AT1G29270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012913
Physical Location & Seq
Forward (+)
10229808 .. 10231384
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29270.2

Sequence Viewer

Length: 468 bp
ATGGTGGCTAGTGAACAAAAGAAGAGGGCAAGCCAAGGGAAACCTCATTTTCTTAAAAATCTCACCCACTTTAAATTTAGTATACATGAACAGAGCATGGTTATTAGGGAAGCTCTTCTATACATAGCCATGCTCAAACTCGAGATAGAAGCTTTGCAGAGAGAATATGAAGATCTCAAGATTACCAAAAAAGAATCTTTGCACCAATTTCAGGAGGTGAAGGTAGAGAAGATTGGGGAAATGTTTCAAGTAAAAATAAAAAGTCCACGGGGAGAAAACAATCTTGTGAATATTCTTGAAGCATTTGAAGAAATGGGGTTGAATGTGGCTCAAGCAAGGGCATCATGCCTAGATTCATTTGCCATGGAAGCCATTGTTGCACCTCAATCCAAAGACAAGCTTTGTAGTGTGGATGATTTGACTCAAACTCTTGTCAAAGCTCTTGTCAAGCCAAGTGTCCCACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.61

Weight (kDa)

7.76

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-TF_ACT-like_plant PF22754 48 - 123 6.8e-17 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29270 AT1G29270
fragaria_vesca FvH4_3g07370 FvH4_3g07370
malus_domestica MD05G1295800.v1.1 MD10G1275900.v1.1
prunus_persica Prupe.4G066300_v2.0.a1
pyrus_communis pycom10g23060
rosa_chinensis RchiOBHm_Chr5g0011571
rosa_laevigata RLG00000031843
rosa_multiflora Rmu_sc0009001.1_g000010
rosa_roxburghii Rroxscaffold_1G00064920
rosa_rugosa Rorug04G0457600 Rorug04G0457700
rosa_samantha Rh5AG089400 Rh5CG098700 Rh5DG084700
rosa_wichuraiana Rw5G007770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 4 cut(s) 248, 299, 308, 322
AluBI AGCT 4 cut(s) 113, 152, 400, 440
AluI AGCT 4 cut(s) 113, 152, 400, 440
Ama87I CYCGRG 1 cut(s) 140
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 429, 461
Asp700I GAANNNNTTC 2 cut(s) 114, 243
AsuHPI GGTGA 2 cut(s) 55, 229
AvaI CYCGRG 1 cut(s) 140
BfaI CTAG 2 cut(s) 9, 350
BglII AGATCT 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 140
BmsI GCATC 1 cut(s) 350
BpuEI CTTGAG 2 cut(s) 161, 315
BsaJI CCNNGG 3 cut(s) 34, 266, 363
Bsc4I CCNNNNNNNGG 1 cut(s) 211
BseDI CCNNGG 3 cut(s) 34, 266, 363
BseGI GGATG 1 cut(s) 418
BseLI CCNNNNNNNGG 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 140
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 443
BsoBI CYCGRG 1 cut(s) 140
Bsp143I GATC 1 cut(s) 172
Bsp19I CCATGG 1 cut(s) 363
BspQI GCTCTTC 1 cut(s) 120
BssECI CCNNGG 3 cut(s) 34, 266, 363
BssMI GATC 1 cut(s) 172
BssNAI GTATAC 1 cut(s) 83
BssT1I CCWWGG 2 cut(s) 34, 363
Bst1107I GTATAC 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 465
Bst6I CTCTTC 2 cut(s) 17, 120
BstC8I GCNNGC 1 cut(s) 31
BstDSI CCRYGG 2 cut(s) 266, 363
BstF5I GGATG 1 cut(s) 418
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 2 cut(s) 368, 377
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BstZ17I GTATAC 1 cut(s) 83
BtgI CCRYGG 2 cut(s) 266, 363
BtsCI GGATG 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 461
Cac8I GCNNGC 1 cut(s) 31
CviAII CATG 5 cut(s) 86, 97, 130, 345, 364
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
DraI TTTAAA 1 cut(s) 73
Eam1104I CTCTTC 2 cut(s) 17, 120
EarI CTCTTC 2 cut(s) 17, 120
Eco130I CCWWGG 2 cut(s) 34, 363
Eco88I CYCGRG 1 cut(s) 140
EcoT14I CCWWGG 2 cut(s) 34, 363
ErhI CCWWGG 2 cut(s) 34, 363
FaeI CATG 5 cut(s) 89, 100, 133, 348, 367
FaiI YATR 9 cut(s) 83, 87, 98, 121, 125, 131, 168, 346, 365
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FaqI GGGAC 1 cut(s) 443
FatI CATG 5 cut(s) 85, 96, 129, 344, 363
FblI GTMKAC 1 cut(s) 82
FokI GGATG 1 cut(s) 425
FspBI CTAG 2 cut(s) 9, 350
Hin1II CATG 5 cut(s) 89, 100, 133, 348, 367
HindIII AAGCTT 2 cut(s) 150, 398
HinfI GANTC 3 cut(s) 194, 353, 421
HphI GGTGA 2 cut(s) 55, 229
Hpy166II GTNNAC 3 cut(s) 14, 83, 266
Hpy188III TCNNGA 4 cut(s) 142, 178, 212, 296
Hpy8I GTNNAC 3 cut(s) 14, 83, 266
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 465
HpyCH4V TGCA 3 cut(s) 157, 202, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 377
Hsp92II CATG 5 cut(s) 89, 100, 133, 348, 367
Kzo9I GATC 1 cut(s) 172
LguI GCTCTTC 1 cut(s) 120
LpnPI CCDG 1 cut(s) 197
LweI GCATC 1 cut(s) 350
MaeI CTAG 2 cut(s) 9, 350
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 5 cut(s) 34, 107, 182, 241, 320
MflI RGATCY 1 cut(s) 172
MluCI AATT 2 cut(s) 74, 206
MlyI GAGTC 1 cut(s) 415
MnlI CCTC 4 cut(s) 18, 54, 208, 393
MroXI GAANNNNTTC 2 cut(s) 114, 243
MseI TTAA 2 cut(s) 54, 72
MslI CAYNNNNRTG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 368, 377
NcoI CCATGG 1 cut(s) 363
NdeII GATC 1 cut(s) 172
NlaIII CATG 5 cut(s) 89, 100, 133, 348, 367
PaeR7I CTCGAG 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 120
PdmI GAANNNNTTC 2 cut(s) 114, 243
PfeI GAWTC 2 cut(s) 194, 353
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
PsuI RGATCY 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 128
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 54, 72
Sau3AI GATC 1 cut(s) 172
SchI GAGTC 1 cut(s) 415
SetI ASST 8 cut(s) 46, 115, 154, 219, 225, 385, 402, 442
SfaNI GCATC 1 cut(s) 350
Sfr274I CTCGAG 1 cut(s) 140
SlaI CTCGAG 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 3 cut(s) 140, 176, 330
SmoI CTYRAG 3 cut(s) 140, 176, 330
Sse9I AATT 2 cut(s) 74, 206
SspI AATATT 1 cut(s) 292
SspMI CTAG 2 cut(s) 9, 350
StyI CCWWGG 2 cut(s) 34, 363
TaaI ACNGT 1 cut(s) 465
TaqI TCGA 1 cut(s) 141
TasI AATT 2 cut(s) 74, 206
TfiI GAWTC 2 cut(s) 194, 353
Tru1I TTAA 2 cut(s) 54, 72
Tru9I TTAA 2 cut(s) 54, 72
TscAI CASTG 1 cut(s) 468
TspDTI ATGAA 3 cut(s) 102, 183, 345
TspRI CASTG 1 cut(s) 468
XapI RAATTY 1 cut(s) 74
XhoI CTCGAG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 82
XmnI GAANNNNTTC 2 cut(s) 114, 243
XspI CTAG 2 cut(s) 9, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.