MD05G1295800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0012913
Physical Location & Seq
Reverse (-)
43035605 .. 43036312
708 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1295800.v1.1.491

Sequence Viewer

Length: 498 bp
ATGGTCTCCGGGCTGCGGAAGAGAGTAGCATTGCGCCGAAAGCTTCAAATTCTAAGGAGCCTTACCAAGACAAAATCCGTCAAGAGGACCTCCATAGTCGTGGATGCTTTACCCCACATTTATATGCTGAAACTCAAGCTTGAAGAAGTCCACAGAGAGTACTCGCATCTCATGGCTATCAAGACAGATTACATAAACCTAATCAAACATCTTCAAGTCCGCGAGGAAGTGAAGGTAGAGAAGATTGAGAAAGGGTTTCATGTGAGAGTGAAGTGTGAGAAAGCAAAGGCCACTCTGGTTTCAGTTTTGGAGGTATTTGAAGAAATGGGTCTCAATGTTGTGCAAGCTAGAGTTTCATGCAACAACAATTTTTCTATGGAAGCCATTGCAGTTGTAGCTGATCACCAAAACCAAGAAAAGCTGGATGTGATAGTTGTGACACAGACAATACTTAGGGCCACCAAGATTAATCAAGATGGAAAGGAGACGCATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

19.0

Weight (kDa)

9.64

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-TF_ACT-like_plant PF22754 76 - 154 4.4e-21 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29270 AT1G29270
fragaria_vesca FvH4_3g07370 FvH4_3g07370
malus_domestica MD05G1295800.v1.1 MD10G1275900.v1.1
prunus_persica Prupe.4G066300_v2.0.a1
pyrus_communis pycom10g23060
rosa_chinensis RchiOBHm_Chr5g0011571
rosa_laevigata RLG00000031843
rosa_multiflora Rmu_sc0009001.1_g000010
rosa_roxburghii Rroxscaffold_1G00064920
rosa_rugosa Rorug04G0457600 Rorug04G0457700
rosa_samantha Rh5AG089400 Rh5CG098700 Rh5DG084700
rosa_wichuraiana Rw5G007770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 222
AciI CCGC 2 cut(s) 16, 220
AcsI RAATTY 1 cut(s) 48
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 2 cut(s) 15, 84
AgsI TTSAA 4 cut(s) 47, 143, 215, 320
AluBI AGCT 5 cut(s) 43, 139, 347, 398, 421
AluI AGCT 5 cut(s) 43, 139, 347, 398, 421
Alw26I GTCTC 3 cut(s) 10, 335, 479
AoxI GGCC 2 cut(s) 288, 456
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 48
AseI ATTAAT 1 cut(s) 468
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 87, 456
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 395
AvaII GGWCC 1 cut(s) 87
BccI CCATC 1 cut(s) 470
BclI TGATCA 1 cut(s) 400
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 3 cut(s) 10, 335, 479
BfaI CTAG 1 cut(s) 348
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 2 cut(s) 87, 456
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 2 cut(s) 94, 175
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 10
BsaI GGTCTC 2 cut(s) 10, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 84
Bse3DI GCAATG 2 cut(s) 29, 384
BseGI GGATG 2 cut(s) 109, 430
BseLI CCNNNNNNNGG 2 cut(s) 15, 84
BseMI GCAATG 2 cut(s) 29, 384
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 2 cut(s) 290, 458
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 2 cut(s) 15, 84
BsmAI GTCTC 3 cut(s) 10, 335, 479
BsmBI CGTCTC 1 cut(s) 479
BsnI GGCC 2 cut(s) 290, 458
Bso31I GGTCTC 2 cut(s) 10, 335
Bsp143I GATC 1 cut(s) 400
BspACI CCGC 2 cut(s) 16, 220
BspANI GGCC 2 cut(s) 290, 458
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 59
BspTNI GGTCTC 2 cut(s) 10, 335
BsrDI GCAATG 2 cut(s) 29, 384
BssMI GATC 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 53, 452
BstF5I GGATG 2 cut(s) 109, 430
BstFNI CGCG 1 cut(s) 222
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 1 cut(s) 403
BstMAI GTCTC 3 cut(s) 10, 335, 479
BstMBI GATC 1 cut(s) 400
BstMWI GCNNNNNNNGC 2 cut(s) 40, 395
BstSCI CCNGG 1 cut(s) 8
BstUI CGCG 1 cut(s) 222
BstXI CCANNNNNNTGG 1 cut(s) 100
BsuRI GGCC 2 cut(s) 290, 458
BtsCI GGATG 2 cut(s) 109, 430
Cac8I GCNNGC 1 cut(s) 345
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 87, 456
Csp6I GTAC 1 cut(s) 160
CviAII CATG 4 cut(s) 172, 260, 357, 491
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 2 cut(s) 53, 452
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco31I GGTCTC 2 cut(s) 10, 335
Eco47I GGWCC 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 479
FaeI CATG 4 cut(s) 175, 263, 360, 494
FaiI YATR 9 cut(s) 95, 123, 125, 173, 194, 261, 358, 377, 492
FatI CATG 4 cut(s) 171, 259, 356, 490
FbaI TGATCA 1 cut(s) 400
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 2 cut(s) 116, 437
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 14
HaeIII GGCC 2 cut(s) 290, 458
HapII CCGG 1 cut(s) 9
HhaI GCGC 1 cut(s) 36
Hin1II CATG 4 cut(s) 175, 263, 360, 494
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HindIII AAGCTT 2 cut(s) 41, 137
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 1 cut(s) 151
Hpy188III TCNNGA 3 cut(s) 82, 181, 473
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 226
HpyCH4V TGCA 3 cut(s) 343, 360, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 395
HpyF3I CTNAG 2 cut(s) 53, 452
Hsp92II CATG 4 cut(s) 175, 263, 360, 494
HspAI GCGC 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 1 cut(s) 400
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 3 cut(s) 22, 281, 407
LweI GCATC 2 cut(s) 94, 175
MaeI CTAG 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 436
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 5 cut(s) 31, 155, 203, 253, 332
MluCI AATT 2 cut(s) 48, 367
MnlI CCTC 4 cut(s) 78, 100, 217, 304
MseI TTAA 1 cut(s) 468
MslI CAYNNNNRTG 2 cut(s) 98, 122
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 10
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 40, 395
NciI CCSGG 1 cut(s) 10
NdeII GATC 1 cut(s) 400
NlaIII CATG 4 cut(s) 175, 263, 360, 494
NlaIV GGNNCC 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 436
PkrI GCNGC 1 cut(s) 15
PpuMI RGGWCCY 1 cut(s) 87
PshBI ATTAAT 1 cut(s) 468
Psp5II RGGWCCY 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 2 cut(s) 87, 456
PspPPI RGGWCCY 1 cut(s) 87
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 2 cut(s) 98, 122
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 2 cut(s) 87, 456
ScaI AGTACT 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 10
SetI ASST 9 cut(s) 45, 92, 141, 201, 237, 315, 349, 400, 423
SfaNI GCATC 2 cut(s) 94, 175
SinI GGWCC 1 cut(s) 87
SmiMI CAYNNNNRTG 2 cut(s) 98, 122
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 2 cut(s) 48, 367
SsiI CCGC 2 cut(s) 16, 220
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 8
TasI AATT 2 cut(s) 48, 367
TatI WGTACW 1 cut(s) 159
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 2 cut(s) 248, 345
TspGWI ACGGA 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 87
VspI ATTAAT 1 cut(s) 468
XapI RAATTY 1 cut(s) 48
XspI CTAG 1 cut(s) 348
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.