FvH4_3g07240

ER lumen

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015807
Physical Location & Seq
Forward (+)
4289771 .. 4293800
4030 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07240.t1

Sequence Viewer

Length: 648 bp
ATGAACGCCTTCAGGCTCGCCGGCGATATTACTCACCTCATCAGCATCCTCGTCCTCCTCCTCAAAATCTACGCCACCAGATCCTGCTCAGGGATCTCGCTCAAGACTCAGGAGCTCTACGCGGTGGTGTTCTTGGCGCGGTACTTGGATCTGTTCACGGATTTCATTTCGGTCTACAACTCTGTGATGAAGGTTGTGTTCATTTTGAGCTCGGTGTTGATTGTTGTGATTATGCGGCGGCACAGGACGGTGAGGCGGTCCTACGATAAGGAGCTGGACACTTTCCGTCATCACTATCTCGTCGGAGCTTGCTTTGTGCTTGCTCTGCTTTTTAATGAGAAGCTCACGTTTCAGGAGGTCTTCTGGGCATTTTCAATATACTTGGAGGCAGTCGCGATTATTCCACAATTAGTTTTGCTACAACGAAGTGGAAATGTGGATAATTTGACAGGGCAGTATGTTTTATTTCTGGGGGCCTATCGTGCATTGTACATCCTCAACTGGATCTACCGCTACTTCACAGAAGCAAAATTCAGTCGATGGATAGCTTGCATATCTGGTCTGGTTCAGACAGCTTTATATGCAGATTTTTTCTACTACTACTTTCTCAGTTGGAAAAACAATGCAAAGCTTAATCTGCCAGCTTAA

Protein Analysis

216

Amino Acids

25.09

Weight (kDa)

9.4

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ER_lumen_recept PF00810 28 - 171 5.4e-59 ER lumen protein retaining receptor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29330 AT1G29330
fragaria_vesca FvH4_3g07240 FvH4_3g07240
malus_domestica MD00G1008400.v1.1
prunus_persica Prupe.4G067600_v2.0.a1
pyrus_communis pycom05g27360 pycom10g22930
rosa_chinensis RchiOBHm_Chr5g0011901
rosa_laevigata RLG00000031866
rosa_multiflora Rmu_sc0001475.1_g000009
rosa_roxburghii Rroxscaffold_1G00064730
rosa_rugosa Rorug04G0459600
rosa_samantha Rh5CG100900
rosa_wichuraiana Rw5G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 174
AccII CGCG 3 cut(s) 122, 139, 395
AciI CCGC 6 cut(s) 122, 139, 235, 238, 256, 511
AclWI GGATC 4 cut(s) 75, 101, 156, 512
AcsI RAATTY 1 cut(s) 530
AfaI GTAC 2 cut(s) 143, 491
AfiI CCNNNNNNNGG 1 cut(s) 90
AgsI TTSAA 1 cut(s) 375
AluBI AGCT 9 cut(s) 115, 210, 274, 308, 343, 548, 575, 631, 644
AluI AGCT 9 cut(s) 115, 210, 274, 308, 343, 548, 575, 631, 644
Alw21I GWGCWC 2 cut(s) 117, 212
AlwI GGATC 4 cut(s) 75, 101, 156, 512
AlwNI CAGNNNCTG 1 cut(s) 84
AoxI GGCC 1 cut(s) 474
ApoI RAATTY 1 cut(s) 530
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 2 cut(s) 258, 474
AsuHPI GGTGA 2 cut(s) 26, 262
AvaII GGWCC 1 cut(s) 258
BanII GRGCYC 2 cut(s) 117, 212
BbsI GAAGAC 1 cut(s) 352
Bbv12I GWGCWC 2 cut(s) 117, 212
BccI CCATC 1 cut(s) 534
BisI GCNGC 2 cut(s) 236, 239
BlsI GCNGC 2 cut(s) 237, 240
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 2 cut(s) 258, 474
BmiI GGNNCC 1 cut(s) 475
BmsI GCATC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 352
Bpu10I CCTNAGC 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 506
BseGI GGATG 2 cut(s) 45, 492
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMII CTCAG 3 cut(s) 102, 122, 622
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 2 cut(s) 47, 50
Bsh1236I CGCG 3 cut(s) 122, 139, 395
BshFI GGCC 1 cut(s) 476
BsiHKAI GWGCWC 2 cut(s) 117, 212
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 90
BsnI GGCC 1 cut(s) 476
Bsp1286I GDGCHC 2 cut(s) 117, 212
Bsp1407I TGTACA 1 cut(s) 489
Bsp143I GATC 4 cut(s) 80, 93, 148, 504
Bsp68I TCGCGA 1 cut(s) 395
BspACI CCGC 6 cut(s) 122, 139, 235, 238, 256, 511
BspANI GGCC 1 cut(s) 476
BspCNI CTCAG 3 cut(s) 101, 121, 621
BspFNI CGCG 3 cut(s) 122, 139, 395
BspLI GGNNCC 1 cut(s) 475
BspPI GGATC 4 cut(s) 75, 101, 156, 512
BsrFI RCCGGY 1 cut(s) 20
BsrGI TGTACA 1 cut(s) 489
BsrI ACTGG 1 cut(s) 506
BssAI RCCGGY 1 cut(s) 20
BssMI GATC 4 cut(s) 80, 93, 148, 504
Bst4CI ACNGT 1 cut(s) 250
BstAUI TGTACA 1 cut(s) 489
BstC8I GCNNGC 6 cut(s) 18, 22, 310, 321, 550, 642
BstDEI CTNAG 3 cut(s) 88, 108, 608
BstF5I GGATG 2 cut(s) 45, 492
BstFNI CGCG 3 cut(s) 122, 139, 395
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 4 cut(s) 83, 96, 151, 507
BstMBI GATC 4 cut(s) 80, 93, 148, 504
BstMWI GCNNNNNNNGC 4 cut(s) 325, 482, 581, 637
BstUI CGCG 3 cut(s) 122, 139, 395
BstV2I GAAGAC 1 cut(s) 352
BstX2I RGATCY 4 cut(s) 80, 93, 148, 504
BstYI RGATCY 4 cut(s) 80, 93, 148, 504
BsuRI GGCC 1 cut(s) 476
BtsCI GGATG 2 cut(s) 45, 492
BtuMI TCGCGA 1 cut(s) 395
Cac8I GCNNGC 6 cut(s) 18, 22, 310, 321, 550, 642
CaiI CAGNNNCTG 1 cut(s) 84
CfoI GCGC 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 258, 474
Csp6I GTAC 2 cut(s) 142, 490
CviQI GTAC 2 cut(s) 142, 490
DdeI CTNAG 3 cut(s) 88, 108, 608
DpnI GATC 4 cut(s) 82, 95, 150, 506
DpnII GATC 4 cut(s) 80, 93, 148, 504
Ecl136II GAGCTC 2 cut(s) 115, 210
Eco24I GRGCYC 2 cut(s) 117, 212
Eco47I GGWCC 1 cut(s) 258
Eco53kI GAGCTC 2 cut(s) 115, 210
EcoICRI GAGCTC 2 cut(s) 115, 210
EcoO109I RGGNCCY 1 cut(s) 474
EcoT38I GRGCYC 2 cut(s) 117, 212
FaiI YATR 6 cut(s) 233, 379, 459, 554, 580, 582
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 236, 239
FokI GGATG 2 cut(s) 32, 479
FriOI GRGCYC 2 cut(s) 117, 212
Fsp4HI GCNGC 2 cut(s) 236, 239
GlaI GCGC 1 cut(s) 138
GluI GCNGC 2 cut(s) 236, 239
HaeIII GGCC 1 cut(s) 476
HapII CCGG 1 cut(s) 21
HhaI GCGC 1 cut(s) 139
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 1 cut(s) 106
HpaII CCGG 1 cut(s) 21
HphI GGTGA 2 cut(s) 26, 262
Hpy166II GTNNAC 2 cut(s) 156, 175
Hpy188I TCNGA 2 cut(s) 305, 570
Hpy188III TCNNGA 4 cut(s) 103, 110, 353, 394
Hpy8I GTNNAC 2 cut(s) 156, 175
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 19, 184
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 4 cut(s) 485, 552, 584, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 325, 482, 581, 637
HpyF3I CTNAG 3 cut(s) 88, 108, 608
HpySE526I ACGT 1 cut(s) 347
HspAI GCGC 1 cut(s) 137
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 4 cut(s) 80, 93, 148, 504
LmnI GCTCC 3 cut(s) 112, 271, 305
LweI GCATC 1 cut(s) 54
MaeII ACGT 1 cut(s) 347
MalI GATC 4 cut(s) 82, 95, 150, 506
MboI GATC 4 cut(s) 80, 93, 148, 504
MboII GAAGA 1 cut(s) 352
MflI RGATCY 4 cut(s) 80, 93, 148, 504
MhlI GDGCHC 2 cut(s) 117, 212
MluCI AATT 3 cut(s) 407, 442, 530
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 2 cut(s) 283, 593
MnlI CCTC 9 cut(s) 47, 59, 65, 68, 71, 246, 349, 379, 506
MreI CGCCGGCG 1 cut(s) 20
MroNI GCCGGC 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 333, 633, 646
MspI CCGG 1 cut(s) 21
MvnI CGCG 3 cut(s) 122, 139, 395
MwoI GCNNNNNNNGC 4 cut(s) 325, 482, 581, 637
NaeI GCCGGC 1 cut(s) 22
NdeII GATC 4 cut(s) 80, 93, 148, 504
NgoMIV GCCGGC 1 cut(s) 20
NlaIV GGNNCC 1 cut(s) 475
NruI TCGCGA 1 cut(s) 395
PdiI GCCGGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 237, 240
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Psp124BI GAGCTC 2 cut(s) 117, 212
PspN4I GGNNCC 1 cut(s) 475
PspPI GGNCC 2 cut(s) 258, 474
PstNI CAGNNNCTG 1 cut(s) 84
PsuI RGATCY 4 cut(s) 80, 93, 148, 504
RruI TCGCGA 1 cut(s) 395
RsaI GTAC 2 cut(s) 143, 491
RsaNI GTAC 2 cut(s) 142, 490
SacI GAGCTC 2 cut(s) 117, 212
SaqAI TTAA 3 cut(s) 333, 633, 646
SatI GCNGC 2 cut(s) 236, 239
Sau3AI GATC 4 cut(s) 80, 93, 148, 504
Sau96I GGNCC 2 cut(s) 258, 474
SchI GAGTC 1 cut(s) 100
SduI GDGCHC 2 cut(s) 117, 212
SfaNI GCATC 1 cut(s) 54
SgrAI CRCCGGYG 1 cut(s) 20
SinI GGWCC 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 3 cut(s) 407, 442, 530
SsiI CCGC 6 cut(s) 122, 139, 235, 238, 256, 511
SstI GAGCTC 2 cut(s) 117, 212
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 1 cut(s) 350
TaqI TCGA 1 cut(s) 538
TaqII GACCGA 1 cut(s) 160
TasI AATT 3 cut(s) 407, 442, 530
TatI WGTACW 1 cut(s) 489
TauI GCSGC 2 cut(s) 238, 241
Tru1I TTAA 3 cut(s) 333, 633, 646
Tru9I TTAA 3 cut(s) 333, 633, 646
TspDTI ATGAA 4 cut(s) 17, 154, 190, 203
TspGWI ACGGA 2 cut(s) 173, 275
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 1 cut(s) 530
XmiI GTMKAC 1 cut(s) 174
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.