Prupe.4G066300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012913
Physical Location & Seq
Forward (+)
3200214 .. 3201455
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G066300.1

Sequence Viewer

Length: 477 bp
ATGGTTTCCGGGCTTCAGAAGAGAGAACCATTGCGCCGAAAGCTTCAAAATCTAAGCAGCCTTACCAAGATGAATTCTGTCAAGAGGAGCTCCATTTTCATGGAGGCTTTGCTCCAGATTTACATGTTGAAACTCAAGCTTGAAGCAGTCCAAAGAGAGTACCTGCATCTCATGGCTCTTAAAACAGAATACTTAAACCTAATCAAACATTCTCAGATCCCCAAGGAAGTGAAGGTTGAGAAGATTGAGGAAGGGTTTCTTGTAAGAGTGAAGTGCGAGAATGCAGGAGACACTCTGGTTTCAGTTTTGGAAGCTTTTGAAGAAATGGGTCTTACTGTTCTGCAAGCTAGAATTTCAAGCAACAATTATTTTTCCATGGAGGCCATCGCTGTAGCTGAAAACCAAAACCAAGACCAGCTGGATGTGAGAGATATCACGCAAGCAATTACTAGGGCAACCGAGATTAATGGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.09

Weight (kDa)

7.84

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29270 AT1G29270
fragaria_vesca FvH4_3g07370 FvH4_3g07370
malus_domestica MD05G1295800.v1.1 MD10G1275900.v1.1
prunus_persica Prupe.4G066300_v2.0.a1
pyrus_communis pycom10g23060
rosa_chinensis RchiOBHm_Chr5g0011571
rosa_laevigata RLG00000031843
rosa_multiflora Rmu_sc0009001.1_g000010
rosa_roxburghii Rroxscaffold_1G00064920
rosa_rugosa Rorug04G0457600 Rorug04G0457700
rosa_samantha Rh5AG089400 Rh5CG098700 Rh5DG084700
rosa_wichuraiana Rw5G007770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 171
AclWI GGATC 1 cut(s) 211
AcsI RAATTY 2 cut(s) 73, 351
AfaI GTAC 1 cut(s) 161
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 5 cut(s) 47, 130, 143, 320, 357
AluBI AGCT 7 cut(s) 43, 90, 139, 314, 347, 395, 418
AluI AGCT 7 cut(s) 43, 90, 139, 314, 347, 395, 418
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 1 cut(s) 211
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 2 cut(s) 73, 351
AseI ATTAAT 1 cut(s) 465
Asp700I GAANNNNTTC 1 cut(s) 255
AspLEI GCGC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 10
BanII GRGCYC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 69
BccI CCATC 1 cut(s) 392
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 2 cut(s) 348, 450
BfmI CTRYAG 1 cut(s) 390
BfuAI ACCTGC 1 cut(s) 171
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 10
BmsI GCATC 1 cut(s) 175
BpmI CTGGAG 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 222, 375
Bse3DI GCAATG 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 222, 375
BseGI GGATG 1 cut(s) 427
BseMI GCAATG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 227
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 69
BshFI GGCC 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 9
BsmAI GTCTC 1 cut(s) 282
BsmI GAATGC 1 cut(s) 286
BsnI GGCC 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 216
Bsp19I CCATGG 1 cut(s) 375
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 171
BspPI GGATC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 29
BssECI CCNNGG 2 cut(s) 222, 375
BssMI GATC 1 cut(s) 216
BssT1I CCWWGG 2 cut(s) 222, 375
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 345, 441
BstDEI CTNAG 2 cut(s) 53, 213
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 1 cut(s) 427
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 8
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 216
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 1 cut(s) 216
BsuRI GGCC 1 cut(s) 383
BtgI CCRYGG 1 cut(s) 375
BtgZI GCGATG 1 cut(s) 370
BtsCI GGATG 1 cut(s) 427
BveI ACCTGC 1 cut(s) 171
Cac8I GCNNGC 2 cut(s) 345, 441
CfoI GCGC 1 cut(s) 36
Csp6I GTAC 1 cut(s) 160
CviAII CATG 4 cut(s) 100, 124, 172, 376
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 2 cut(s) 53, 213
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 222, 375
Eco24I GRGCYC 1 cut(s) 92
Eco32I GATATC 1 cut(s) 433
Eco53kI GAGCTC 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 73
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 2 cut(s) 222, 375
EcoT38I GRGCYC 1 cut(s) 92
ErhI CCWWGG 2 cut(s) 222, 375
FaeI CATG 4 cut(s) 103, 127, 175, 379
FaiI YATR 4 cut(s) 101, 125, 173, 377
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FatI CATG 4 cut(s) 99, 123, 171, 375
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 1 cut(s) 434
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 2 cut(s) 348, 450
GlaI GCGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 98
HaeIII GGCC 1 cut(s) 383
HapII CCGG 1 cut(s) 9
HhaI GCGC 1 cut(s) 36
Hin1II CATG 4 cut(s) 103, 127, 175, 379
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HindIII AAGCTT 3 cut(s) 41, 137, 312
HpaII CCGG 1 cut(s) 9
Hpy188I TCNGA 2 cut(s) 18, 216
Hpy188III TCNNGA 2 cut(s) 82, 115
HpyAV CCTTC 2 cut(s) 226, 245
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4V TGCA 3 cut(s) 166, 284, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 2 cut(s) 53, 213
Hsp92II CATG 4 cut(s) 103, 127, 175, 379
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 3 cut(s) 87, 95, 117
LpnPI CCDG 7 cut(s) 22, 128, 176, 270, 281, 404, 428
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 1 cut(s) 175
MaeI CTAG 2 cut(s) 348, 450
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 3 cut(s) 31, 253, 332
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 4 cut(s) 73, 351, 364, 444
MnlI CCTC 4 cut(s) 78, 97, 241, 373
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 3 cut(s) 180, 194, 465
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 418
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 286
MwoI GCNNNNNNNGC 1 cut(s) 40
NciI CCSGG 1 cut(s) 10
NcoI CCATGG 1 cut(s) 375
NdeII GATC 1 cut(s) 216
NlaIII CATG 4 cut(s) 103, 127, 175, 379
NspI RCATGY 1 cut(s) 127
PciI ACATGT 1 cut(s) 123
PctI GAATGC 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 255
PkrI GCNGC 1 cut(s) 59
PscI ACATGT 1 cut(s) 123
PshBI ATTAAT 1 cut(s) 465
Psp124BI GAGCTC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 216
PvuII CAGCTG 1 cut(s) 418
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 98
SacI GAGCTC 1 cut(s) 92
SaqAI TTAA 3 cut(s) 180, 194, 465
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 10
SduI GDGCHC 1 cut(s) 92
SfaNI GCATC 1 cut(s) 175
SfcI CTRYAG 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 4 cut(s) 73, 351, 364, 444
SspMI CTAG 2 cut(s) 348, 450
SstI GAGCTC 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 8
StyI CCWWGG 2 cut(s) 222, 375
TaaI ACNGT 1 cut(s) 337
TasI AATT 4 cut(s) 73, 351, 364, 444
Tru1I TTAA 3 cut(s) 180, 194, 465
Tru9I TTAA 3 cut(s) 180, 194, 465
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 2 cut(s) 86, 88
VspI ATTAAT 1 cut(s) 465
XapI RAATTY 2 cut(s) 73, 351
XceI RCATGY 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 2 cut(s) 348, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.