Rh5DG084700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0012913
Physical Location & Seq
Forward (+)
7429953 .. 7430976
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG084700.1

Sequence Viewer

Length: 498 bp
ATGCTTCTTTTCTTCTCTGCTGCTAACCTTTTAAATACACTGTTACGTGTTTTATATATGAAGATCAAGAAGAGTTCAATTGTCATGGATGCTATGCTCCACATTTACCTACTGAAACTCAAGCTTGAAGCAGCCCACAAAGAGTGCTTAGATCTCATGGCCATCAAAACAAAGTACTTAGATCTAATCAAACATCTTCATGTGCCCGAGGAAGTGAAGGTGGAGAAGATTGAGGAAGGGTTTCATGTAAGAGTGACATGCGAGAAAGCAGAAGACACTTTGGTTTCAATCTTAGAAGCGTTTGATGAAATGGGTCTTAATATTCTGCAAGCTAAAGTTTCCTGCAATAGTTACTTTTCCATGGAAGCCATTGCAGCTCATGTAGCTCAAAATCAAGAATACAAGCTGGATGTGACAGATGTGACCCAAGCAATTATTAAGGCCACCAGAAACGAGATTAATGCCGCAACTGACGAAGTTGATTTAAAAACTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.7

Weight (kDa)

5.68

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-TF_ACT-like_plant PF22754 71 - 149 9.2e-22 Plant bHLH transcription factor, ACT-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29270 AT1G29270
fragaria_vesca FvH4_3g07370 FvH4_3g07370
malus_domestica MD05G1295800.v1.1 MD10G1275900.v1.1
prunus_persica Prupe.4G066300_v2.0.a1
pyrus_communis pycom10g23060
rosa_chinensis RchiOBHm_Chr5g0011571
rosa_laevigata RLG00000031843
rosa_multiflora Rmu_sc0009001.1_g000010
rosa_roxburghii Rroxscaffold_1G00064920
rosa_rugosa Rorug04G0457600 Rorug04G0457700
rosa_samantha Rh5AG089400 Rh5CG098700 Rh5DG084700
rosa_wichuraiana Rw5G007770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 465
AcoI YGGCCR 1 cut(s) 159
AfaI GTAC 1 cut(s) 176
AflIII ACRYGT 1 cut(s) 46
AgsI TTSAA 3 cut(s) 78, 128, 288
AhlI ACTAGT 1 cut(s) 491
AluBI AGCT 5 cut(s) 124, 332, 377, 386, 406
AluI AGCT 5 cut(s) 124, 332, 377, 386, 406
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 2 cut(s) 159, 441
ApeKI GCWGC 3 cut(s) 20, 131, 374
AseI ATTAAT 1 cut(s) 459
Asp700I GAANNNNTTC 1 cut(s) 240
AvaI CYCGRG 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 207
BalI TGGCCA 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 279
BbvI GCAGC 3 cut(s) 7, 143, 386
BccI CCATC 1 cut(s) 170
BcgI CGANNNNNNTGC 2 cut(s) 443, 477
BcuI ACTAGT 1 cut(s) 491
BfaI CTAG 1 cut(s) 492
BglII AGATCT 2 cut(s) 151, 181
BisI GCNGC 4 cut(s) 21, 132, 375, 465
BlsI GCNGC 4 cut(s) 22, 133, 376, 466
BmcAI AGTACT 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 206
BmsI GCATC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 207, 360
Bse3DI GCAATG 1 cut(s) 369
BseDI CCNNGG 2 cut(s) 207, 360
BseGI GGATG 2 cut(s) 94, 415
BseMI GCAATG 1 cut(s) 369
BseSI GKGCMC 1 cut(s) 207
BseXI GCAGC 3 cut(s) 7, 143, 386
BshFI GGCC 2 cut(s) 161, 443
BsiHKCI CYCGRG 1 cut(s) 206
BsnI GGCC 2 cut(s) 161, 443
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 3 cut(s) 63, 151, 181
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 1 cut(s) 465
BspANI GGCC 2 cut(s) 161, 443
BsrDI GCAATG 1 cut(s) 369
BssECI CCNNGG 2 cut(s) 207, 360
BssMI GATC 3 cut(s) 63, 151, 181
BssT1I CCWWGG 1 cut(s) 360
Bst4CI ACNGT 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 330
BstDEI CTNAG 3 cut(s) 148, 178, 292
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 2 cut(s) 94, 415
BstKTI GATC 3 cut(s) 66, 154, 184
BstMBI GATC 3 cut(s) 63, 151, 181
BstMWI GCNNNNNNNGC 2 cut(s) 374, 383
BstNSI RCATGY 1 cut(s) 261
BstSLI GKGCMC 1 cut(s) 207
BstV1I GCAGC 3 cut(s) 7, 143, 386
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 2 cut(s) 151, 181
BstYI RGATCY 2 cut(s) 151, 181
BsuRI GGCC 2 cut(s) 161, 443
BtgI CCRYGG 1 cut(s) 360
BtsCI GGATG 2 cut(s) 94, 415
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 330
Csp6I GTAC 1 cut(s) 175
CviAII CATG 7 cut(s) 85, 157, 200, 245, 258, 361, 380
CviJI RGCY 9 cut(s) 124, 134, 161, 332, 368, 377, 386, 406, 443
CviKI_1 RGCY 9 cut(s) 124, 134, 161, 332, 368, 377, 386, 406, 443
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 3 cut(s) 148, 178, 292
DpnI GATC 3 cut(s) 65, 153, 183
DpnII GATC 3 cut(s) 63, 151, 181
DraI TTTAAA 2 cut(s) 33, 486
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 360
Eco88I CYCGRG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 7 cut(s) 88, 160, 203, 248, 261, 364, 383
FatI CATG 7 cut(s) 84, 156, 199, 244, 257, 360, 379
Fnu4HI GCNGC 4 cut(s) 21, 132, 375, 465
FokI GGATG 2 cut(s) 101, 422
Fsp4HI GCNGC 4 cut(s) 21, 132, 375, 465
FspBI CTAG 1 cut(s) 492
GluI GCNGC 4 cut(s) 21, 132, 375, 465
HaeIII GGCC 2 cut(s) 161, 443
Hin1II CATG 7 cut(s) 88, 160, 203, 248, 261, 364, 383
HindIII AAGCTT 1 cut(s) 122
Hpy188III TCNNGA 2 cut(s) 67, 395
HpyAV CCTTC 2 cut(s) 211, 230
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 3 cut(s) 328, 345, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 383
HpyF3I CTNAG 3 cut(s) 148, 178, 292
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 7 cut(s) 88, 160, 203, 248, 261, 364, 383
Kzo9I GATC 3 cut(s) 63, 151, 181
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 3 cut(s) 355, 392, 460
Lsp1109I GCAGC 3 cut(s) 7, 143, 386
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 5 cut(s) 42, 253, 350, 412, 421
MalI GATC 3 cut(s) 65, 153, 183
MboI GATC 3 cut(s) 63, 151, 181
MboII GAAGA 6 cut(s) 4, 73, 82, 188, 238, 284
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 2 cut(s) 151, 181
MhlI GDGCHC 1 cut(s) 207
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 2 cut(s) 78, 432
MluNI TGGCCA 1 cut(s) 161
MnlI CCTC 2 cut(s) 202, 226
Mox20I TGGCCA 1 cut(s) 161
MroXI GAANNNNTTC 1 cut(s) 240
MscI TGGCCA 1 cut(s) 161
MseI TTAA 5 cut(s) 32, 318, 438, 459, 485
MslI CAYNNNNRTG 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 161
MunI CAATTG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 374, 383
NcoI CCATGG 1 cut(s) 360
NdeII GATC 3 cut(s) 63, 151, 181
NlaIII CATG 7 cut(s) 88, 160, 203, 248, 261, 364, 383
NmuCI GTSAC 3 cut(s) 253, 412, 421
NspI RCATGY 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 240
PkrI GCNGC 4 cut(s) 22, 133, 376, 466
Ppu21I YACGTR 1 cut(s) 47
PshBI ATTAAT 1 cut(s) 459
PsuI RGATCY 2 cut(s) 151, 181
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 198
SaqAI TTAA 5 cut(s) 32, 318, 438, 459, 485
SatI GCNGC 4 cut(s) 21, 132, 375, 465
Sau3AI GATC 3 cut(s) 63, 151, 181
ScaI AGTACT 1 cut(s) 176
SduI GDGCHC 1 cut(s) 207
SetI ASST 9 cut(s) 30, 49, 111, 126, 222, 334, 379, 388, 408
SfaNI GCATC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SpeI ACTAGT 1 cut(s) 491
Sse9I AATT 2 cut(s) 78, 432
SsiI CCGC 1 cut(s) 465
SspI AATATT 1 cut(s) 322
SspMI CTAG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 1 cut(s) 49
TasI AATT 2 cut(s) 78, 432
TatI WGTACW 1 cut(s) 174
TauI GCSGC 1 cut(s) 467
Tru1I TTAA 5 cut(s) 32, 318, 438, 459, 485
Tru9I TTAA 5 cut(s) 32, 318, 438, 459, 485
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 3 cut(s) 253, 412, 421
TseI GCWGC 3 cut(s) 20, 131, 374
Tsp45I GTSAC 3 cut(s) 253, 412, 421
TspDTI ATGAA 4 cut(s) 74, 188, 233, 321
TspRI CASTG 1 cut(s) 45
VspI ATTAAT 1 cut(s) 459
XceI RCATGY 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 492
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.