	960
BshVI	ATCGAT	1 cut(s)	1071
BsiHKCI	CYCGRG	2 cut(s)	732, 842
BslFI	GGGAC	1 cut(s)	1138
BslI	CCNNNNNNNGG	2 cut(s)	219, 937
BsmAI	GTCTC	2 cut(s)	449, 1098
BsmFI	GGGAC	1 cut(s)	1138
BsmI	GAATGC	1 cut(s)	93
BsnI	GGCC	5 cut(s)	56, 223, 392, 841, 929
BsoBI	CYCGRG	2 cut(s)	732, 842
Bsp120I	GGGCCC	1 cut(s)	839
Bsp1286I	GDGCHC	1 cut(s)	843
Bsp143I	GATC	8 cut(s)	163, 193, 310, 459, 943, 1072, 1132, 1165
Bsp1720I	GCTNAGC	1 cut(s)	615
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	5 cut(s)	56, 223, 392, 841, 929
BspCNI	CTCAG	3 cut(s)	349, 628, 1108
BspDI	ATCGAT	1 cut(s)	1071
BspLI	GGNNCC	4 cut(s)	350, 840, 841, 962
BspMAI	CTGCAG	1 cut(s)	1007
BspMI	ACCTGC	2 cut(s)	791, 996
BspPI	GGATC	4 cut(s)	171, 201, 938, 1160
BspQI	GCTCTTC	1 cut(s)	918
BspT107I	GGYRCC	1 cut(s)	960
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	3 cut(s)	243, 558, 731
BssMI	GATC	8 cut(s)	163, 193, 310, 459, 943, 1072, 1132, 1165
BssT1I	CCWWGG	2 cut(s)	243, 558
Bst2UI	CCWGG	3 cut(s)	300, 394, 785
Bst4CI	ACNGT	2 cut(s)	831, 1092
Bst6I	CTCTTC	1 cut(s)	918
BstBAI	YACGTR	1 cut(s)	1243
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	5 cut(s)	170, 357, 440, 615, 1095
BstF5I	GGATG	4 cut(s)	856, 968, 1151, 1183
BstH2I	RGCGCY	1 cut(s)	889
BstHHI	GCGC	1 cut(s)	888
BstKTI	GATC	8 cut(s)	166, 196, 313, 462, 946, 1075, 1135, 1168
BstMAI	GTCTC	2 cut(s)	449, 1098
BstMBI	GATC	8 cut(s)	163, 193, 310, 459, 943, 1072, 1132, 1165
BstMWI	GCNNNNNNNGC	8 cut(s)	53, 254, 398, 584, 707, 716, 860, 1046
BstNI	CCWGG	3 cut(s)	300, 394, 785
BstSCI	CCNGG	3 cut(s)	298, 392, 783
BstSFI	CTRYAG	2 cut(s)	827, 1003
BstSLI	GKGCMC	1 cut(s)	843
BstV1I	GCAGC	2 cut(s)	562, 599
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	3 cut(s)	163, 193, 943
BstYI	RGATCY	3 cut(s)	163, 193, 943
Bsu15I	ATCGAT	1 cut(s)	1071
BsuRI	GGCC	5 cut(s)	56, 223, 392, 841, 929
BsuTUI	ATCGAT	1 cut(s)	1071
BtsCI	GGATG	4 cut(s)	856, 968, 1151, 1183
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	1 cut(s)	350
BveI	ACCTGC	2 cut(s)	791, 996
Cac8I	GCNNGC	1 cut(s)	399
CaiI	CAGNNNCTG	1 cut(s)	869
CfoI	GCGC	1 cut(s)	888
Cfr13I	GGNCC	4 cut(s)	348, 839, 840, 928
ClaI	ATCGAT	1 cut(s)	1071
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	4 cut(s)	653, 775, 1076, 1266
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	5 cut(s)	170, 357, 440, 615, 1095
DpnI	GATC	8 cut(s)	165, 195, 312, 461, 945, 1074, 1134, 1167
DpnII	GATC	8 cut(s)	163, 193, 310, 459, 943, 1072, 1132, 1165
DraI	TTTAAA	1 cut(s)	894
Eam1104I	CTCTTC	1 cut(s)	918
EarI	CTCTTC	1 cut(s)	918
Eco130I	CCWWGG	2 cut(s)	243, 558
Eco147I	AGGCCT	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	843
Eco47I	GGWCC	1 cut(s)	348
Eco47III	AGCGCT	1 cut(s)	887
Eco57I	CTGAAG	3 cut(s)	90, 141, 299
Eco88I	CYCGRG	2 cut(s)	732, 842
EcoO109I	RGGNCCY	1 cut(s)	839
EcoRII	CCWGG	3 cut(s)	298, 392, 783
EcoT14I	CCWWGG	2 cut(s)	243, 558
EcoT38I	GRGCYC	1 cut(s)	843
ErhI	CCWWGG	2 cut(s)	243, 558
FaeI	CATG	4 cut(s)	656, 778, 1079, 1269
FaqI	GGGAC	1 cut(s)	1138
FatI	CATG	4 cut(s)	652, 774, 1075, 1265
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	576, 588
FokI	GGATG	4 cut(s)	863, 955, 1158, 1190
FriOI	GRGCYC	1 cut(s)	843
Fsp4HI	GCNGC	2 cut(s)	576, 588
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	1 cut(s)	887
GluI	GCNGC	2 cut(s)	576, 588
GsaI	CCCAGC	2 cut(s)	23, 934
GsuI	CTGGAG	2 cut(s)	594, 956
HaeII	RGCGCY	1 cut(s)	889
HaeIII	GGCC	5 cut(s)	56, 223, 392, 841, 929
HhaI	GCGC	1 cut(s)	888
Hin1II	CATG	4 cut(s)	656, 778, 1079, 1269
Hin6I	GCGC	1 cut(s)	886
HinP1I	GCGC	1 cut(s)	886
HindIII	AAGCTT	2 cut(s)	45, 488
HinfI	GANTC	5 cut(s)	32, 238, 646, 997, 1102
HphI	GGTGA	1 cut(s)	790
Hpy166II	GTNNAC	4 cut(s)	348, 502, 955, 1231
Hpy188I	TCNGA	7 cut(s)	70, 121, 159, 310, 318, 433, 1098
Hpy188III	TCNNGA	4 cut(s)	98, 722, 917, 1106
Hpy8I	GTNNAC	4 cut(s)	348, 502, 955, 1231
Hpy99I	CGWCG	1 cut(s)	1166
HpyAV	CCTTC	4 cut(s)	215, 383, 468, 721
HpyCH4III	ACNGT	2 cut(s)	831, 1092
HpyCH4IV	ACGT	2 cut(s)	1196, 1242
HpyF10VI	GCNNNNNNNGC	8 cut(s)	53, 254, 398, 584, 707, 716, 860, 1046
HpyF3I	CTNAG	5 cut(s)	170, 357, 440, 615, 1095
HpySE526I	ACGT	2 cut(s)	1196, 1242
Hsp92II	CATG	4 cut(s)	656, 778, 1079, 1269
HspAI	GCGC	1 cut(s)	886
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	8 cut(s)	163, 193, 310, 459, 943, 1072, 1132, 1165
LguI	GCTCTTC	1 cut(s)	918
LmnI	GCTCC	1 cut(s)	531
Lsp1109I	GCAGC	2 cut(s)	562, 599
LweI	GCATC	6 cut(s)	271, 410, 841, 862, 1136, 1168
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	2 cut(s)	1196, 1242
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	8 cut(s)	165, 195, 312, 461, 945, 1074, 1134, 1167
MboI	GATC	8 cut(s)	163, 193, 310, 459, 943, 1072, 1132, 1165
MflI	RGATCY	3 cut(s)	163, 193, 943
MhlI	GDGCHC	1 cut(s)	843
MluCI	AATT	2 cut(s)	261, 592
MmeI	TCCRAC	3 cut(s)	495, 969, 1179
MseI	TTAA	3 cut(s)	231, 893, 924
MslI	CAYNNNNRTG	1 cut(s)	602
MspA1I	CMGCKG	2 cut(s)	575, 934
MspR9I	CCNGG	3 cut(s)	300, 394, 785
Mva1269I	GAATGC	1 cut(s)	93
MvaI	CCWGG	3 cut(s)	300, 394, 785
MwoI	GCNNNNNNNGC	8 cut(s)	53, 254, 398, 584, 707, 716, 860, 1046
NdeII	GATC	8 cut(s)	163, 193, 310, 459, 943, 1072, 1132, 1165
NlaIII	CATG	4 cut(s)	656, 778, 1079, 1269
NlaIV	GGNNCC	4 cut(s)	350, 840, 841, 962
PceI	AGGCCT	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	918
PctI	GAATGC	1 cut(s)	93
PfeI	GAWTC	5 cut(s)	32, 238, 646, 997, 1102
PkrI	GCNGC	2 cut(s)	577, 589
Ppu21I	YACGTR	1 cut(s)	1243
Psp1406I	AACGTT	1 cut(s)	1196
Psp6I	CCWGG	3 cut(s)	298, 392, 783
PspFI	CCCAGC	2 cut(s)	19, 930
PspGI	CCWGG	3 cut(s)	298, 392, 783
PspN4I	GGNNCC	4 cut(s)	350, 840, 841, 962
PspOMI	GGGCCC	1 cut(s)	839
PspPI	GGNCC	4 cut(s)	348, 839, 840, 928
PstI	CTGCAG	1 cut(s)	1007
PstNI	CAGNNNCTG	1 cut(s)	869
PsuI	RGATCY	3 cut(s)	163, 193, 943
PvuII	CAGCTG	2 cut(s)	575, 934
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	602
SapI	GCTCTTC	1 cut(s)	918
SaqAI	TTAA	3 cut(s)	231, 893, 924
SatI	GCNGC	2 cut(s)	576, 588
Sau3AI	GATC	8 cut(s)	163, 193, 310, 459, 943, 1072, 1132, 1165
Sau96I	GGNCC	4 cut(s)	348, 839, 840, 928
ScrFI	CCNGG	3 cut(s)	300, 394, 785
SduI	GDGCHC	1 cut(s)	843
SfaNI	GCATC	6 cut(s)	271, 410, 841, 862, 1136, 1168
SfcI	CTRYAG	2 cut(s)	827, 1003
SinI	GGWCC	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	602
SmlI	CTYRAG	3 cut(s)	42, 749, 1024
SmoI	CTYRAG	3 cut(s)	42, 749, 1024
Sse9I	AATT	2 cut(s)	261, 592
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	1 cut(s)	479
StuI	AGGCCT	1 cut(s)	223
StyD4I	CCNGG	3 cut(s)	298, 392, 783
StyI	CCWWGG	2 cut(s)	243, 558
TaaI	ACNGT	2 cut(s)	831, 1092
TaiI	ACGT	2 cut(s)	1199, 1245
TaqI	TCGA	5 cut(s)	35, 376, 881, 1071, 1161
TasI	AATT	2 cut(s)	261, 592
TfiI	GAWTC	5 cut(s)	32, 238, 646, 997, 1102
Tru1I	TTAA	3 cut(s)	231, 893, 924
Tru9I	TTAA	3 cut(s)	231, 893, 924
TscAI	CASTG	1 cut(s)	350
TseI	GCWGC	2 cut(s)	575, 587
TspDTI	ATGAA	3 cut(s)	641, 872, 957
TspGWI	ACGGA	2 cut(s)	176, 1190
TspRI	CASTG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	348
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.