Rroxscaffold_1G00064920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012913
Physical Location & Seq
Reverse (-)
86729788 .. 86730643
856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00064920.1

Sequence Viewer

Length: 513 bp
ATGGGATCTTGGGTGAGGAAGAGACTGCCATTGCGCCGAAAGCTTCAAACTCAAAGGAGCCTTACCAGGAGGAAATCCATCAAGAAGAGTTCAATTGTCATGGATGCTATGCTCCACATTTACCTACTGAAACTCAAGCTTGAAGCAGCCCACAAAGAGTGCTTAGATCTCATGGCCATCAAAACAAAGTACTTAGATCTAATCAAACATCTTCATGTGCCCGAGGAAGTGAAGGTGGAGAAGATTGAGGAAGGGTTTCATGTAAGAGTGACATGTGACAAAGCAGAAGACACTTTGGTTTCAATCTTAGAAGCGTTTGATGAAATGGGTCTTAATATTGTGCAAGCTAAAGTTTCCTGCAATAGTTACTTTTCCATGGAAGCCATTGCAGCTCATGTAGCTCAAAATCAAGAATACAAGCTGGATGTGACAGATGTGACCCGAGCAATTATTAAGGCCACCAGAAGCGAGATTAATGCCGCAACTGACGAAGTTGATTTAATAACTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.42

Weight (kDa)

8.71

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-TF_ACT-like_plant PF22754 76 - 154 3.9e-21 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29270 AT1G29270
fragaria_vesca FvH4_3g07370 FvH4_3g07370
malus_domestica MD05G1295800.v1.1 MD10G1275900.v1.1
prunus_persica Prupe.4G066300_v2.0.a1
pyrus_communis pycom10g23060
rosa_chinensis RchiOBHm_Chr5g0011571
rosa_laevigata RLG00000031843
rosa_multiflora Rmu_sc0009001.1_g000010
rosa_roxburghii Rroxscaffold_1G00064920
rosa_rugosa Rorug04G0457600 Rorug04G0457700
rosa_samantha Rh5AG089400 Rh5CG098700 Rh5DG084700
rosa_wichuraiana Rw5G007770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 480
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 174
AfaI GTAC 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 272
AgsI TTSAA 4 cut(s) 47, 93, 143, 303
AhlI ACTAGT 1 cut(s) 506
AjnI CCWGG 1 cut(s) 65
AluBI AGCT 6 cut(s) 43, 139, 347, 392, 401, 421
AluI AGCT 6 cut(s) 43, 139, 347, 392, 401, 421
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 1 cut(s) 13
Ama87I CYCGRG 2 cut(s) 221, 441
AoxI GGCC 2 cut(s) 174, 456
ApeKI GCWGC 2 cut(s) 146, 389
AseI ATTAAT 1 cut(s) 474
Asp700I GAANNNNTTC 1 cut(s) 255
AspLEI GCGC 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 25
AvaI CYCGRG 2 cut(s) 221, 441
BaeGI GKGCMC 1 cut(s) 222
BalI TGGCCA 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 294
BbvI GCAGC 2 cut(s) 158, 401
BccI CCATC 2 cut(s) 86, 185
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 16
BcuI ACTAGT 1 cut(s) 506
BfaI CTAG 1 cut(s) 507
BglII AGATCT 2 cut(s) 166, 196
BisI GCNGC 3 cut(s) 147, 390, 480
BlsI GCNGC 3 cut(s) 148, 391, 481
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 1 cut(s) 67
BmeT110I CYCGRG 2 cut(s) 221, 441
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 222, 375
Bse3DI GCAATG 2 cut(s) 29, 384
BseBI CCWGG 1 cut(s) 67
BseDI CCNNGG 2 cut(s) 222, 375
BseGI GGATG 2 cut(s) 109, 430
BseMI GCAATG 2 cut(s) 29, 384
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 2 cut(s) 158, 401
BshFI GGCC 2 cut(s) 176, 458
BsiHKCI CYCGRG 2 cut(s) 221, 441
BsmAI GTCTC 1 cut(s) 16
BsnI GGCC 2 cut(s) 176, 458
BsoBI CYCGRG 2 cut(s) 221, 441
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 3 cut(s) 5, 166, 196
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 1 cut(s) 480
BspANI GGCC 2 cut(s) 176, 458
BspLI GGNNCC 1 cut(s) 59
BspPI GGATC 1 cut(s) 13
BsrDI GCAATG 2 cut(s) 29, 384
BssECI CCNNGG 2 cut(s) 222, 375
BssMI GATC 3 cut(s) 5, 166, 196
BssT1I CCWWGG 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 67
Bst6I CTCTTC 2 cut(s) 14, 80
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 3 cut(s) 163, 193, 307
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 2 cut(s) 109, 430
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 3 cut(s) 8, 169, 199
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 3 cut(s) 5, 166, 196
BstMWI GCNNNNNNNGC 3 cut(s) 40, 389, 398
BstNI CCWGG 1 cut(s) 67
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 65
BstSLI GKGCMC 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 158, 401
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 3 cut(s) 5, 166, 196
BstYI RGATCY 3 cut(s) 5, 166, 196
BsuRI GGCC 2 cut(s) 176, 458
BtgI CCRYGG 1 cut(s) 375
BtsCI GGATG 2 cut(s) 109, 430
Cac8I GCNNGC 1 cut(s) 345
CfoI GCGC 1 cut(s) 36
Csp6I GTAC 1 cut(s) 190
CviAII CATG 7 cut(s) 100, 172, 215, 260, 273, 376, 395
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 3 cut(s) 163, 193, 307
DpnI GATC 3 cut(s) 7, 168, 198
DpnII GATC 3 cut(s) 5, 166, 196
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 2 cut(s) 14, 80
EarI CTCTTC 2 cut(s) 14, 80
Eco130I CCWWGG 1 cut(s) 375
Eco88I CYCGRG 2 cut(s) 221, 441
EcoRII CCWGG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 7 cut(s) 103, 175, 218, 263, 276, 379, 398
FaiI YATR 8 cut(s) 101, 110, 173, 216, 261, 274, 377, 396
FatI CATG 7 cut(s) 99, 171, 214, 259, 272, 375, 394
Fnu4HI GCNGC 3 cut(s) 147, 390, 480
FokI GGATG 2 cut(s) 116, 437
Fsp4HI GCNGC 3 cut(s) 147, 390, 480
FspBI CTAG 1 cut(s) 507
GlaI GCGC 1 cut(s) 35
GluI GCNGC 3 cut(s) 147, 390, 480
HaeIII GGCC 2 cut(s) 176, 458
HhaI GCGC 1 cut(s) 36
Hin1II CATG 7 cut(s) 103, 175, 218, 263, 276, 379, 398
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HindIII AAGCTT 2 cut(s) 41, 137
HphI GGTGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 82, 410
HpyAV CCTTC 2 cut(s) 226, 245
HpyCH4V TGCA 3 cut(s) 343, 360, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 389, 398
HpyF3I CTNAG 3 cut(s) 163, 193, 307
Hsp92II CATG 7 cut(s) 103, 175, 218, 263, 276, 379, 398
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 3 cut(s) 5, 166, 196
LmnI GCTCC 2 cut(s) 57, 117
LpnPI CCDG 5 cut(s) 52, 79, 370, 407, 475
Lsp1109I GCAGC 2 cut(s) 158, 401
LweI GCATC 1 cut(s) 94
MaeI CTAG 1 cut(s) 507
MaeIII GTNAC 5 cut(s) 268, 275, 365, 427, 436
MalI GATC 3 cut(s) 7, 168, 198
MboI GATC 3 cut(s) 5, 166, 196
MboII GAAGA 5 cut(s) 31, 97, 203, 253, 299
MfeI CAATTG 1 cut(s) 93
MflI RGATCY 3 cut(s) 5, 166, 196
MhlI GDGCHC 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 2 cut(s) 93, 447
MluNI TGGCCA 1 cut(s) 176
MnlI CCTC 4 cut(s) 9, 63, 217, 241
Mox20I TGGCCA 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 255
MscI TGGCCA 1 cut(s) 176
MseI TTAA 4 cut(s) 333, 453, 474, 500
MslI CAYNNNNRTG 1 cut(s) 213
Msp20I TGGCCA 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 67
MunI CAATTG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 67
MwoI GCNNNNNNNGC 3 cut(s) 40, 389, 398
NcoI CCATGG 1 cut(s) 375
NdeII GATC 3 cut(s) 5, 166, 196
NlaIII CATG 7 cut(s) 103, 175, 218, 263, 276, 379, 398
NlaIV GGNNCC 1 cut(s) 59
NmuCI GTSAC 4 cut(s) 268, 275, 427, 436
NspI RCATGY 1 cut(s) 276
PciI ACATGT 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 255
PkrI GCNGC 3 cut(s) 148, 391, 481
PscI ACATGT 1 cut(s) 272
PshBI ATTAAT 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 65
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 59
PsuI RGATCY 3 cut(s) 5, 166, 196
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 4 cut(s) 333, 453, 474, 500
SatI GCNGC 3 cut(s) 147, 390, 480
Sau3AI GATC 3 cut(s) 5, 166, 196
ScaI AGTACT 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 67
SduI GDGCHC 1 cut(s) 222
SetI ASST 8 cut(s) 45, 126, 141, 237, 349, 394, 403, 423
SfaNI GCATC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SpeI ACTAGT 1 cut(s) 506
Sse9I AATT 2 cut(s) 93, 447
SsiI CCGC 1 cut(s) 480
SspI AATATT 1 cut(s) 337
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 1 cut(s) 65
StyI CCWWGG 1 cut(s) 375
TasI AATT 2 cut(s) 93, 447
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 482
Tru1I TTAA 4 cut(s) 333, 453, 474, 500
Tru9I TTAA 4 cut(s) 333, 453, 474, 500
TseFI GTSAC 4 cut(s) 268, 275, 427, 436
TseI GCWGC 2 cut(s) 146, 389
Tsp45I GTSAC 4 cut(s) 268, 275, 427, 436
TspDTI ATGAA 3 cut(s) 203, 248, 336
VspI ATTAAT 1 cut(s) 474
XceI RCATGY 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 1 cut(s) 507
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.