Prupe.4G067600_v2.0.a1

ER lumen

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015807
Physical Location & Seq
Reverse (-)
3275558 .. 3278231
2674 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G067600.1

Sequence Viewer

Length: 648 bp
ATGAATGCGTTCAGGTTGGCTGGGGATATGACCCACCTGGCCAGTATTTTGGTCCTCCTTCTCAAAATCTACGCCACCAAATCATGCTCAGGGGTTTCGCTTAAGACTCAGGAGCTCTATGTGCTAGTGTTTCTGAGTCGGTACTTGGACCTGTTCACGAACTTCGTCTCAGTATACAACACTGTGATGAAGCTGGTGTTCATTGGAAGCTCGCTGGCCATTGTTTGGTGTATGCGGATGCACAAAGTGGTGAAGCGTTCTTACAATAAAGAGCTTGACACTTTCCGCCATGATTTTCTTCTTGGGGGATGCTTTGTGTTGGCCCTCCTTATCCACGAGGAATTCACATTTCAAGAGGTTTTGTGGGCATTTTCCATATACTTGGAGGCAGTTTCAATTCTTCCACAGTTAGTTTTGTTACAGCGAAGTGGAAATGTAGACAATTTGACAGGACAATATGTTTTCTTACTTGGGGCCTATCGTGCATTGTACATACTCAACTGGATCTACCGCTACTTCACAGAACCTAAATTTGGTAGATGGATAGCTTGCATTGCTGGTCTGGTCCAGACAGCTTTATATGGAGATTTTTTCTACTACTACTTTCGCAGCTGGAAGAACAATGCAAAGCTTCAGCTGCCAGCTTAA

Protein Analysis

216

Amino Acids

25.0

Weight (kDa)

9.21

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29330 AT1G29330
fragaria_vesca FvH4_3g07240 FvH4_3g07240
malus_domestica MD00G1008400.v1.1
prunus_persica Prupe.4G067600_v2.0.a1
pyrus_communis pycom05g27360 pycom10g22930
rosa_chinensis RchiOBHm_Chr5g0011901
rosa_laevigata RLG00000031866
rosa_multiflora Rmu_sc0001475.1_g000009
rosa_roxburghii Rroxscaffold_1G00064730
rosa_rugosa Rorug04G0459600
rosa_samantha Rh5CG100900
rosa_wichuraiana Rw5G007960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 225
AccI GTMKAC 2 cut(s) 174, 438
AciI CCGC 3 cut(s) 235, 286, 511
AclWI GGATC 1 cut(s) 512
AcoI YGGCCR 2 cut(s) 39, 216
AcsI RAATTY 2 cut(s) 341, 530
AcuI CTGAAG 1 cut(s) 617
AdeI CACNNNGTG 1 cut(s) 247
AfaI GTAC 2 cut(s) 143, 491
AfiI CCNNNNNNNGG 2 cut(s) 225, 533
AflII CTTAAG 1 cut(s) 101
AgsI TTSAA 2 cut(s) 353, 396
AjnI CCWGG 1 cut(s) 36
AjuI GAANNNNNNNTTGG 2 cut(s) 516, 548
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 512
AoxI GGCC 4 cut(s) 39, 216, 321, 474
ApeKI GCWGC 2 cut(s) 609, 637
ApoI RAATTY 2 cut(s) 341, 530
Asp700I GAANNNNTTC 1 cut(s) 8
AspS9I GGNCC 5 cut(s) 52, 148, 322, 474, 565
AsuHPI GGTGA 1 cut(s) 262
AvaII GGWCC 3 cut(s) 52, 148, 565
BalI TGGCCA 2 cut(s) 41, 218
BanII GRGCYC 1 cut(s) 117
BarI GAAGNNNNNNTAC 2 cut(s) 245, 277
BauI CACGAG 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 621, 624
BccI CCATC 1 cut(s) 534
BciT130I CCWGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 1 cut(s) 125
BfrI CTTAAG 1 cut(s) 101
BisI GCNGC 2 cut(s) 610, 638
BlsI GCNGC 2 cut(s) 611, 639
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 3 cut(s) 52, 148, 565
BmgT120I GGNCC 5 cut(s) 52, 148, 322, 474, 565
BmiI GGNNCC 1 cut(s) 475
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 2 cut(s) 228, 299
Bpu10I CCTNAGC 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 533
Bse1I ACTGG 2 cut(s) 42, 506
Bse3DI GCAATG 1 cut(s) 552
BseBI CCWGG 1 cut(s) 38
BseGI GGATG 2 cut(s) 243, 314
BseLI CCNNNNNNNGG 2 cut(s) 225, 533
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 4 cut(s) 102, 122, 125, 183
BseNI ACTGG 2 cut(s) 42, 506
BseXI GCAGC 2 cut(s) 621, 624
BseYI CCCAGC 1 cut(s) 20
BshFI GGCC 4 cut(s) 41, 218, 323, 476
BsiHKAI GWGCWC 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 225, 533
BsmAI GTCTC 1 cut(s) 172
BsmBI CGTCTC 1 cut(s) 172
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 4 cut(s) 41, 218, 323, 476
Bsp1286I GDGCHC 1 cut(s) 117
Bsp1407I TGTACA 1 cut(s) 489
Bsp143I GATC 1 cut(s) 504
BspACI CCGC 3 cut(s) 235, 286, 511
BspANI GGCC 4 cut(s) 41, 218, 323, 476
BspCNI CTCAG 4 cut(s) 101, 121, 126, 182
BspLI GGNNCC 1 cut(s) 475
BspPI GGATC 1 cut(s) 512
BspTI CTTAAG 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 552
BsrGI TGTACA 1 cut(s) 489
BsrI ACTGG 2 cut(s) 42, 506
BssMI GATC 1 cut(s) 504
BssNAI GTATAC 1 cut(s) 175
BssSI CACGAG 1 cut(s) 335
Bst1107I GTATAC 1 cut(s) 175
Bst2BI CACGAG 1 cut(s) 335
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 2 cut(s) 184, 408
BstAFI CTTAAG 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 489
BstC8I GCNNGC 4 cut(s) 212, 216, 550, 642
BstDEI CTNAG 4 cut(s) 88, 108, 134, 169
BstF5I GGATG 2 cut(s) 243, 314
BstKTI GATC 1 cut(s) 507
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 1 cut(s) 504
BstMWI GCNNNNNNNGC 4 cut(s) 121, 482, 554, 637
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstV1I GCAGC 2 cut(s) 621, 624
BstX2I RGATCY 1 cut(s) 504
BstXI CCANNNNNNTGG 2 cut(s) 49, 382
BstYI RGATCY 1 cut(s) 504
BstZ17I GTATAC 1 cut(s) 175
BsuRI GGCC 4 cut(s) 41, 218, 323, 476
BtsCI GGATG 2 cut(s) 243, 314
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 4 cut(s) 212, 216, 550, 642
Cfr13I GGNCC 5 cut(s) 52, 148, 322, 474, 565
Csp6I GTAC 2 cut(s) 142, 490
CviAII CATG 2 cut(s) 84, 290
CviQI GTAC 2 cut(s) 142, 490
DdeI CTNAG 4 cut(s) 88, 108, 134, 169
DpnI GATC 1 cut(s) 506
DpnII GATC 1 cut(s) 504
DraIII CACNNNGTG 1 cut(s) 247
EaeI YGGCCR 2 cut(s) 39, 216
EciI GGCGGA 1 cut(s) 275
Ecl136II GAGCTC 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 117
Eco47I GGWCC 3 cut(s) 52, 148, 565
Eco53kI GAGCTC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 617
EcoICRI GAGCTC 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 474
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 2 cut(s) 87, 293
FatI CATG 2 cut(s) 83, 289
FblI GTMKAC 2 cut(s) 174, 438
Fnu4HI GCNGC 2 cut(s) 610, 638
FokI GGATG 2 cut(s) 250, 321
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 2 cut(s) 610, 638
FspBI CTAG 1 cut(s) 125
GluI GCNGC 2 cut(s) 610, 638
GsaI CCCAGC 1 cut(s) 24
HaeIII GGCC 4 cut(s) 41, 218, 323, 476
Hin1II CATG 2 cut(s) 87, 293
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 2 cut(s) 106, 136
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 3 cut(s) 156, 175, 439
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 4 cut(s) 110, 157, 353, 568
Hpy8I GTNNAC 3 cut(s) 156, 175, 439
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 2 cut(s) 184, 408
HpyCH4V TGCA 4 cut(s) 241, 485, 552, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 121, 482, 554, 637
HpyF3I CTNAG 4 cut(s) 88, 108, 134, 169
Hsp92II CATG 2 cut(s) 87, 293
Kzo9I GATC 1 cut(s) 504
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 2 cut(s) 621, 624
LweI GCATC 2 cut(s) 228, 299
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 417
MalI GATC 1 cut(s) 506
MboI GATC 1 cut(s) 504
MboII GAAGA 3 cut(s) 290, 392, 628
MflI RGATCY 1 cut(s) 504
MhlI GDGCHC 1 cut(s) 117
MlsI TGGCCA 2 cut(s) 41, 218
MluCI AATT 4 cut(s) 341, 396, 442, 530
MluNI TGGCCA 2 cut(s) 41, 218
MlyI GAGTC 2 cut(s) 100, 145
MnlI CCTC 5 cut(s) 65, 331, 335, 349, 379
Mox20I TGGCCA 2 cut(s) 41, 218
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 2 cut(s) 41, 218
MseI TTAA 2 cut(s) 102, 646
MslI CAYNNNNRTG 1 cut(s) 185
Msp20I TGGCCA 2 cut(s) 41, 218
MspA1I CMGCKG 2 cut(s) 612, 637
MspCI CTTAAG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 4 cut(s) 121, 482, 554, 637
NdeII GATC 1 cut(s) 504
NlaIII CATG 2 cut(s) 87, 293
NlaIV GGNNCC 1 cut(s) 475
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 225
PkrI GCNGC 2 cut(s) 611, 639
PleI GAGTC 2 cut(s) 100, 144
PpsI GAGTC 2 cut(s) 100, 144
Psp124BI GAGCTC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 20
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 475
PspPI GGNCC 5 cut(s) 52, 148, 322, 474, 565
PsuI RGATCY 1 cut(s) 504
PvuII CAGCTG 2 cut(s) 612, 637
RsaI GTAC 2 cut(s) 143, 491
RsaNI GTAC 2 cut(s) 142, 490
RseI CAYNNNNRTG 1 cut(s) 185
SacI GAGCTC 1 cut(s) 117
SaqAI TTAA 2 cut(s) 102, 646
SatI GCNGC 2 cut(s) 610, 638
Sau3AI GATC 1 cut(s) 504
Sau96I GGNCC 5 cut(s) 52, 148, 322, 474, 565
SchI GAGTC 2 cut(s) 100, 145
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 1 cut(s) 117
SfaNI GCATC 2 cut(s) 228, 299
SinI GGWCC 3 cut(s) 52, 148, 565
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 4 cut(s) 341, 396, 442, 530
SsiI CCGC 3 cut(s) 235, 286, 511
SspMI CTAG 1 cut(s) 125
SstI GAGCTC 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 184, 408
TasI AATT 4 cut(s) 341, 396, 442, 530
TatI WGTACW 1 cut(s) 489
Tru1I TTAA 2 cut(s) 102, 646
Tru9I TTAA 2 cut(s) 102, 646
TscAI CASTG 1 cut(s) 187
TseI GCWGC 2 cut(s) 609, 637
TspDTI ATGAA 3 cut(s) 17, 190, 203
TspRI CASTG 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 225
Vha464I CTTAAG 1 cut(s) 101
VpaK11BI GGWCC 3 cut(s) 52, 148, 565
XapI RAATTY 2 cut(s) 341, 530
XmiI GTMKAC 2 cut(s) 174, 438
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.