Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009973

Physical Location & Seq

Genomic Coordinates Forward (+)

30226876 .. 30229706

Gene Structure 2831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGTCAACATCATACCTCCCTGCAACAAAAGATTCGATTGCTCTGGCTTCAGAGGCCAAAGCTCCATCCGAAGGCATAGCTATTCTGTATCGTATTCTTGAAGACCCATCCACTTCTTCTGAAGCTCTACGCATAAAGGAACAGGCAATCACCGATCTGGCAGATCTTCTTAGACAAGAGAATCGGGGAGAAGATCTTCGTAACCTTCTTACCCAGTTGAGGCCTTTCTTTAGCTTGATTCCGAAGGCGAAAACTGCAAAGATTGTTCGTAGCATAATAGACACGGTTGCTAAAATCCCTGGCACAACTGAACTTCAGATTTCCCTATGCAAAGACATGGTGCAGTGGACTCGTGCTGAGAAGCGAACTTTCCTTCGGCAGCGAGTGGAAGCCAGGCTTGCAGCTCTTTTGTTGGAAAGCAAGGAGTACTCAGAAGCACTAACTCTTCTCTCCAGCTTGATCAAAGAAGTGAGAAGGCTAGATGACAAGCTTCTCCTTGTGGACATAGATTTGTTGGAGAGTAAGCTTCACTTTTCTTTGAGAAATCTCCCTAAAGCCAAGGCTTCACTGACTGCAGCAAGAACAGCAGCCAATTCTATCTATGTGCCTCCAGCTCAACAGGGAACTATTGATTTGCAGAGTGGCATCCTTCATGCAGAAGAAAAGGACTACAAAACTGCTTACAGTTATTTCTTTGAGGCTTTTGAAGCCTTCAATGCTCTTGAAGATTCTCGGGCTGTCTTTAGCCTCAAGTATATGCTGTTGTGCAAAATCATGGTCAGCCAGGCTGATGATGTGGCAGGAATTATATCATCCAAAGCAGGCTTGCGGTATGTCGGGCCTGAGCTTGATGCCATGAAGGCAGTGGCTGATGCTCACTCAAAGCGCTCATTGAAGCTTTTTGAGACTGCTCTACGGGATTATAAGGCGCAGCTAGAGGAAGACCCTATTGTCCATAGGCACCTCTCTTCCCTGTATGAGACTCTATTGGAACAGAATCTCTGCAGGTTGATTGAGCCATTCTCAAGGGTGGAAATAGCACACATTGCCGAACTGATTGAACTCCCTGTCGACCACGTGGAGAAGAAGCTGTCTCAATTAATTCTGGACAAGAAGTTTGCAGGAACTTTAGATCAGGGTGCTGGCTGCCTCATTATTTTTGAAGAGCTGAAGACGGACGCCATATACCCTGCTACACTGGAGACGATATCCAACATGGGCAAGGTTGTGGATAGCCTCTACGTGAGGTCTGCCAAGATAATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030054 GO:0030154 GO:0030163 GO:0032502 GO:0032991 GO:0034622 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048863 GO:0048869 GO:0050896 GO:0051603 GO:0055044 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

423

Amino Acids

47.18

Weight (kDa)

6.08

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN6_N	PF18055	18 - 128	2.3e-34	26S proteasome regulatory subunit RPN6 N-terminal domain
PCI	PF01399	305 - 387	2e-21	PCI domain
RPN6_C_helix	PF18503	393 - 418	9.3e-13	26S proteasome subunit RPN6 C-terminal helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29150 AT1G29150
fragaria_vesca	FvH4_4g30750
malus_domestica	MD13G1068400.v1.1 MD16G1067200.v1.1
prunus_persica	Prupe.1G279500_v2.0.a1
pyrus_communis	pycom13g06020
rosa_chinensis	RchiOBHm_Chr4g0439141 RchiOBHm_Chr6g0255431
rosa_laevigata	RLG00000006294
rosa_multiflora	Rmu_sc0002236.1_g000002 Rmu_sc0027506.1_g000003
rosa_roxburghii	Rroxscaffold_5G00380130
rosa_rugosa	Rorug04G0316000
rosa_samantha	Rh4AG366900 Rh4BG378400 Rh4CG392700 Rh4DG373000
rosa_wichuraiana	Rw0G007510 Rw0G011720 Rw6G006640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	924
AasI	GACNNNNNNGTC	1 cut(s)	950
Acc36I	ACCTGC	1 cut(s)	996
AccB1I	GGYRCC	1 cut(s)	960
AccI	GTMKAC	1 cut(s)	1071
AciI	CCGC	1 cut(s)	829
AcuI	CTGAAG	4 cut(s)	33, 141, 299, 1190
AcvI	CACGTG	1 cut(s)	1078
AcyI	GRCGYC	1 cut(s)	1179
AfaI	GTAC	1 cut(s)	428
AfeI	AGCGCT	1 cut(s)	887
AfiI	CCNNNNNNNGG	2 cut(s)	71, 219
AgsI	TTSAA	7 cut(s)	101, 707, 715, 725, 895, 1061, 1163
AjnI	CCWGG	3 cut(s)	298, 392, 783
Alw26I	GTCTC	4 cut(s)	899, 974, 1098, 1196
AlwNI	CAGNNNCTG	1 cut(s)	869
Ama87I	CYCGRG	1 cut(s)	732
Aor51HI	AGCGCT	1 cut(s)	887
AoxI	GGCC	3 cut(s)	54, 221, 839
ApeKI	GCWGC	6 cut(s)	379, 401, 575, 587, 931, 1146
ArsI	GACNNNNNNTTYG	4 cut(s)	762, 794, 1100, 1132
AseI	ATTAAT	1 cut(s)	1100
Asp700I	GAANNNNTTC	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	888, 931
AspS9I	GGNCC	1 cut(s)	839
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	732
BanI	GGYRCC	1 cut(s)	960
BauI	CACGAG	1 cut(s)	351
BbrPI	CACGTG	1 cut(s)	1078
BbsI	GAAGAC	3 cut(s)	108, 948, 1178
BbvI	GCAGC	6 cut(s)	391, 413, 587, 599, 943, 1133
BccI	CCATC	2 cut(s)	73, 115
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BciT130I	CCWGG	3 cut(s)	300, 394, 785
BclI	TGATCA	1 cut(s)	459
BcoDI	GTCTC	4 cut(s)	899, 974, 1098, 1196
BfaI	CTAG	2 cut(s)	479, 935
BfmI	CTRYAG	2 cut(s)	573, 1003
BfoI	RGCGCY	1 cut(s)	889
BfuAI	ACCTGC	1 cut(s)	996
BglI	GCCNNNNNGGC	1 cut(s)	860
BglII	AGATCT	2 cut(s)	163, 193
BisI	GCNGC	6 cut(s)	380, 402, 576, 588, 932, 1147
BlsI	GCNGC	6 cut(s)	381, 403, 577, 589, 933, 1148
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	3 cut(s)	300, 394, 785
BmeT110I	CYCGRG	1 cut(s)	732
BmgT120I	GGNCC	1 cut(s)	839
BmiI	GGNNCC	1 cut(s)	962
BmrFI	CCNGG	3 cut(s)	300, 394, 785
BmrI	ACTGGG	1 cut(s)	208
BmsI	GCATC	3 cut(s)	654, 841, 862
BmuI	ACTGGG	1 cut(s)	208
BpiI	GAAGAC	3 cut(s)	108, 948, 1178
BplI	GAGNNNNNCTC	2 cut(s)	1007, 1039
BpmI	CTGGAG	3 cut(s)	436, 594, 1220
Bpu10I	CCTNAGC	1 cut(s)	843
BpuEI	CTTGAG	2 cut(s)	734, 1009
BsaAI	YACGTR	2 cut(s)	1078, 1243
BsaHI	GRCGYC	1 cut(s)	1179
BsaJI	CCNNGG	2 cut(s)	298, 558
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 219
Bse1I	ACTGG	2 cut(s)	214, 1203
Bse3DI	GCAATG	1 cut(s)	1044
BseBI	CCWGG	3 cut(s)	300, 394, 785
BseDI	CCNNGG	2 cut(s)	298, 558
BseGI	GGATG	4 cut(s)	65, 107, 645, 812
BseLI	CCNNNNNNNGG	2 cut(s)	71, 219
BseMI	GCAATG	1 cut(s)	1044
BseMII	CTCAG	3 cut(s)	348, 444, 834
BseNI	ACTGG	2 cut(s)	214, 1203
BseXI	GCAGC	6 cut(s)	391, 413, 587, 599, 943, 1133
BsgI	GTGCAG	1 cut(s)	362
BshFI	GGCC	3 cut(s)	56, 223, 841
BshNI	GGYRCC	1 cut(s)	960
BsiHKCI	CYCGRG	1 cut(s)	732
BslI	CCNNNNNNNGG	2 cut(s)	71, 219
BsmAI	GTCTC	4 cut(s)	899, 974, 1098, 1196
BsmBI	CGTCTC	1 cut(s)	1196
BsnI	GGCC	3 cut(s)	56, 223, 841
BsoBI	CYCGRG	1 cut(s)	732
Bsp143I	GATC	5 cut(s)	154, 163, 193, 459, 1132
BspACI	CCGC	1 cut(s)	829
BspANI	GGCC	3 cut(s)	56, 223, 841
BspCNI	CTCAG	3 cut(s)	349, 443, 835
BspLI	GGNNCC	1 cut(s)	962
BspMAI	CTGCAG	2 cut(s)	577, 1007
BspMI	ACCTGC	1 cut(s)	996
BspQI	GCTCTTC	1 cut(s)	1158
BspT107I	GGYRCC	1 cut(s)	960
BsrDI	GCAATG	1 cut(s)	1044
BsrI	ACTGG	2 cut(s)	214, 1203
BssECI	CCNNGG	2 cut(s)	298, 558
BssMI	GATC	5 cut(s)	154, 163, 193, 459, 1132
BssNI	GRCGYC	1 cut(s)	1179
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	558
Bst2BI	CACGAG	1 cut(s)	351
Bst2UI	CCWGG	3 cut(s)	300, 394, 785
Bst4CI	ACNGT	2 cut(s)	286, 686
Bst6I	CTCTTC	3 cut(s)	450, 973, 1158
BstACI	GRCGYC	1 cut(s)	1179
BstAPI	GCANNNNNTGC	1 cut(s)	1046
BstBAI	YACGTR	2 cut(s)	1078, 1243
BstC8I	GCNNGC	4 cut(s)	399, 823, 827, 1144
BstDEI	CTNAG	4 cut(s)	170, 357, 430, 843
BstF5I	GGATG	4 cut(s)	65, 107, 645, 812
BstH2I	RGCGCY	1 cut(s)	889
BstHHI	GCGC	2 cut(s)	888, 931
BstKTI	GATC	5 cut(s)	157, 166, 196, 462, 1135
BstMAI	GTCTC	4 cut(s)	899, 974, 1098, 1196
BstMBI	GATC	5 cut(s)	154, 163, 193, 459, 1132
BstMWI	GCNNNNNNNGC	8 cut(s)	53, 254, 398, 584, 707, 716, 860, 1046
BstNI	CCWGG	3 cut(s)	300, 394, 785
BstSCI	CCNGG	3 cut(s)	298, 392, 783
BstSFI	CTRYAG	2 cut(s)	573, 1003
BstV1I	GCAGC	6 cut(s)	391, 413, 587, 599, 943, 1133
BstV2I	GAAGAC	3 cut(s)	108, 948, 1178
BstX2I	RGATCY	2 cut(s)	163, 193
BstXI	CCANNNNNNTGG	1 cut(s)	1261
BstYI	RGATCY	2 cut(s)	163, 193
BsuRI	GGCC	3 cut(s)	56, 223, 841
BtsCI	GGATG	4 cut(s)	65, 107, 645, 812
BtsI	GCAGTG	2 cut(s)	350, 870
BtsIMutI	CAGTG	4 cut(s)	350, 566, 870, 1196
BveI	ACCTGC	1 cut(s)	996
Cac8I	GCNNGC	4 cut(s)	399, 823, 827, 1144
CaiI	CAGNNNCTG	1 cut(s)	869
CfoI	GCGC	2 cut(s)	888, 931
Cfr13I	GGNCC	1 cut(s)	839
CseI	GACGC	1 cut(s)	1187
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	6 cut(s)	337, 653, 775, 856, 1216, 1266
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	4 cut(s)	170, 357, 430, 843
DpnI	GATC	5 cut(s)	156, 165, 195, 461, 1134
DpnII	GATC	5 cut(s)	154, 163, 193, 459, 1132
DrdI	GACNNNNNNGTC	1 cut(s)	950
DseDI	GACNNNNNNGTC	1 cut(s)	950
Eam1104I	CTCTTC	3 cut(s)	450, 973, 1158
EarI	CTCTTC	3 cut(s)	450, 973, 1158
Eco130I	CCWWGG	1 cut(s)	558
Eco147I	AGGCCT	1 cut(s)	223
Eco32I	GATATC	1 cut(s)	1209
Eco47III	AGCGCT	1 cut(s)	887
Eco57I	CTGAAG	4 cut(s)	33, 141, 299, 1190
Eco72I	CACGTG	1 cut(s)	1078
Eco88I	CYCGRG	1 cut(s)	732
EcoRII	CCWGG	3 cut(s)	298, 392, 783
EcoRV	GATATC	1 cut(s)	1209
EcoT14I	CCWWGG	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	558
Esp3I	CGTCTC	1 cut(s)	1196
FaeI	CATG	6 cut(s)	340, 656, 778, 859, 1219, 1269
FalI	AAGNNNNNCTT	4 cut(s)	381, 413, 515, 547
FatI	CATG	6 cut(s)	336, 652, 774, 855, 1215, 1265
FbaI	TGATCA	1 cut(s)	459
FblI	GTMKAC	1 cut(s)	1071
Fnu4HI	GCNGC	6 cut(s)	380, 402, 576, 588, 932, 1147
FokI	GGATG	4 cut(s)	52, 94, 632, 799
Fsp4HI	GCNGC	6 cut(s)	380, 402, 576, 588, 932, 1147
FspBI	CTAG	2 cut(s)	479, 935
GlaI	GCGC	2 cut(s)	887, 930
GluI	GCNGC	6 cut(s)	380, 402, 576, 588, 932, 1147
GsuI	CTGGAG	3 cut(s)	436, 594, 1220
HaeII	RGCGCY	1 cut(s)	889
HaeIII	GGCC	3 cut(s)	56, 223, 841
HgaI	GACGC	1 cut(s)	1187
HhaI	GCGC	2 cut(s)	888, 931
Hin1I	GRCGYC	1 cut(s)	1179
Hin1II	CATG	6 cut(s)	340, 656, 778, 859, 1219, 1269
Hin6I	GCGC	2 cut(s)	886, 929
HinP1I	GCGC	2 cut(s)	886, 929
HincII	GTYRAC	2 cut(s)	6, 1072
HindII	GTYRAC	2 cut(s)	6, 1072
HindIII	AAGCTT	3 cut(s)	488, 524, 896
HinfI	GANTC	7 cut(s)	32, 181, 238, 349, 728, 982, 997
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	4 cut(s)	6, 348, 502, 1072
Hpy188I	TCNGA	6 cut(s)	52, 70, 121, 243, 318, 433
Hpy188III	TCNNGA	3 cut(s)	98, 722, 1106
Hpy8I	GTNNAC	4 cut(s)	6, 348, 502, 1072
HpyAV	CCTTC	8 cut(s)	65, 215, 238, 383, 468, 659, 721, 853
HpyCH4III	ACNGT	2 cut(s)	286, 686
HpyCH4IV	ACGT	2 cut(s)	1077, 1242
HpyF10VI	GCNNNNNNNGC	8 cut(s)	53, 254, 398, 584, 707, 716, 860, 1046
HpyF3I	CTNAG	4 cut(s)	170, 357, 430, 843
HpySE526I	ACGT	2 cut(s)	1077, 1242
Hsp92I	GRCGYC	1 cut(s)	1179
Hsp92II	CATG	6 cut(s)	340, 656, 778, 859, 1219, 1269
HspAI	GCGC	2 cut(s)	886, 929
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	5 cut(s)	154, 163, 193, 459, 1132
LguI	GCTCTTC	1 cut(s)	1158
LmnI	GCTCC	1 cut(s)	67
Lsp1109I	GCAGC	6 cut(s)	391, 413, 587, 599, 943, 1133
LweI	GCATC	3 cut(s)	654, 841, 862
MaeI	CTAG	2 cut(s)	479, 935
MaeII	ACGT	2 cut(s)	1077, 1242
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	5 cut(s)	156, 165, 195, 461, 1134
MboI	GATC	5 cut(s)	154, 163, 193, 459, 1132
MflI	RGATCY	2 cut(s)	163, 193
MluCI	AATT	4 cut(s)	592, 804, 1097, 1101
MlyI	GAGTC	2 cut(s)	343, 976
MmeI	TCCRAC	3 cut(s)	393, 495, 1236
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	1 cut(s)	1100
MspR9I	CCNGG	3 cut(s)	300, 394, 785
MvaI	CCWGG	3 cut(s)	300, 394, 785
MwoI	GCNNNNNNNGC	8 cut(s)	53, 254, 398, 584, 707, 716, 860, 1046
NdeII	GATC	5 cut(s)	154, 163, 193, 459, 1132
NlaIII	CATG	6 cut(s)	340, 656, 778, 859, 1219, 1269
NlaIV	GGNNCC	1 cut(s)	962
PceI	AGGCCT	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	1158
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	5 cut(s)	32, 181, 238, 728, 997
PkrI	GCNGC	6 cut(s)	381, 403, 577, 589, 933, 1148
PleI	GAGTC	2 cut(s)	343, 976
PmaCI	CACGTG	1 cut(s)	1078
PmlI	CACGTG	1 cut(s)	1078
PpsI	GAGTC	2 cut(s)	343, 976
Ppu21I	YACGTR	2 cut(s)	1078, 1243
PshBI	ATTAAT	1 cut(s)	1100
PsiI	TTATAA	1 cut(s)	924
Psp6I	CCWGG	3 cut(s)	298, 392, 783
PspCI	CACGTG	1 cut(s)	1078
PspGI	CCWGG	3 cut(s)	298, 392, 783
PspN4I	GGNNCC	1 cut(s)	962
PspPI	GGNCC	1 cut(s)	839
PstI	CTGCAG	2 cut(s)	577, 1007
PstNI	CAGNNNCTG	1 cut(s)	869
PsuI	RGATCY	2 cut(s)	163, 193
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SalI	GTCGAC	1 cut(s)	1070
SapI	GCTCTTC	1 cut(s)	1158
SaqAI	TTAA	1 cut(s)	1100
SatI	GCNGC	6 cut(s)	380, 402, 576, 588, 932, 1147
Sau3AI	GATC	5 cut(s)	154, 163, 193, 459, 1132
Sau96I	GGNCC	1 cut(s)	839
ScaI	AGTACT	1 cut(s)	428
SchI	GAGTC	2 cut(s)	343, 976
ScrFI	CCNGG	3 cut(s)	300, 394, 785
SfaNI	GCATC	3 cut(s)	654, 841, 862
SfcI	CTRYAG	2 cut(s)	573, 1003
SmlI	CTYRAG	2 cut(s)	749, 1024
SmoI	CTYRAG	2 cut(s)	749, 1024
Sse9I	AATT	4 cut(s)	592, 804, 1097, 1101
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	1 cut(s)	829
SspMI	CTAG	2 cut(s)	479, 935
StuI	AGGCCT	1 cut(s)	223
StyD4I	CCNGG	3 cut(s)	298, 392, 783
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	2 cut(s)	286, 686
TaiI	ACGT	2 cut(s)	1080, 1245
TaqI	TCGA	2 cut(s)	35, 1071
TasI	AATT	4 cut(s)	592, 804, 1097, 1101
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	5 cut(s)	32, 181, 238, 728, 997
Tru1I	TTAA	1 cut(s)	1100
Tru9I	TTAA	1 cut(s)	1100
TscAI	CASTG	4 cut(s)	350, 573, 870, 1203
TseI	GCWGC	6 cut(s)	379, 401, 575, 587, 931, 1146
TspDTI	ATGAA	2 cut(s)	641, 872
TspGWI	ACGGA	1 cut(s)	1190
TspRI	CASTG	4 cut(s)	350, 573, 870, 1203
VspI	ATTAAT	1 cut(s)	1100
XcmI	CCANNNNNNNNNTGG	1 cut(s)	862
XmiI	GTMKAC	1 cut(s)	1071
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	2 cut(s)	479, 935
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.