AT1G29330

ER lumen protein-retaining receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015807
Physical Location & Seq
Reverse (-)
10258248 .. 10261232
2985 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29330.1

Sequence Viewer

Length: 648 bp
ATGAATATCTTTAGATTTGCTGGCGATATGAGTCACTTGATCAGTGTCTTAATCCTTCTTCTCAAAATCTACGCGACGAAATCTTGCGCTGGAATCTCTCTCAAGACTCAAGAGCTCTATGCGCTTGTGTTCTTGACTCGGTACTTGGATCTGTTTACGGATTATGTATCTCTGTACAACAGCATCATGAAGATTGTCTTCATTGCCAGCTCTTTGGCTATCGTTTGGTGTATGCGTAGGCATCCACTTGTGAGGAGGTCATACGATAAGGACCTGGACACATTTCGTCATCAGTATGTTGTGTTAGCGTGTTTTGTACTGGGACTTATCCTGAATGAAAAATTCACAGTTCAAGAGGTGTTCTGGGCGTTTTCTATCTACTTAGAGGCAGTTGCTATCCTTCCCCAGTTGGTTCTGCTACAAAGAAGTGGGAATGTCGACAATTTGACTGGGCAATATGTTGTCTTTCTCGGGGCGTATCGGGGACTCTATATTATCAACTGGATCTATCGCTATTTCACAGAAGATCATTTCACTAGATGGATTGCTTGTGTGTCTGGTCTTGTCCAAACAGCTCTCTATGCGGATTTCTTCTACTACTACTACATAAGCTGGAAAACCAACACCAAACTTAAGCTTCCGGCTTGA

Protein Analysis

215

Amino Acids

25.2

Weight (kDa)

9.07

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ER_lumen_recept PF00810 28 - 171 5.8e-60 ER lumen protein retaining receptor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29330 AT1G29330
fragaria_vesca FvH4_3g07240 FvH4_3g07240
malus_domestica MD00G1008400.v1.1
prunus_persica Prupe.4G067600_v2.0.a1
pyrus_communis pycom05g27360 pycom10g22930
rosa_chinensis RchiOBHm_Chr5g0011901
rosa_laevigata RLG00000031866
rosa_multiflora Rmu_sc0001475.1_g000009
rosa_roxburghii Rroxscaffold_1G00064730
rosa_rugosa Rorug04G0459600
rosa_samantha Rh5CG100900
rosa_wichuraiana Rw5G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 438
AccII CGCG 1 cut(s) 74
AciI CCGC 1 cut(s) 584
AclWI GGATC 2 cut(s) 156, 512
AcsI RAATTY 1 cut(s) 341
AfaI GTAC 3 cut(s) 143, 176, 318
AflII CTTAAG 1 cut(s) 632
AgsI TTSAA 1 cut(s) 353
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 5 cut(s) 115, 210, 575, 612, 637
AluI AGCT 5 cut(s) 115, 210, 575, 612, 637
Alw21I GWGCWC 1 cut(s) 117
AlwI GGATC 2 cut(s) 156, 512
Ama87I CYCGRG 1 cut(s) 470
ApoI RAATTY 1 cut(s) 341
AspLEI GCGC 2 cut(s) 89, 124
AspS9I GGNCC 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 470
AvaII GGWCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 117
BccI CCATC 1 cut(s) 534
BciT130I CCWGG 1 cut(s) 275
BclI TGATCA 1 cut(s) 39
BfaI CTAG 1 cut(s) 537
BfrI CTTAAG 1 cut(s) 632
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 271
BmrFI CCNGG 1 cut(s) 275
BmrI ACTGGG 3 cut(s) 329, 400, 459
BmsI GCATC 2 cut(s) 192, 250
BmuI ACTGGG 3 cut(s) 329, 400, 459
BpiI GAAGAC 1 cut(s) 190
BpuEI CTTGAG 2 cut(s) 86, 93
Bse1I ACTGG 4 cut(s) 324, 406, 454, 506
Bse3DI GCAATG 1 cut(s) 201
BseBI CCWGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 201
BseNI ACTGG 4 cut(s) 324, 406, 454, 506
BseRI GAGGAG 1 cut(s) 268
Bsh1236I CGCG 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 470
BsiSI CCGG 1 cut(s) 641
BslFI GGGAC 2 cut(s) 336, 498
BsmFI GGGAC 2 cut(s) 336, 498
BsoBI CYCGRG 1 cut(s) 470
Bsp1286I GDGCHC 1 cut(s) 117
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 4 cut(s) 39, 148, 504, 526
BspACI CCGC 1 cut(s) 584
BspFNI CGCG 1 cut(s) 74
BspHI TCATGA 1 cut(s) 186
BspPI GGATC 2 cut(s) 156, 512
BspTI CTTAAG 1 cut(s) 632
BsrDI GCAATG 1 cut(s) 201
BsrGI TGTACA 1 cut(s) 174
BsrI ACTGG 4 cut(s) 324, 406, 454, 506
BssMI GATC 4 cut(s) 39, 148, 504, 526
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 349
BstAFI CTTAAG 1 cut(s) 632
BstAUI TGTACA 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 22, 208
BstDEI CTNAG 1 cut(s) 382
BstF5I GGATG 1 cut(s) 241
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 2 cut(s) 89, 124
BstKTI GATC 4 cut(s) 42, 151, 507, 529
BstMBI GATC 4 cut(s) 39, 148, 504, 526
BstMWI GCNNNNNNNGC 2 cut(s) 121, 581
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 273
BstUI CGCG 1 cut(s) 74
BstV2I GAAGAC 1 cut(s) 190
BstX2I RGATCY 2 cut(s) 148, 504
BstXI CCANNNNNNTGG 1 cut(s) 214
BstYI RGATCY 2 cut(s) 148, 504
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 2 cut(s) 22, 208
CciI TCATGA 1 cut(s) 186
CfoI GCGC 2 cut(s) 89, 124
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 3 cut(s) 142, 175, 317
CviAII CATG 1 cut(s) 187
CviJI RGCY 7 cut(s) 115, 210, 218, 575, 612, 637, 644
CviKI_1 RGCY 7 cut(s) 115, 210, 218, 575, 612, 637, 644
CviQI GTAC 3 cut(s) 142, 175, 317
DdeI CTNAG 1 cut(s) 382
DpnI GATC 4 cut(s) 41, 150, 506, 528
DpnII GATC 4 cut(s) 39, 148, 504, 526
Ecl136II GAGCTC 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 470
EcoICRI GAGCTC 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 117
FaeI CATG 1 cut(s) 190
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 2 cut(s) 336, 498
FatI CATG 1 cut(s) 186
FbaI TGATCA 1 cut(s) 39
FblI GTMKAC 1 cut(s) 438
FokI GGATG 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 117
FspBI CTAG 1 cut(s) 537
GlaI GCGC 2 cut(s) 88, 123
HapII CCGG 1 cut(s) 641
HhaI GCGC 2 cut(s) 89, 124
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 2 cut(s) 87, 122
HinP1I GCGC 2 cut(s) 87, 122
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 5 cut(s) 31, 93, 106, 136, 486
HpaII CCGG 1 cut(s) 641
Hpy166II GTNNAC 2 cut(s) 156, 439
Hpy188III TCNNGA 6 cut(s) 103, 110, 133, 187, 331, 353
Hpy8I GTNNAC 2 cut(s) 156, 439
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 2 cut(s) 65, 410
HpyCH4III ACNGT 1 cut(s) 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 581
HpyF3I CTNAG 1 cut(s) 382
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 2 cut(s) 87, 122
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 4 cut(s) 39, 148, 504, 526
LweI GCATC 2 cut(s) 192, 250
MaeI CTAG 1 cut(s) 537
MaeIII GTNAC 1 cut(s) 32
MalI GATC 4 cut(s) 41, 150, 506, 528
MboI GATC 4 cut(s) 39, 148, 504, 526
MboII GAAGA 5 cut(s) 50, 190, 202, 536, 583
MflI RGATCY 2 cut(s) 148, 504
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 2 cut(s) 341, 442
MlyI GAGTC 4 cut(s) 40, 100, 130, 480
MnlI CCTC 4 cut(s) 246, 249, 349, 379
MseI TTAA 2 cut(s) 50, 633
MslI CAYNNNNRTG 1 cut(s) 294
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 1 cut(s) 641
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 121, 581
NdeII GATC 4 cut(s) 39, 148, 504, 526
NlaIII CATG 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 32
PagI TCATGA 1 cut(s) 186
PfeI GAWTC 1 cut(s) 93
PleI GAGTC 4 cut(s) 39, 100, 130, 480
PpsI GAGTC 4 cut(s) 39, 100, 130, 480
PpuMI RGGWCCY 1 cut(s) 271
Psp124BI GAGCTC 1 cut(s) 117
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspPI GGNCC 1 cut(s) 271
PspPPI RGGWCCY 1 cut(s) 271
PsuI RGATCY 2 cut(s) 148, 504
RsaI GTAC 3 cut(s) 143, 176, 318
RsaNI GTAC 3 cut(s) 142, 175, 317
RseI CAYNNNNRTG 1 cut(s) 294
SacI GAGCTC 1 cut(s) 117
SalI GTCGAC 1 cut(s) 437
SaqAI TTAA 2 cut(s) 50, 633
Sau3AI GATC 4 cut(s) 39, 148, 504, 526
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 4 cut(s) 40, 100, 130, 480
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 1 cut(s) 117
SetI ASST 8 cut(s) 117, 212, 260, 276, 360, 577, 614, 639
SfaNI GCATC 2 cut(s) 192, 250
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 3 cut(s) 101, 108, 632
SmoI CTYRAG 3 cut(s) 101, 108, 632
Sse9I AATT 2 cut(s) 341, 442
SsiI CCGC 1 cut(s) 584
SspMI CTAG 1 cut(s) 537
SstI GAGCTC 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 438
TasI AATT 2 cut(s) 341, 442
TatI WGTACW 2 cut(s) 174, 316
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 2 cut(s) 50, 633
Tru9I TTAA 2 cut(s) 50, 633
TscAI CASTG 1 cut(s) 49
TseFI GTSAC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 4 cut(s) 17, 190, 203, 351
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 49
Vha464I CTTAAG 1 cut(s) 632
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.