26S proteasome non-atpase regulatory subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G29150 AT1G29150 |
| fragaria_vesca | FvH4_4g30750 |
| malus_domestica | MD13G1068400.v1.1 MD16G1067200.v1.1 |
| prunus_persica | Prupe.1G279500_v2.0.a1 |
| pyrus_communis | pycom13g06020 |
| rosa_chinensis | RchiOBHm_Chr4g0439141 RchiOBHm_Chr6g0255431 |
| rosa_laevigata | RLG00000006294 |
| rosa_multiflora | Rmu_sc0002236.1_g000002 Rmu_sc0027506.1_g000003 |
| rosa_roxburghii | Rroxscaffold_5G00380130 |
| rosa_rugosa | Rorug04G0316000 |
| rosa_samantha | Rh4AG366900 Rh4BG378400 Rh4CG392700 Rh4DG373000 |
| rosa_wichuraiana | Rw0G007510 Rw0G011720 Rw6G006640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 918 |
| AciI | CCGC | 2 cut(s) | 346, 863 |
| AclWI | GGATC | 5 cut(s) | 171, 201, 640, 653, 896 |
| AcuI | CTGAAG | 4 cut(s) | 90, 299, 312, 453 |
| AfaI | GTAC | 2 cut(s) | 297, 428 |
| AfeI | AGCGCT | 1 cut(s) | 438 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 219, 331 |
| AgsI | TTSAA | 7 cut(s) | 101, 232, 698, 707, 715, 725, 1019 |
| AjnI | CCWGG | 1 cut(s) | 298 |
| AleI | CACNNNNGTG | 1 cut(s) | 986 |
| AlwI | GGATC | 5 cut(s) | 171, 201, 640, 653, 896 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 290 |
| Ama87I | CYCGRG | 2 cut(s) | 732, 842 |
| Aor51HI | AGCGCT | 1 cut(s) | 438 |
| AoxI | GGCC | 5 cut(s) | 54, 221, 390, 823, 839 |
| ApaI | GGGCCC | 1 cut(s) | 843 |
| ApeKI | GCWGC | 7 cut(s) | 122, 343, 379, 401, 575, 587, 1130 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1058, 1090 |
| AspLEI | GCGC | 4 cut(s) | 366, 439, 888, 1108 |
| AspS9I | GGNCC | 3 cut(s) | 348, 839, 840 |
| AsuHPI | GGTGA | 2 cut(s) | 202, 790 |
| AvaI | CYCGRG | 2 cut(s) | 732, 842 |
| AvaII | GGWCC | 1 cut(s) | 348 |
| AxyI | CCTNAGG | 2 cut(s) | 170, 374 |
| BaeGI | GKGCMC | 1 cut(s) | 843 |
| BamHI | GGATCC | 1 cut(s) | 645 |
| BanI | GGYRCC | 1 cut(s) | 918 |
| BanII | GRGCYC | 2 cut(s) | 843, 1101 |
| BbvCI | CCTCAGC | 1 cut(s) | 218 |
| BbvI | GCAGC | 7 cut(s) | 134, 330, 391, 413, 587, 599, 1142 |
| BccI | CCATC | 3 cut(s) | 73, 83, 406 |
| BceAI | ACGGC | 1 cut(s) | 722 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 833, 867 |
| BciT130I | CCWGG | 1 cut(s) | 300 |
| BclI | TGATCA | 1 cut(s) | 459 |
| BfaI | CTAG | 1 cut(s) | 893 |
| BfmI | CTRYAG | 6 cut(s) | 120, 627, 827, 961, 1086, 1128 |
| BfoI | RGCGCY | 3 cut(s) | 440, 889, 1109 |
| BglII | AGATCT | 1 cut(s) | 1184 |
| BisI | GCNGC | 7 cut(s) | 123, 344, 380, 402, 576, 588, 1131 |
| BlsI | GCNGC | 7 cut(s) | 124, 345, 381, 403, 577, 589, 1132 |
| BmcAI | AGTACT | 1 cut(s) | 428 |
| Bme1390I | CCNGG | 1 cut(s) | 300 |
| Bme18I | GGWCC | 1 cut(s) | 348 |
| BmeT110I | CYCGRG | 2 cut(s) | 732, 842 |
| BmgT120I | GGNCC | 3 cut(s) | 348, 839, 840 |
| BmiI | GGNNCC | 4 cut(s) | 350, 647, 841, 920 |
| BmrFI | CCNGG | 1 cut(s) | 300 |
| BmsI | GCATC | 3 cut(s) | 271, 841, 862 |
| BpmI | CTGGAG | 1 cut(s) | 594 |
| Bpu10I | CCTNAGC | 2 cut(s) | 42, 218 |
| BpuEI | CTTGAG | 2 cut(s) | 734, 1085 |
| Bsa29I | ATCGAT | 1 cut(s) | 35 |
| BsaJI | CCNNGG | 2 cut(s) | 268, 558 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 219, 331 |
| Bse1I | ACTGG | 1 cut(s) | 393 |
| Bse21I | CCTNAGG | 2 cut(s) | 170, 374 |
| BseBI | CCWGG | 1 cut(s) | 300 |
| BseCI | ATCGAT | 1 cut(s) | 35 |
| BseDI | CCNNGG | 2 cut(s) | 268, 558 |
| BseGI | GGATG | 1 cut(s) | 856 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 219, 331 |
| BseMII | CTCAG | 4 cut(s) | 56, 209, 348, 1067 |
| BseNI | ACTGG | 1 cut(s) | 393 |
| BseRI | GAGGAG | 1 cut(s) | 916 |
| BseSI | GKGCMC | 1 cut(s) | 843 |
| BseXI | GCAGC | 7 cut(s) | 134, 330, 391, 413, 587, 599, 1142 |
| BseYI | CCCAGC | 1 cut(s) | 213 |
| BshFI | GGCC | 5 cut(s) | 56, 223, 392, 825, 841 |
| BshNI | GGYRCC | 1 cut(s) | 918 |
| BshVI | ATCGAT | 1 cut(s) | 35 |
| BsiHKCI | CYCGRG | 2 cut(s) | 732, 842 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 219, 331 |
| BsnI | GGCC | 5 cut(s) | 56, 223, 392, 825, 841 |
| BsoBI | CYCGRG | 2 cut(s) | 732, 842 |
| Bsp120I | GGGCCC | 1 cut(s) | 839 |
| Bsp1286I | GDGCHC | 2 cut(s) | 843, 1101 |
| Bsp143I | GATC | 8 cut(s) | 163, 193, 310, 459, 645, 901, 1090, 1184 |
| BspACI | CCGC | 2 cut(s) | 346, 863 |
| BspANI | GGCC | 5 cut(s) | 56, 223, 392, 825, 841 |
| BspCNI | CTCAG | 4 cut(s) | 55, 210, 349, 1066 |
| BspDI | ATCGAT | 1 cut(s) | 35 |
| BspLI | GGNNCC | 4 cut(s) | 350, 647, 841, 920 |
| BspMAI | CTGCAG | 2 cut(s) | 124, 1132 |
| BspPI | GGATC | 5 cut(s) | 171, 201, 640, 653, 896 |
| BspQI | GCTCTTC | 1 cut(s) | 411 |
| BspT107I | GGYRCC | 1 cut(s) | 918 |
| BsrI | ACTGG | 1 cut(s) | 393 |
| BssECI | CCNNGG | 2 cut(s) | 268, 558 |
| BssMI | GATC | 8 cut(s) | 163, 193, 310, 459, 645, 901, 1090, 1184 |
| BssT1I | CCWWGG | 1 cut(s) | 558 |
| Bst2UI | CCWGG | 1 cut(s) | 300 |
| Bst4CI | ACNGT | 3 cut(s) | 92, 265, 831 |
| Bst6I | CTCTTC | 1 cut(s) | 411 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 254 |
| BstC8I | GCNNGC | 3 cut(s) | 186, 823, 890 |
| BstDEI | CTNAG | 6 cut(s) | 42, 170, 218, 357, 374, 1053 |
| BstDSI | CCRYGG | 1 cut(s) | 268 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 329 |
| BstF5I | GGATG | 1 cut(s) | 856 |
| BstH2I | RGCGCY | 3 cut(s) | 440, 889, 1109 |
| BstHHI | GCGC | 4 cut(s) | 366, 439, 888, 1108 |
| BstKTI | GATC | 8 cut(s) | 166, 196, 313, 462, 648, 904, 1093, 1187 |
| BstMBI | GATC | 8 cut(s) | 163, 193, 310, 459, 645, 901, 1090, 1184 |
| BstNI | CCWGG | 1 cut(s) | 300 |
| BstSCI | CCNGG | 1 cut(s) | 298 |
| BstSFI | CTRYAG | 6 cut(s) | 120, 627, 827, 961, 1086, 1128 |
| BstSLI | GKGCMC | 1 cut(s) | 843 |
| BstV1I | GCAGC | 7 cut(s) | 134, 330, 391, 413, 587, 599, 1142 |
| BstX2I | RGATCY | 5 cut(s) | 163, 193, 645, 901, 1184 |
| BstYI | RGATCY | 5 cut(s) | 163, 193, 645, 901, 1184 |
| Bsu15I | ATCGAT | 1 cut(s) | 35 |
| Bsu36I | CCTNAGG | 2 cut(s) | 170, 374 |
| BsuRI | GGCC | 5 cut(s) | 56, 223, 392, 825, 841 |
| BsuTUI | ATCGAT | 1 cut(s) | 35 |
| BtgI | CCRYGG | 1 cut(s) | 268 |
| BtsCI | GGATG | 1 cut(s) | 856 |
| Cac8I | GCNNGC | 3 cut(s) | 186, 823, 890 |
| CaiI | CAGNNNCTG | 1 cut(s) | 290 |
| CfoI | GCGC | 4 cut(s) | 366, 439, 888, 1108 |
| Cfr13I | GGNCC | 3 cut(s) | 348, 839, 840 |
| ClaI | ATCGAT | 1 cut(s) | 35 |
| Csp6I | GTAC | 2 cut(s) | 296, 427 |
| CviAII | CATG | 6 cut(s) | 176, 785, 856, 1034, 1153, 1200 |
| CviQI | GTAC | 2 cut(s) | 296, 427 |
| DdeI | CTNAG | 6 cut(s) | 42, 170, 218, 357, 374, 1053 |
| DpnI | GATC | 8 cut(s) | 165, 195, 312, 461, 647, 903, 1092, 1186 |
| DpnII | GATC | 8 cut(s) | 163, 193, 310, 459, 645, 901, 1090, 1184 |
| Eam1104I | CTCTTC | 1 cut(s) | 411 |
| EarI | CTCTTC | 1 cut(s) | 411 |
| Eco130I | CCWWGG | 1 cut(s) | 558 |
| Eco147I | AGGCCT | 2 cut(s) | 223, 825 |
| Eco24I | GRGCYC | 2 cut(s) | 843, 1101 |
| Eco47I | GGWCC | 1 cut(s) | 348 |
| Eco47III | AGCGCT | 1 cut(s) | 438 |
| Eco57I | CTGAAG | 4 cut(s) | 90, 299, 312, 453 |
| Eco81I | CCTNAGG | 2 cut(s) | 170, 374 |
| Eco88I | CYCGRG | 2 cut(s) | 732, 842 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 329 |
| EcoO109I | RGGNCCY | 1 cut(s) | 839 |
| EcoRII | CCWGG | 1 cut(s) | 298 |
| EcoT14I | CCWWGG | 1 cut(s) | 558 |
| EcoT38I | GRGCYC | 2 cut(s) | 843, 1101 |
| ErhI | CCWWGG | 1 cut(s) | 558 |
| FaeI | CATG | 6 cut(s) | 179, 788, 859, 1037, 1156, 1203 |
| FatI | CATG | 6 cut(s) | 175, 784, 855, 1033, 1152, 1199 |
| FbaI | TGATCA | 1 cut(s) | 459 |
| Fnu4HI | GCNGC | 7 cut(s) | 123, 344, 380, 402, 576, 588, 1131 |
| FokI | GGATG | 1 cut(s) | 863 |
| FriOI | GRGCYC | 2 cut(s) | 843, 1101 |
| Fsp4HI | GCNGC | 7 cut(s) | 123, 344, 380, 402, 576, 588, 1131 |
| FspBI | CTAG | 1 cut(s) | 893 |
| GlaI | GCGC | 4 cut(s) | 365, 438, 887, 1107 |
| GluI | GCNGC | 7 cut(s) | 123, 344, 380, 402, 576, 588, 1131 |
| GsaI | CCCAGC | 1 cut(s) | 217 |
| GsuI | CTGGAG | 1 cut(s) | 594 |
| HaeII | RGCGCY | 3 cut(s) | 440, 889, 1109 |
| HaeIII | GGCC | 5 cut(s) | 56, 223, 392, 825, 841 |
| HhaI | GCGC | 4 cut(s) | 366, 439, 888, 1108 |
| Hin1II | CATG | 6 cut(s) | 179, 788, 859, 1037, 1156, 1203 |
| Hin6I | GCGC | 4 cut(s) | 364, 437, 886, 1106 |
| HinP1I | GCGC | 4 cut(s) | 364, 437, 886, 1106 |
| HindIII | AAGCTT | 1 cut(s) | 488 |
| HinfI | GANTC | 3 cut(s) | 32, 238, 728 |
| HphI | GGTGA | 2 cut(s) | 202, 790 |
| Hpy166II | GTNNAC | 1 cut(s) | 913 |
| Hpy188I | TCNGA | 7 cut(s) | 70, 310, 318, 411, 433, 658, 1056 |
| Hpy188III | TCNNGA | 3 cut(s) | 98, 722, 732 |
| Hpy8I | GTNNAC | 1 cut(s) | 913 |
| HpyAV | CCTTC | 4 cut(s) | 215, 468, 659, 721 |
| HpyCH4III | ACNGT | 3 cut(s) | 92, 265, 831 |
| HpyF3I | CTNAG | 6 cut(s) | 42, 170, 218, 357, 374, 1053 |
| Hsp92II | CATG | 6 cut(s) | 179, 788, 859, 1037, 1156, 1203 |
| HspAI | GCGC | 4 cut(s) | 364, 437, 886, 1106 |
| Ksp22I | TGATCA | 1 cut(s) | 459 |
| Kzo9I | GATC | 8 cut(s) | 163, 193, 310, 459, 645, 901, 1090, 1184 |
| LguI | GCTCTTC | 1 cut(s) | 411 |
| LmnI | GCTCC | 1 cut(s) | 531 |
| Lsp1109I | GCAGC | 7 cut(s) | 134, 330, 391, 413, 587, 599, 1142 |
| LweI | GCATC | 3 cut(s) | 271, 841, 862 |
| MaeI | CTAG | 1 cut(s) | 893 |
| MaeIII | GTNAC | 2 cut(s) | 200, 686 |
| MalI | GATC | 8 cut(s) | 165, 195, 312, 461, 647, 903, 1092, 1186 |
| MboI | GATC | 8 cut(s) | 163, 193, 310, 459, 645, 901, 1090, 1184 |
| MfeI | CAATTG | 1 cut(s) | 906 |
| MflI | RGATCY | 5 cut(s) | 163, 193, 645, 901, 1184 |
| MhlI | GDGCHC | 2 cut(s) | 843, 1101 |
| MluCI | AATT | 5 cut(s) | 24, 153, 592, 906, 1046 |
| MmeI | TCCRAC | 1 cut(s) | 1116 |
| MslI | CAYNNNNRTG | 2 cut(s) | 789, 986 |
| MspA1I | CMGCKG | 1 cut(s) | 217 |
| MspR9I | CCNGG | 1 cut(s) | 300 |
| MunI | CAATTG | 1 cut(s) | 906 |
| MvaI | CCWGG | 1 cut(s) | 300 |
| NdeII | GATC | 8 cut(s) | 163, 193, 310, 459, 645, 901, 1090, 1184 |
| NlaIII | CATG | 6 cut(s) | 179, 788, 859, 1037, 1156, 1203 |
| NlaIV | GGNNCC | 4 cut(s) | 350, 647, 841, 920 |
| OliI | CACNNNNGTG | 1 cut(s) | 986 |
| PaeR7I | CTCGAG | 1 cut(s) | 732 |
| PceI | AGGCCT | 2 cut(s) | 223, 825 |
| PciSI | GCTCTTC | 1 cut(s) | 411 |
| PfeI | GAWTC | 3 cut(s) | 32, 238, 728 |
| PkrI | GCNGC | 7 cut(s) | 124, 345, 381, 403, 577, 589, 1132 |
| Psp6I | CCWGG | 1 cut(s) | 298 |
| PspFI | CCCAGC | 1 cut(s) | 213 |
| PspGI | CCWGG | 1 cut(s) | 298 |
| PspN4I | GGNNCC | 4 cut(s) | 350, 647, 841, 920 |
| PspOMI | GGGCCC | 1 cut(s) | 839 |
| PspPI | GGNCC | 3 cut(s) | 348, 839, 840 |
| PstI | CTGCAG | 2 cut(s) | 124, 1132 |
| PstNI | CAGNNNCTG | 1 cut(s) | 290 |
| PsuI | RGATCY | 5 cut(s) | 163, 193, 645, 901, 1184 |
| PvuII | CAGCTG | 1 cut(s) | 217 |
| RsaI | GTAC | 2 cut(s) | 297, 428 |
| RsaNI | GTAC | 2 cut(s) | 296, 427 |
| RseI | CAYNNNNRTG | 2 cut(s) | 789, 986 |
| SapI | GCTCTTC | 1 cut(s) | 411 |
| SatI | GCNGC | 7 cut(s) | 123, 344, 380, 402, 576, 588, 1131 |
| Sau3AI | GATC | 8 cut(s) | 163, 193, 310, 459, 645, 901, 1090, 1184 |
| Sau96I | GGNCC | 3 cut(s) | 348, 839, 840 |
| ScaI | AGTACT | 1 cut(s) | 428 |
| ScrFI | CCNGG | 1 cut(s) | 300 |
| SduI | GDGCHC | 2 cut(s) | 843, 1101 |
| SfaNI | GCATC | 3 cut(s) | 271, 841, 862 |
| SfcI | CTRYAG | 6 cut(s) | 120, 627, 827, 961, 1086, 1128 |
| Sfr274I | CTCGAG | 1 cut(s) | 732 |
| SinI | GGWCC | 1 cut(s) | 348 |
| SlaI | CTCGAG | 1 cut(s) | 732 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 789, 986 |
| SmlI | CTYRAG | 3 cut(s) | 732, 749, 1100 |
| SmoI | CTYRAG | 3 cut(s) | 732, 749, 1100 |
| Sse9I | AATT | 5 cut(s) | 24, 153, 592, 906, 1046 |
| SseBI | AGGCCT | 2 cut(s) | 223, 825 |
| SsiI | CCGC | 2 cut(s) | 346, 863 |
| SspI | AATATT | 1 cut(s) | 445 |
| SspMI | CTAG | 1 cut(s) | 893 |
| StuI | AGGCCT | 2 cut(s) | 223, 825 |
| StyD4I | CCNGG | 1 cut(s) | 298 |
| StyI | CCWWGG | 1 cut(s) | 558 |
| TaaI | ACNGT | 3 cut(s) | 92, 265, 831 |
| TaqI | TCGA | 3 cut(s) | 35, 733, 1029 |
| TasI | AATT | 5 cut(s) | 24, 153, 592, 906, 1046 |
| TatI | WGTACW | 1 cut(s) | 426 |
| TfiI | GAWTC | 3 cut(s) | 32, 238, 728 |
| TseI | GCWGC | 7 cut(s) | 122, 343, 379, 401, 575, 587, 1130 |
| TspDTI | ATGAA | 4 cut(s) | 192, 525, 641, 872 |
| TspGWI | ACGGA | 1 cut(s) | 257 |
| VpaK11BI | GGWCC | 1 cut(s) | 348 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 329 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 862, 1150 |
| XhoI | CTCGAG | 1 cut(s) | 732 |
| XspI | CTAG | 1 cut(s) | 893 |
| ZrmI | AGTACT | 1 cut(s) | 428 |