Rorug04G0457600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012913
Physical Location & Seq
Forward (+)
61062156 .. 61074177
12022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0457600.1

Sequence Viewer

Length: 1629 bp
ATGCTAGTTAGGAAAGTGGTTAGGCTTGATGAGATAAAGAGGAGCAGCCCGGCCCCGACACCATTGGCGGTGGTCGGCGGCGGCTCTGCCACTAACTCCGGCGGCCCTTTCCGGCCACCTCCGGGGATCAAAAATATGGTTTCTATCCGACCGTTGGATATTCGTGATGATTTTTGGAGGGTGATCCTAAGGGCGATCCGTGAGGATCCGACCGTTGGATCATCATTTAATTTCGATCCGACCGTTGAATTGTCGTTTGAGTATGTTTTTGAGCTATTGGCTAAGATAAGACGCAGCGGGAATATTGAGACGACTCTAACCCCGAAGAGACTTCTATGGACCAAGGTCCACCTGCACCAAGCCGTTAGGGGGCGCGTGACCGACACGCGCGGTTATGTAACCGCATGGTCCGCATCTGGGCATCCGAGTCTTCGGGCTATCTCAGATCCAGATCGAGCGTTCTCCTTGGAATCGTCCCCGAATTTTGTATCCTTCTCAGTTCTCTCATCGTCATCTCGGTCATCGTTATCCTTCTCCCCCAATTTGACTCAGCTCCTCGAATTGGATTCACCTCCCCGATTCGTGAATGAGAAGGCAGAGATTGAATCTCATGTGCAACCTGGATCTGTATCAGTATATGTTCGTTATGGACAAAGTAGACCAAAGGATGCAAATCTTTTAGCTCAAGCCCATGAATTGGTGACTGAAGATAATCGTGCTAAACCAACCAGAGTTGCAGTTGATAATGCCTCGGGCAGGAAAGCCAGTTTGATTAAGGGGAATAGGCTCTTTGATGATGGAATGGCTGAAGGCATTCAACAGGTTATGTGGTTGGACTGCTATAAGAAGATTATATGGTTCGCGTGGAATAAAGTGTTTTCAGTTCCAATTGGTGTAATTGAGGTCAGTTTGGCTTCTTTGTGGCTGATTTCCTTGGCTTGGATGGGGAATAAGGTCCGTGATGATGGAATAGCTGAATGCATTCAAAAGTTGTTAGGTCTTGCTTTTGCAGATTTTATGCAAAAAAGTATTGGTACCGTCTTTCTGCTGCTGTTCCATTGTCTGTTACTCAGTATTATCTTGCTTTCCCATTTTGATTCAGATTTTGGGAACAGTTTGCAGTCAGATTCCTTGAATCTTTTGGATCCAGAGTGTGTAATGCCAAGAGCTGACTTCGATAAGATTGGACAAGGTGGTTTTGGGGCTGTTTATTATGCCGAGCTGACAAGCAAGAGAAAGGGACGAGACGAAACAAAAAGAGAGAGAGAGAGAGACAAGAGAACAGGCAAGAACGAAAAGAAGGAGAAGAGAGAGACGGGAAGCTCTTGCTTAGATTGCTACTTTGTCTATGTAATTTTGCTGATGGAGATCTTCAACATCAGTGGCTCTTTTTTGCCCCCTTCAAATTTTGAATTTCAGCTTCCAAACAGTGTTCATCAAGTTTCTGAAGATTACATTTGGGAAAACTCTAATACTTTACAGGCCAGTGTTTACATCAGAGGAAGTCAAGCACCATCGAGGTGGAAGCAGCTTCTCAGGATTATGCTCATGTCAAAGCGTCCTAAAATCCCCCTTTCTGGCCCAAGCCACAGGACCAACAAGACACCTAATCCCTCAAGAGATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

542

Amino Acids

60.88

Weight (kDa)

9.3

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012913)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29270 AT1G29270
fragaria_vesca FvH4_3g07370 FvH4_3g07370
malus_domestica MD05G1295800.v1.1 MD10G1275900.v1.1
prunus_persica Prupe.4G066300_v2.0.a1
pyrus_communis pycom10g23060
rosa_chinensis RchiOBHm_Chr5g0011571
rosa_laevigata RLG00000031843
rosa_multiflora Rmu_sc0009001.1_g000010
rosa_roxburghii Rroxscaffold_1G00064920
rosa_rugosa Rorug04G0457600 Rorug04G0457700
rosa_samantha Rh5AG089400 Rh5CG098700 Rh5DG084700
rosa_wichuraiana Rw5G007770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 360
Acc36I ACCTGC 1 cut(s) 360
Acc65I GGTACC 1 cut(s) 1034
AccB1I GGYRCC 1 cut(s) 1034
AccB7I CCANNNNNTGG 1 cut(s) 697
AccI GTMKAC 1 cut(s) 658
AccII CGCG 4 cut(s) 375, 388, 390, 863
AciI CCGC 8 cut(s) 68, 78, 81, 102, 297, 390, 402, 411
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 3 cut(s) 481, 1405, 1412
AcuI CTGAAG 3 cut(s) 726, 828, 1467
AfaI GTAC 1 cut(s) 1036
AgsI TTSAA 8 cut(s) 248, 605, 818, 986, 1135, 1375, 1404, 1412
AjnI CCWGG 1 cut(s) 619
AluBI AGCT 9 cut(s) 274, 553, 683, 974, 1169, 1222, 1323, 1420, 1531
AluI AGCT 9 cut(s) 274, 553, 683, 974, 1169, 1222, 1323, 1420, 1531
Alw26I GTCTC 5 cut(s) 302, 322, 1239, 1266, 1307
Ama87I CYCGRG 1 cut(s) 751
AoxI GGCC 5 cut(s) 51, 103, 113, 1482, 1579
ApeKI GCWGC 4 cut(s) 45, 294, 1048, 1528
ApoI RAATTY 3 cut(s) 481, 1405, 1412
Asp700I GAANNNNTTC 2 cut(s) 813, 981
Asp718I GGTACC 1 cut(s) 1034
AspLEI GCGC 2 cut(s) 375, 390
AspS9I GGNCC 8 cut(s) 52, 104, 339, 346, 408, 955, 1580, 1593
AsuC2I CCSGG 2 cut(s) 50, 123
AsuHPI GGTGA 3 cut(s) 193, 561, 712
AvaI CYCGRG 1 cut(s) 751
AvaII GGWCC 5 cut(s) 339, 346, 408, 955, 1593
AxyI CCTNAGG 1 cut(s) 188
BamHI GGATCC 2 cut(s) 205, 1144
BanI GGYRCC 1 cut(s) 1034
BbsI GAAGAC 1 cut(s) 422
BbvI GCAGC 4 cut(s) 57, 306, 1035, 1540
BccI CCATC 5 cut(s) 791, 937, 959, 1357, 1522
BceAI ACGGC 1 cut(s) 347
BciT130I CCWGG 1 cut(s) 621
BciVI GTATCC 1 cut(s) 499
BcnI CCSGG 2 cut(s) 50, 123
BcoDI GTCTC 5 cut(s) 302, 322, 1239, 1266, 1307
BfaI CTAG 1 cut(s) 5
BfuAI ACCTGC 1 cut(s) 360
BfuI GTATCC 1 cut(s) 499
BglII AGATCT 1 cut(s) 1368
BisI GCNGC 7 cut(s) 46, 79, 82, 103, 295, 1049, 1529
BlsI GCNGC 7 cut(s) 47, 80, 83, 104, 296, 1050, 1530
Bme1390I CCNGG 3 cut(s) 50, 123, 621
Bme18I GGWCC 5 cut(s) 339, 346, 408, 955, 1593
BmeT110I CYCGRG 1 cut(s) 751
BmgT120I GGNCC 8 cut(s) 52, 104, 339, 346, 408, 955, 1580, 1593
BmiI GGNNCC 4 cut(s) 54, 207, 1036, 1146
BmrFI CCNGG 3 cut(s) 50, 123, 621
BmsI GCATC 3 cut(s) 422, 430, 658
BoxI GACNNNNGTC 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 422
BpuEI CTTGAG 2 cut(s) 669, 1600
BpuMI CCSGG 2 cut(s) 50, 123
BsaBI GATNNNNATC 4 cut(s) 450, 628, 672, 1367
BsaJI CCNNGG 5 cut(s) 122, 342, 465, 750, 933
Bse1I ACTGG 2 cut(s) 765, 1485
Bse21I CCTNAGG 1 cut(s) 188
Bse8I GATNNNNATC 4 cut(s) 450, 628, 672, 1367
BseBI CCWGG 1 cut(s) 621
BseDI CCNNGG 5 cut(s) 122, 342, 465, 750, 933
BseGI GGATG 3 cut(s) 421, 673, 948
BseJI GATNNNNATC 4 cut(s) 450, 628, 672, 1367
BseMII CTCAG 5 cut(s) 456, 510, 563, 1084, 1549
BseNI ACTGG 2 cut(s) 765, 1485
BseRI GAGGAG 2 cut(s) 55, 545
BseXI GCAGC 4 cut(s) 57, 306, 1035, 1540
BsgI GTGCAG 1 cut(s) 338
Bsh1236I CGCG 4 cut(s) 375, 388, 390, 863
Bsh1285I CGRYCG 3 cut(s) 152, 213, 243
BshFI GGCC 5 cut(s) 53, 105, 115, 1484, 1581
BshNI GGYRCC 1 cut(s) 1034
BsiEI CGRYCG 3 cut(s) 152, 213, 243
BsiHKCI CYCGRG 1 cut(s) 751
BsiSI CCGG 4 cut(s) 50, 99, 112, 122
BslFI GGGAC 2 cut(s) 460, 1254
BsmAI GTCTC 5 cut(s) 302, 322, 1239, 1266, 1307
BsmBI CGTCTC 3 cut(s) 302, 1239, 1307
BsmFI GGGAC 2 cut(s) 460, 1254
BsmI GAATGC 3 cut(s) 813, 981, 983
BsnI GGCC 5 cut(s) 53, 105, 115, 1484, 1581
BsoBI CYCGRG 1 cut(s) 751
BspACI CCGC 8 cut(s) 68, 78, 81, 102, 297, 390, 402, 411
BspANI GGCC 5 cut(s) 53, 105, 115, 1484, 1581
BspCNI CTCAG 5 cut(s) 455, 509, 562, 1083, 1548
BspFNI CGCG 4 cut(s) 375, 388, 390, 863
BspLI GGNNCC 4 cut(s) 54, 207, 1036, 1146
BspMI ACCTGC 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 1034
BsrI ACTGG 2 cut(s) 765, 1485
BssECI CCNNGG 5 cut(s) 122, 342, 465, 750, 933
BssT1I CCWWGG 3 cut(s) 342, 465, 933
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 6 cut(s) 153, 214, 244, 1039, 1115, 1430
Bst6I CTCTTC 2 cut(s) 320, 1301
BstDEI CTNAG 8 cut(s) 188, 282, 442, 496, 549, 1070, 1330, 1535
BstENI CCTNNNNNAGG 1 cut(s) 754
BstF5I GGATG 3 cut(s) 421, 673, 948
BstFNI CGCG 4 cut(s) 375, 388, 390, 863
BstHHI GCGC 2 cut(s) 375, 390
BstMAI GTCTC 5 cut(s) 302, 322, 1239, 1266, 1307
BstMCI CGRYCG 3 cut(s) 152, 213, 243
BstMWI GCNNNNNNNGC 2 cut(s) 410, 1335
BstNI CCWGG 1 cut(s) 621
BstPAI GACNNNNGTC 1 cut(s) 344
BstSCI CCNGG 3 cut(s) 48, 121, 619
BstUI CGCG 4 cut(s) 375, 388, 390, 863
BstV1I GCAGC 4 cut(s) 57, 306, 1035, 1540
BstV2I GAAGAC 1 cut(s) 422
BstX2I RGATCY 5 cut(s) 205, 445, 623, 1144, 1368
BstXI CCANNNNNNTGG 1 cut(s) 1521
BstYI RGATCY 5 cut(s) 205, 445, 623, 1144, 1368
Bsu36I CCTNAGG 1 cut(s) 188
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 5 cut(s) 53, 105, 115, 1484, 1581
BtsCI GGATG 3 cut(s) 421, 673, 948
BtsIMutI CAGTG 3 cut(s) 1387, 1435, 1492
BveI ACCTGC 1 cut(s) 360
CfoI GCGC 2 cut(s) 375, 390
Cfr13I GGNCC 8 cut(s) 52, 104, 339, 346, 408, 955, 1580, 1593
CseI GACGC 2 cut(s) 300, 1547
Csp6I GTAC 1 cut(s) 1035
CspCI CAANNNNNGTGG 2 cut(s) 1363, 1398
CviAII CATG 4 cut(s) 405, 611, 692, 1549
CviQI GTAC 1 cut(s) 1035
DdeI CTNAG 8 cut(s) 188, 282, 442, 496, 549, 1070, 1330, 1535
EaeI YGGCCR 1 cut(s) 113
Eam1104I CTCTTC 2 cut(s) 320, 1301
EarI CTCTTC 2 cut(s) 320, 1301
Eco130I CCWWGG 3 cut(s) 342, 465, 933
Eco47I GGWCC 5 cut(s) 339, 346, 408, 955, 1593
Eco57I CTGAAG 3 cut(s) 726, 828, 1467
Eco81I CCTNAGG 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 751
EcoNI CCTNNNNNAGG 1 cut(s) 754
EcoRII CCWGG 1 cut(s) 619
EcoT14I CCWWGG 3 cut(s) 342, 465, 933
EcoT22I ATGCAT 1 cut(s) 983
ErhI CCWWGG 3 cut(s) 342, 465, 933
Esp3I CGTCTC 3 cut(s) 302, 1239, 1307
FaeI CATG 4 cut(s) 408, 614, 695, 1552
FaqI GGGAC 2 cut(s) 460, 1254
FatI CATG 4 cut(s) 404, 610, 691, 1548
FauI CCCGC 1 cut(s) 290
FblI GTMKAC 1 cut(s) 658
Fnu4HI GCNGC 7 cut(s) 46, 79, 82, 103, 295, 1049, 1529
FokI GGATG 3 cut(s) 408, 680, 955
Fsp4HI GCNGC 7 cut(s) 46, 79, 82, 103, 295, 1049, 1529
FspBI CTAG 1 cut(s) 5
GlaI GCGC 2 cut(s) 374, 389
GluI GCNGC 7 cut(s) 46, 79, 82, 103, 295, 1049, 1529
HaeIII GGCC 5 cut(s) 53, 105, 115, 1484, 1581
HapII CCGG 4 cut(s) 50, 99, 112, 122
HgaI GACGC 2 cut(s) 300, 1547
HhaI GCGC 2 cut(s) 375, 390
Hin1II CATG 4 cut(s) 408, 614, 695, 1552
Hin6I GCGC 2 cut(s) 373, 388
HinP1I GCGC 2 cut(s) 373, 388
HpaII CCGG 4 cut(s) 50, 99, 112, 122
HphI GGTGA 3 cut(s) 193, 561, 712
Hpy166II GTNNAC 3 cut(s) 349, 659, 1492
Hpy188I TCNGA 9 cut(s) 149, 210, 240, 426, 445, 1102, 1126, 1447, 1499
Hpy188III TCNNGA 6 cut(s) 164, 449, 583, 1148, 1537, 1617
Hpy8I GTNNAC 3 cut(s) 349, 659, 1492
HpyAV CCTTC 6 cut(s) 502, 541, 586, 803, 1294, 1410
HpyCH4III ACNGT 6 cut(s) 153, 214, 244, 1039, 1115, 1430
HpyCH4V TGCA 8 cut(s) 355, 616, 671, 737, 981, 1010, 1021, 1120
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 1335
HpyF3I CTNAG 8 cut(s) 188, 282, 442, 496, 549, 1070, 1330, 1535
Hsp92II CATG 4 cut(s) 408, 614, 695, 1552
HspAI GCGC 2 cut(s) 373, 388
KpnI GGTACC 1 cut(s) 1038
LmnI GCTCC 2 cut(s) 42, 558
Lsp1109I GCAGC 4 cut(s) 57, 306, 1035, 1540
LweI GCATC 3 cut(s) 422, 430, 658
MaeI CTAG 1 cut(s) 5
MaeIII GTNAC 4 cut(s) 376, 397, 700, 1065
MboII GAAGA 7 cut(s) 337, 422, 719, 859, 1318, 1363, 1460
MfeI CAATTG 1 cut(s) 888
MflI RGATCY 5 cut(s) 205, 445, 623, 1144, 1368
MlyI GAGTC 3 cut(s) 307, 436, 541
MmeI TCCRAC 6 cut(s) 135, 172, 196, 233, 263, 813
Mph1103I ATGCAT 1 cut(s) 983
MroXI GAANNNNTTC 2 cut(s) 813, 981
MseI TTAA 2 cut(s) 228, 774
MslI CAYNNNNRTG 1 cut(s) 1519
MspA1I CMGCKG 1 cut(s) 297
MspI CCGG 4 cut(s) 50, 99, 112, 122
MspR9I CCNGG 3 cut(s) 50, 123, 621
MunI CAATTG 1 cut(s) 888
Mva1269I GAATGC 3 cut(s) 813, 981, 983
MvaI CCWGG 1 cut(s) 621
MvnI CGCG 4 cut(s) 375, 388, 390, 863
MwoI GCNNNNNNNGC 2 cut(s) 410, 1335
NciI CCSGG 2 cut(s) 50, 123
NlaIII CATG 4 cut(s) 408, 614, 695, 1552
NlaIV GGNNCC 4 cut(s) 54, 207, 1036, 1146
NmeAIII GCCGAG 1 cut(s) 1243
NmuCI GTSAC 2 cut(s) 376, 700
NsiI ATGCAT 1 cut(s) 983
PaqCI CACCTGC 1 cut(s) 360
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 3 cut(s) 813, 981, 983
PdmI GAANNNNTTC 2 cut(s) 813, 981
PfeI GAWTC 7 cut(s) 470, 566, 579, 605, 1097, 1127, 1135
PflMI CCANNNNNTGG 1 cut(s) 697
PkrI GCNGC 7 cut(s) 47, 80, 83, 104, 296, 1050, 1530
PleI GAGTC 3 cut(s) 307, 435, 541
PpsI GAGTC 3 cut(s) 307, 435, 541
PshAI GACNNNNGTC 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 619
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 4 cut(s) 54, 207, 1036, 1146
PspPI GGNCC 8 cut(s) 52, 104, 339, 346, 408, 955, 1580, 1593
PsuI RGATCY 5 cut(s) 205, 445, 623, 1144, 1368
RsaI GTAC 1 cut(s) 1036
RsaNI GTAC 1 cut(s) 1035
RseI CAYNNNNRTG 1 cut(s) 1519
SaqAI TTAA 2 cut(s) 228, 774
SatI GCNGC 7 cut(s) 46, 79, 82, 103, 295, 1049, 1529
Sau96I GGNCC 8 cut(s) 52, 104, 339, 346, 408, 955, 1580, 1593
SchI GAGTC 3 cut(s) 307, 436, 541
ScrFI CCNGG 3 cut(s) 50, 123, 621
SfaNI GCATC 3 cut(s) 422, 430, 658
SinI GGWCC 5 cut(s) 339, 346, 408, 955, 1593
SmiMI CAYNNNNRTG 1 cut(s) 1519
SmlI CTYRAG 2 cut(s) 684, 1615
SmoI CTYRAG 2 cut(s) 684, 1615
SsiI CCGC 8 cut(s) 68, 78, 81, 102, 297, 390, 402, 411
SspI AATATT 1 cut(s) 304
SspMI CTAG 1 cut(s) 5
StyD4I CCNGG 3 cut(s) 48, 121, 619
StyI CCWWGG 3 cut(s) 342, 465, 933
TaaI ACNGT 6 cut(s) 153, 214, 244, 1039, 1115, 1430
TaqI TCGA 5 cut(s) 234, 454, 558, 1176, 1517
TaqII GACCGA 2 cut(s) 395, 507
TauI GCSGC 3 cut(s) 81, 84, 105
TfiI GAWTC 7 cut(s) 470, 566, 579, 605, 1097, 1127, 1135
Tru1I TTAA 2 cut(s) 228, 774
Tru9I TTAA 2 cut(s) 228, 774
TscAI CASTG 3 cut(s) 1387, 1435, 1492
TseFI GTSAC 2 cut(s) 376, 700
TseI GCWGC 4 cut(s) 45, 294, 1048, 1528
Tsp45I GTSAC 2 cut(s) 376, 700
TspDTI ATGAA 2 cut(s) 708, 1424
TspGWI ACGGA 2 cut(s) 188, 947
TspRI CASTG 3 cut(s) 1387, 1435, 1492
Van91I CCANNNNNTGG 1 cut(s) 697
VpaK11BI GGWCC 5 cut(s) 339, 346, 408, 955, 1593
XagI CCTNNNNNAGG 1 cut(s) 754
XapI RAATTY 3 cut(s) 481, 1405, 1412
XmiI GTMKAC 1 cut(s) 658
XmnI GAANNNNTTC 2 cut(s) 813, 981
XspI CTAG 1 cut(s) 5
Zsp2I ATGCAT 1 cut(s) 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.