Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009973

Physical Location & Seq

Genomic Coordinates Forward (+)

10750290 .. 10751895

Gene Structure 1606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22909

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTCTTCAGCATACCTCCCTGCAATTACTGAATCGATTGCTCAGGCTTTAGAGGCCAAATCTCCATCTGAAGCCATCTCTATTATTTACCGTGTTCTTGAAAACCCGTCATCTTCTTCTACAGCTCTACAAATAAAGGAACAGGCTATAACAATTTTTTTGGATCTCCTTAGGCATGAAAAGCGAGCAGAAGATCTCTGTAACCTTCTCACCCAGCTGAGGCCTTTCTTCAACTTGATTCCAAAGGCAAAGACTGCAAAGACTGTCCGTGGCATTATTGATACGGTAGCTGAATGGACCCGTGCTGAGAAGCGCACTTTCCTTCGGCAGCGAGTGGAGGCCAGACTTGCAGCTCTTCTGATGGATAGCATGGAGTACTCTGAAGTACTAAATCTTTTATCAGGCTTGATCAAGGAAGTGAGAAGGCTTGATGACAAGCTTCTTCTTGTTGATATAGATTTGTTAGAAAGTAAGCTCCATTTTTCATTGAGAAATCTTCCTAAAGCCAAGGCTTTACTCACAGCAGCGAGAACAGCAGCCAATTCTATATATGTTCCTCCAGCTCAACAAGGAACTATAGATTTGCGGAGTGGGATCCTTCATGCCGAAGAAAAGGACTACAAAACTGCTTATAGTTACTTCTTTGAAGCATTTGAAGCCTTCAATGCTCTTGAAGATTCTCGAGCCGTGTTTAGCCTCAAGTATATGTTGCTTTGCAAGATTATGGTGAGCCATGCAGATGATATTGCAGGAATAATATCATCTAAAGCAGGCCTACGGTATGTAGGGCCCGAGCTGGATGCCATGAAAACGCTAGACGAAGATCCAATTGTCCACAGGCACCTCTCCTCTCTGTATGACACTCTCTTGGAACAAAACCTCTGTAGATTGATTGAGCCTTACACAAGGGTGGAGATTGCTTATATTGCAGAGCTGATTGAACTGCCTATCGACCAGGTGGAGAAGAAATTATCTCAGATGATTTTAGACAAGAAGTTTGCTGGAACTTTAGATCAAGGCGCTGGCTGCCTCATCATTTTTGAGGATATCAAGACAGGTGCTATATACTCTGCAGCGTTGGAAACCATATCTAACATGGAAAAGGTTGTGGATAGCCTCTATGTGAGATCTGCCAGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005911 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0016043 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030054 GO:0030154 GO:0030163 GO:0032502 GO:0032991 GO:0034622 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048863 GO:0048869 GO:0050896 GO:0051603 GO:0055044 GO:0065003 GO:0071704 GO:0071840 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PCI

Protein Analysis

380

Amino Acids

42.66

Weight (kDa)

5.7

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN6_N	PF18055	14 - 97	6.9e-16	26S proteasome regulatory subunit RPN6 N-terminal domain
PCI	PF01399	271 - 347	2.8e-20	PCI domain
RPN6_C_helix	PF18503	354 - 378	6.5e-09	26S proteasome subunit RPN6 C-terminal helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29150 AT1G29150
fragaria_vesca	FvH4_4g30750
malus_domestica	MD13G1068400.v1.1 MD16G1067200.v1.1
prunus_persica	Prupe.1G279500_v2.0.a1
pyrus_communis	pycom13g06020
rosa_chinensis	RchiOBHm_Chr4g0439141 RchiOBHm_Chr6g0255431
rosa_laevigata	RLG00000006294
rosa_multiflora	Rmu_sc0002236.1_g000002 Rmu_sc0027506.1_g000003
rosa_roxburghii	Rroxscaffold_5G00380130
rosa_rugosa	Rorug04G0316000
rosa_samantha	Rh4AG366900 Rh4BG378400 Rh4CG392700 Rh4DG373000
rosa_wichuraiana	Rw0G007510 Rw0G011720 Rw6G006640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	840
AciI	CCGC	1 cut(s)	586
AclWI	GGATC	4 cut(s)	171, 589, 602, 818
AcuI	CTGAAG	2 cut(s)	90, 402
AfaI	GTAC	2 cut(s)	377, 387
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	7 cut(s)	101, 232, 647, 656, 664, 674, 941
AjnI	CCWGG	1 cut(s)	954
AleI	CACNNNNGTG	1 cut(s)	908
AluBI	AGCT	9 cut(s)	125, 217, 290, 353, 439, 475, 563, 796, 934
AluI	AGCT	9 cut(s)	125, 217, 290, 353, 439, 475, 563, 796, 934
AlwI	GGATC	4 cut(s)	171, 589, 602, 818
Ama87I	CYCGRG	2 cut(s)	681, 791
AoxI	GGCC	5 cut(s)	54, 221, 339, 772, 788
ApaI	GGGCCC	1 cut(s)	792
ApeKI	GCWGC	6 cut(s)	328, 350, 524, 536, 1026, 1073
ArsI	GACNNNNNNTTYG	2 cut(s)	980, 1012
AspLEI	GCGC	2 cut(s)	315, 1022
AspS9I	GGNCC	3 cut(s)	297, 788, 789
AsuHPI	GGTGA	2 cut(s)	202, 739
AvaI	CYCGRG	2 cut(s)	681, 791
AvaII	GGWCC	1 cut(s)	297
AxyI	CCTNAGG	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	792
BamHI	GGATCC	1 cut(s)	594
BanI	GGYRCC	1 cut(s)	840
BanII	GRGCYC	1 cut(s)	792
BbvCI	CCTCAGC	1 cut(s)	218
BbvI	GCAGC	6 cut(s)	340, 362, 536, 548, 1013, 1085
BccI	CCATC	3 cut(s)	73, 83, 355
BceAI	ACGGC	1 cut(s)	671
BcgI	CGANNNNNNTGC	2 cut(s)	782, 816
BciT130I	CCWGG	1 cut(s)	956
BclI	TGATCA	1 cut(s)	408
BfaI	CTAG	1 cut(s)	815
BfmI	CTRYAG	4 cut(s)	120, 576, 883, 1071
BfoI	RGCGCY	1 cut(s)	1023
BglII	AGATCT	2 cut(s)	193, 1127
BisI	GCNGC	6 cut(s)	329, 351, 525, 537, 1027, 1074
BlsI	GCNGC	6 cut(s)	330, 352, 526, 538, 1028, 1075
BmcAI	AGTACT	2 cut(s)	377, 387
Bme1390I	CCNGG	1 cut(s)	956
Bme18I	GGWCC	1 cut(s)	297
BmeT110I	CYCGRG	2 cut(s)	681, 791
BmgT120I	GGNCC	3 cut(s)	297, 788, 789
BmiI	GGNNCC	4 cut(s)	299, 596, 790, 842
BmrFI	CCNGG	1 cut(s)	956
BmsI	GCATC	1 cut(s)	790
BpmI	CTGGAG	1 cut(s)	543
Bpu10I	CCTNAGC	2 cut(s)	42, 218
BpuEI	CTTGAG	1 cut(s)	683
Bsa29I	ATCGAT	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	268, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse21I	CCTNAGG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	956
BseCI	ATCGAT	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	268, 507
BseGI	GGATG	1 cut(s)	805
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMII	CTCAG	4 cut(s)	56, 209, 297, 989
BseRI	GAGGAG	1 cut(s)	838
BseSI	GKGCMC	1 cut(s)	792
BseXI	GCAGC	6 cut(s)	340, 362, 536, 548, 1013, 1085
BseYI	CCCAGC	1 cut(s)	213
BshFI	GGCC	5 cut(s)	56, 223, 341, 774, 790
BshNI	GGYRCC	1 cut(s)	840
BshVI	ATCGAT	1 cut(s)	35
BsiHKCI	CYCGRG	2 cut(s)	681, 791
BslI	CCNNNNNNNGG	1 cut(s)	219
BsnI	GGCC	5 cut(s)	56, 223, 341, 774, 790
BsoBI	CYCGRG	2 cut(s)	681, 791
Bsp120I	GGGCCC	1 cut(s)	788
Bsp1286I	GDGCHC	1 cut(s)	792
Bsp143I	GATC	7 cut(s)	163, 193, 408, 594, 823, 1012, 1127
BspACI	CCGC	1 cut(s)	586
BspANI	GGCC	5 cut(s)	56, 223, 341, 774, 790
BspCNI	CTCAG	4 cut(s)	55, 210, 298, 988
BspDI	ATCGAT	1 cut(s)	35
BspLI	GGNNCC	4 cut(s)	299, 596, 790, 842
BspMAI	CTGCAG	1 cut(s)	1075
BspPI	GGATC	4 cut(s)	171, 589, 602, 818
BspQI	GCTCTTC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	840
BssECI	CCNNGG	2 cut(s)	268, 507
BssMI	GATC	7 cut(s)	163, 193, 408, 594, 823, 1012, 1127
BssT1I	CCWWGG	1 cut(s)	507
Bst2UI	CCWGG	1 cut(s)	956
Bst4CI	ACNGT	4 cut(s)	92, 265, 286, 780
Bst6I	CTCTTC	1 cut(s)	360
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstC8I	GCNNGC	3 cut(s)	186, 772, 1024
BstDEI	CTNAG	5 cut(s)	42, 170, 218, 306, 975
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	805
BstH2I	RGCGCY	1 cut(s)	1023
BstHHI	GCGC	2 cut(s)	315, 1022
BstKTI	GATC	7 cut(s)	166, 196, 411, 597, 826, 1015, 1130
BstMBI	GATC	7 cut(s)	163, 193, 408, 594, 823, 1012, 1127
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 181, 254, 347, 533, 656, 665, 926, 1026
BstNI	CCWGG	1 cut(s)	956
BstSCI	CCNGG	1 cut(s)	954
BstSFI	CTRYAG	4 cut(s)	120, 576, 883, 1071
BstSLI	GKGCMC	1 cut(s)	792
BstV1I	GCAGC	6 cut(s)	340, 362, 536, 548, 1013, 1085
BstX2I	RGATCY	5 cut(s)	163, 193, 594, 823, 1127
BstYI	RGATCY	5 cut(s)	163, 193, 594, 823, 1127
Bsu15I	ATCGAT	1 cut(s)	35
Bsu36I	CCTNAGG	1 cut(s)	170
BsuRI	GGCC	5 cut(s)	56, 223, 341, 774, 790
BsuTUI	ATCGAT	1 cut(s)	35
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	805
Cac8I	GCNNGC	3 cut(s)	186, 772, 1024
CfoI	GCGC	2 cut(s)	315, 1022
Cfr13I	GGNCC	3 cut(s)	297, 788, 789
ClaI	ATCGAT	1 cut(s)	35
CsiI	ACCWGGT	1 cut(s)	954
Csp6I	GTAC	2 cut(s)	376, 386
CviAII	CATG	6 cut(s)	176, 370, 602, 734, 805, 1096
CviQI	GTAC	2 cut(s)	376, 386
DdeI	CTNAG	5 cut(s)	42, 170, 218, 306, 975
DpnI	GATC	7 cut(s)	165, 195, 410, 596, 825, 1014, 1129
DpnII	GATC	7 cut(s)	163, 193, 408, 594, 823, 1012, 1127
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	507
Eco147I	AGGCCT	2 cut(s)	223, 774
Eco24I	GRGCYC	1 cut(s)	792
Eco32I	GATATC	1 cut(s)	1048
Eco47I	GGWCC	1 cut(s)	297
Eco57I	CTGAAG	2 cut(s)	90, 402
Eco81I	CCTNAGG	1 cut(s)	170
Eco88I	CYCGRG	2 cut(s)	681, 791
EcoO109I	RGGNCCY	1 cut(s)	788
EcoRII	CCWGG	1 cut(s)	954
EcoRV	GATATC	1 cut(s)	1048
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	792
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	6 cut(s)	179, 373, 605, 737, 808, 1099
FatI	CATG	6 cut(s)	175, 369, 601, 733, 804, 1095
FbaI	TGATCA	1 cut(s)	408
Fnu4HI	GCNGC	6 cut(s)	329, 351, 525, 537, 1027, 1074
FokI	GGATG	1 cut(s)	812
FriOI	GRGCYC	1 cut(s)	792
Fsp4HI	GCNGC	6 cut(s)	329, 351, 525, 537, 1027, 1074
FspBI	CTAG	1 cut(s)	815
GlaI	GCGC	2 cut(s)	314, 1021
GluI	GCNGC	6 cut(s)	329, 351, 525, 537, 1027, 1074
GsaI	CCCAGC	1 cut(s)	217
GsuI	CTGGAG	1 cut(s)	543
HaeII	RGCGCY	1 cut(s)	1023
HaeIII	GGCC	5 cut(s)	56, 223, 341, 774, 790
HhaI	GCGC	2 cut(s)	315, 1022
Hin1II	CATG	6 cut(s)	179, 373, 605, 737, 808, 1099
Hin6I	GCGC	2 cut(s)	313, 1020
HinP1I	GCGC	2 cut(s)	313, 1020
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	3 cut(s)	32, 238, 677
HphI	GGTGA	2 cut(s)	202, 739
Hpy166II	GTNNAC	1 cut(s)	835
Hpy188I	TCNGA	4 cut(s)	70, 360, 382, 978
Hpy188III	TCNNGA	4 cut(s)	98, 671, 681, 1051
Hpy8I	GTNNAC	1 cut(s)	835
HpyAV	CCTTC	5 cut(s)	215, 332, 417, 608, 670
HpyCH4III	ACNGT	4 cut(s)	92, 265, 286, 780
HpyCH4V	TGCA	8 cut(s)	23, 257, 350, 717, 737, 749, 929, 1073
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 181, 254, 347, 533, 656, 665, 926, 1026
HpyF3I	CTNAG	5 cut(s)	42, 170, 218, 306, 975
Hsp92II	CATG	6 cut(s)	179, 373, 605, 737, 808, 1099
HspAI	GCGC	2 cut(s)	313, 1020
Ksp22I	TGATCA	1 cut(s)	408
Kzo9I	GATC	7 cut(s)	163, 193, 408, 594, 823, 1012, 1127
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	480
Lsp1109I	GCAGC	6 cut(s)	340, 362, 536, 548, 1013, 1085
LweI	GCATC	1 cut(s)	790
MabI	ACCWGGT	1 cut(s)	954
MaeI	CTAG	1 cut(s)	815
MaeIII	GTNAC	2 cut(s)	200, 635
MalI	GATC	7 cut(s)	165, 195, 410, 596, 825, 1014, 1129
MboI	GATC	7 cut(s)	163, 193, 408, 594, 823, 1012, 1127
MfeI	CAATTG	1 cut(s)	828
MflI	RGATCY	5 cut(s)	163, 193, 594, 823, 1127
MhlI	GDGCHC	1 cut(s)	792
MluCI	AATT	5 cut(s)	24, 153, 541, 828, 968
MmeI	TCCRAC	1 cut(s)	1059
MslI	CAYNNNNRTG	2 cut(s)	738, 908
MspA1I	CMGCKG	1 cut(s)	217
MspR9I	CCNGG	1 cut(s)	956
MunI	CAATTG	1 cut(s)	828
MvaI	CCWGG	1 cut(s)	956
MwoI	GCNNNNNNNGC	9 cut(s)	53, 181, 254, 347, 533, 656, 665, 926, 1026
NdeII	GATC	7 cut(s)	163, 193, 408, 594, 823, 1012, 1127
NlaIII	CATG	6 cut(s)	179, 373, 605, 737, 808, 1099
NlaIV	GGNNCC	4 cut(s)	299, 596, 790, 842
OliI	CACNNNNGTG	1 cut(s)	908
PaeR7I	CTCGAG	1 cut(s)	681
PceI	AGGCCT	2 cut(s)	223, 774
PciSI	GCTCTTC	1 cut(s)	360
PfeI	GAWTC	3 cut(s)	32, 238, 677
PkrI	GCNGC	6 cut(s)	330, 352, 526, 538, 1028, 1075
Psp6I	CCWGG	1 cut(s)	954
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	954
PspN4I	GGNNCC	4 cut(s)	299, 596, 790, 842
PspOMI	GGGCCC	1 cut(s)	788
PspPI	GGNCC	3 cut(s)	297, 788, 789
PstI	CTGCAG	1 cut(s)	1075
PsuI	RGATCY	5 cut(s)	163, 193, 594, 823, 1127
PvuII	CAGCTG	1 cut(s)	217
RsaI	GTAC	2 cut(s)	377, 387
RsaNI	GTAC	2 cut(s)	376, 386
RseI	CAYNNNNRTG	2 cut(s)	738, 908
SapI	GCTCTTC	1 cut(s)	360
SatI	GCNGC	6 cut(s)	329, 351, 525, 537, 1027, 1074
Sau3AI	GATC	7 cut(s)	163, 193, 408, 594, 823, 1012, 1127
Sau96I	GGNCC	3 cut(s)	297, 788, 789
ScaI	AGTACT	2 cut(s)	377, 387
ScrFI	CCNGG	1 cut(s)	956
SduI	GDGCHC	1 cut(s)	792
SexAI	ACCWGGT	1 cut(s)	954
SfaNI	GCATC	1 cut(s)	790
SfcI	CTRYAG	4 cut(s)	120, 576, 883, 1071
Sfr274I	CTCGAG	1 cut(s)	681
SinI	GGWCC	1 cut(s)	297
SlaI	CTCGAG	1 cut(s)	681
SmiMI	CAYNNNNRTG	2 cut(s)	738, 908
SmlI	CTYRAG	2 cut(s)	681, 698
SmoI	CTYRAG	2 cut(s)	681, 698
Sse9I	AATT	5 cut(s)	24, 153, 541, 828, 968
SseBI	AGGCCT	2 cut(s)	223, 774
SsiI	CCGC	1 cut(s)	586
SspMI	CTAG	1 cut(s)	815
StuI	AGGCCT	2 cut(s)	223, 774
StyD4I	CCNGG	1 cut(s)	954
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	4 cut(s)	92, 265, 286, 780
TaqI	TCGA	3 cut(s)	35, 682, 951
TasI	AATT	5 cut(s)	24, 153, 541, 828, 968
TatI	WGTACW	2 cut(s)	375, 385
TfiI	GAWTC	3 cut(s)	32, 238, 677
TseI	GCWGC	6 cut(s)	328, 350, 524, 536, 1026, 1073
TspDTI	ATGAA	4 cut(s)	192, 474, 590, 821
TspGWI	ACGGA	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	297
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1093
XhoI	CTCGAG	1 cut(s)	681
XspI	CTAG	1 cut(s)	815
ZrmI	AGTACT	2 cut(s)	377, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.