FvH4_3g07370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012913
Physical Location & Seq
Reverse (-)
4367131 .. 4368229
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07370.t2

Sequence Viewer

Length: 507 bp
ATGGGATCTTGGGTGAGGAAGAGACTGCCATTGCGCCGAAAGCTTCAAACTCAAAGGAGCTTCACAAGGAGGAAATCCTTACGTACTGCAAAAGTCAGGAAGAGTTCCACTGTCATCGATGCTATGCTCCACATTTACCTACTGAAACGCAAGCTTGAAGCACTCCATAAAGAGTGCTTAGATCTCATGGCCATCAAAACAAAGTACTTAGACCTAATCAAACATATTCATATGCCCAAGGATGATGTTGGACAGGAAGTGAAGGTGGAGAAGATTGAGGAAGGATTTCGTGTAAGAGTGACATGCGAGAAAGCAGATGACACTTTGGTTTCCATCTTAGAAGCGTTTGATGAAATGGGTCTCAATATTCTGCAAGCTAAAGTTTCCTGCAATAGCTACTTTGCCATGGAAGCCATTGCAGCTCATGAAGCTCAAAATCAAGAATACAAGCTGGATGTGACAGGTGTGACACAGGCAATTATTAAGGCCATCAAGAAGCGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.43

Weight (kDa)

9.66

Isoelectric Point (pI)

50.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-TF_ACT-like_plant PF22754 81 - 160 6.8e-22 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29270 AT1G29270
fragaria_vesca FvH4_3g07370 FvH4_3g07370
malus_domestica MD05G1295800.v1.1 MD10G1275900.v1.1
prunus_persica Prupe.4G066300_v2.0.a1
pyrus_communis pycom10g23060
rosa_chinensis RchiOBHm_Chr5g0011571
rosa_laevigata RLG00000031843
rosa_multiflora Rmu_sc0009001.1_g000010
rosa_roxburghii Rroxscaffold_1G00064920
rosa_rugosa Rorug04G0457600 Rorug04G0457700
rosa_samantha Rh5AG089400 Rh5CG098700 Rh5DG084700
rosa_wichuraiana Rw5G007770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 189
AfaI GTAC 2 cut(s) 85, 206
AgsI TTSAA 2 cut(s) 47, 158
AluBI AGCT 8 cut(s) 43, 60, 154, 377, 396, 422, 431, 451
AluI AGCT 8 cut(s) 43, 60, 154, 377, 396, 422, 431, 451
Alw26I GTCTC 2 cut(s) 16, 365
AlwI GGATC 1 cut(s) 13
AoxI GGCC 2 cut(s) 189, 486
ApeKI GCWGC 1 cut(s) 419
Asp700I GAANNNNTTC 1 cut(s) 285
AspLEI GCGC 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 25
BalI TGGCCA 1 cut(s) 191
BbvI GCAGC 1 cut(s) 431
BccI CCATC 3 cut(s) 200, 341, 497
BcoDI GTCTC 2 cut(s) 16, 365
BglII AGATCT 1 cut(s) 181
BisI GCNGC 1 cut(s) 420
BlsI GCNGC 1 cut(s) 421
BmcAI AGTACT 1 cut(s) 206
BmsI GCATC 1 cut(s) 109
Bsa29I ATCGAT 1 cut(s) 117
BsaAI YACGTR 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 237, 405
Bse3DI GCAATG 2 cut(s) 29, 414
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 237, 405
BseGI GGATG 2 cut(s) 247, 460
BseMI GCAATG 2 cut(s) 29, 414
BseXI GCAGC 1 cut(s) 431
BshFI GGCC 2 cut(s) 191, 488
BshVI ATCGAT 1 cut(s) 117
BsmAI GTCTC 2 cut(s) 16, 365
BsnI GGCC 2 cut(s) 191, 488
Bso31I GGTCTC 1 cut(s) 365
Bsp143I GATC 2 cut(s) 5, 181
Bsp19I CCATGG 1 cut(s) 405
BspANI GGCC 2 cut(s) 191, 488
BspDI ATCGAT 1 cut(s) 117
BspHI TCATGA 1 cut(s) 424
BspPI GGATC 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 365
BsrDI GCAATG 2 cut(s) 29, 414
BssECI CCNNGG 2 cut(s) 237, 405
BssMI GATC 2 cut(s) 5, 181
BssT1I CCWWGG 2 cut(s) 237, 405
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 2 cut(s) 14, 95
BstBAI YACGTR 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 152, 375
BstDEI CTNAG 3 cut(s) 178, 208, 337
BstDSI CCRYGG 1 cut(s) 405
BstF5I GGATG 2 cut(s) 247, 460
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 2 cut(s) 8, 184
BstMAI GTCTC 2 cut(s) 16, 365
BstMBI GATC 2 cut(s) 5, 181
BstMWI GCNNNNNNNGC 4 cut(s) 40, 410, 419, 428
BstNSI RCATGY 1 cut(s) 306
BstSNI TACGTA 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 431
BstX2I RGATCY 2 cut(s) 5, 181
BstYI RGATCY 2 cut(s) 5, 181
Bsu15I ATCGAT 1 cut(s) 117
BsuRI GGCC 2 cut(s) 191, 488
BsuTUI ATCGAT 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 405
BtsCI GGATG 2 cut(s) 247, 460
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 2 cut(s) 152, 375
CciI TCATGA 1 cut(s) 424
CfoI GCGC 1 cut(s) 36
ClaI ATCGAT 1 cut(s) 117
Csp6I GTAC 2 cut(s) 84, 205
CviAII CATG 4 cut(s) 187, 303, 406, 425
CviQI GTAC 2 cut(s) 84, 205
DdeI CTNAG 3 cut(s) 178, 208, 337
DpnI GATC 2 cut(s) 7, 183
DpnII GATC 2 cut(s) 5, 181
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 2 cut(s) 14, 95
EarI CTCTTC 2 cut(s) 14, 95
Eco105I TACGTA 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 237, 405
Eco31I GGTCTC 1 cut(s) 365
EcoT14I CCWWGG 2 cut(s) 237, 405
ErhI CCWWGG 2 cut(s) 237, 405
FaeI CATG 4 cut(s) 190, 306, 409, 428
FaiI YATR 9 cut(s) 125, 168, 188, 225, 231, 233, 304, 407, 426
FatI CATG 4 cut(s) 186, 302, 405, 424
FauNDI CATATG 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 420
FokI GGATG 2 cut(s) 254, 467
Fsp4HI GCNGC 1 cut(s) 420
GlaI GCGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 420
HaeIII GGCC 2 cut(s) 191, 488
HhaI GCGC 1 cut(s) 36
Hin1II CATG 4 cut(s) 190, 306, 409, 428
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HindIII AAGCTT 2 cut(s) 41, 152
HphI GGTGA 1 cut(s) 25
Hpy188III TCNNGA 4 cut(s) 97, 425, 440, 493
HpyAV CCTTC 2 cut(s) 256, 275
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 4 cut(s) 89, 373, 390, 419
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 410, 419, 428
HpyF3I CTNAG 3 cut(s) 178, 208, 337
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 4 cut(s) 190, 306, 409, 428
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 2 cut(s) 5, 181
LmnI GCTCC 2 cut(s) 57, 132
LpnPI CCDG 6 cut(s) 82, 239, 400, 437, 447, 458
Lsp1109I GCAGC 1 cut(s) 431
LweI GCATC 1 cut(s) 109
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 3 cut(s) 298, 457, 466
MalI GATC 2 cut(s) 7, 183
MboI GATC 2 cut(s) 5, 181
MboII GAAGA 3 cut(s) 31, 112, 283
MflI RGATCY 2 cut(s) 5, 181
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 1 cut(s) 477
MluNI TGGCCA 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 3 cut(s) 9, 63, 271
Mox20I TGGCCA 1 cut(s) 191
MroXI GAANNNNTTC 1 cut(s) 285
MscI TGGCCA 1 cut(s) 191
MseI TTAA 2 cut(s) 483, 505
Msp20I TGGCCA 1 cut(s) 191
MwoI GCNNNNNNNGC 4 cut(s) 40, 410, 419, 428
NcoI CCATGG 1 cut(s) 405
NdeI CATATG 1 cut(s) 231
NdeII GATC 2 cut(s) 5, 181
NlaIII CATG 4 cut(s) 190, 306, 409, 428
NmuCI GTSAC 3 cut(s) 298, 457, 466
NspI RCATGY 1 cut(s) 306
PagI TCATGA 1 cut(s) 424
PdmI GAANNNNTTC 1 cut(s) 285
PkrI GCNGC 1 cut(s) 421
Ppu21I YACGTR 1 cut(s) 83
PsuI RGATCY 2 cut(s) 5, 181
RsaI GTAC 2 cut(s) 85, 206
RsaNI GTAC 2 cut(s) 84, 205
SaqAI TTAA 2 cut(s) 483, 505
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 2 cut(s) 5, 181
ScaI AGTACT 1 cut(s) 206
SfaNI GCATC 1 cut(s) 109
SnaBI TACGTA 1 cut(s) 83
Sse9I AATT 1 cut(s) 477
SspI AATATT 1 cut(s) 367
StyI CCWWGG 2 cut(s) 237, 405
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 117
TasI AATT 1 cut(s) 477
TatI WGTACW 1 cut(s) 204
Tru1I TTAA 2 cut(s) 483, 505
Tru9I TTAA 2 cut(s) 483, 505
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 3 cut(s) 298, 457, 466
TseI GCWGC 1 cut(s) 419
Tsp45I GTSAC 3 cut(s) 298, 457, 466
TspDTI ATGAA 3 cut(s) 218, 366, 441
TspRI CASTG 1 cut(s) 115
XceI RCATGY 1 cut(s) 306
XmnI GAANNNNTTC 1 cut(s) 285
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.