AT1G29790

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014427
Physical Location & Seq
Forward (+)
10429718 .. 10432123
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29790.2

Sequence Viewer

Length: 1137 bp
ATGGCGGGATTCACCATGAGCTTGAACTTGCTTCTACTAGTAGCAATGGTAGCTACAAACATCCTCTCACTCTACCACCTCTCCTCCACCACAAATTTCTTCCAATCCACCGTCAAATCCTCACAATCCTCTGTTCCCACAGTTCCCGATCACCTCCTCCGTCAGCTCCACACTATCCGCGCCGCTATTAACCACCTCACAACTCACCAACCAGACAAATCAACTTCAACCTCGACCTCACGCGCCGCCGTCTCCTCCTCCTCCTCCTCCACCGCGCCTAAAGAGCTTTTAATCTACTCTAAGCTCTCACCTATAGCTTCAGCTTGTCATAACTACCCTGACCTTCTTCATGAGTATATGAACTACACTCCTTTCTCTCTTTGTCCTTCTGACACCGATCTCGTCGAGAAACTCATCCTCCGTGGCTGCCACCCACTTCCTCGCCGTCGTTGCTTCTCACGAACGCCGCGAAATCCTTCAGATTCGAAACCTGAATCTAATGTTCTCTGGTCTTACTACTCTTGCAAGAGCTTTGATTGTTTGATTACTAAGTTCTCTGATCTAGGGTTTGATCTCTCCTTAGAGAAATCCAAATCTCAGTTCTCTGCTTACAAATCCGAGCTTGATCTTCCGATCTCGCAGCTTCTCCAGATCGCTAAATCTGCTAATTCTGTTCTCCGTCTTGGTATCGATGTCGGTGGTGGTACTGGATCTTTCGCTGCTGCGATGAAGGCTCGTAATGTTACGGTTTTGACCACGACGATGAATTTTAATGCGCCGTATAGTGAAGCGGTGGCGATGAGAGGACTTGTGCCGCTTCATGTGCCGTTACAGCAACGGCTTCCGGTGTTTGATGGTGTTGTGGATTTGGTTAGGTGTGGAAGAGCGGTGAATCGGTGGATTCCGGTGACGGTTATGGAATTTTTCTTCTTTGATTTGGATAGGATTCTTCGTGGTGGTGGTTATCTTTGGTTGGATCGGTTCTTTAGTAAAAAAGTTGATCTTGAAAATGTTTATGCACCGATGATCGGGAAATTGGGGTATAAGAAGGTGAAATGGGCGGTGGCTAACAAAGCTGATTCGAAACATGGTGAAGTTTTCTTGACGGCTTTGCTTCAAAAACCTGTTGCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11 Methyltransf_29

Protein Analysis

378

Amino Acids

41.96

Weight (kDa)

9.47

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_29 PF03141 212 - 324 3.6e-07 Putative S-adenosyl-L-methionine-dependent methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014427)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29790 AT1G29790
fragaria_vesca FvH4_3g06240 FvH4_3g06240
malus_domestica MD05G1290600.v1.1 MD16G1203100.v1.1
prunus_persica Prupe.4G075100_v2.0.a1
pyrus_communis pycom10g22250
rosa_chinensis RchiOBHm_Chr5g0013071
rosa_laevigata RLG00000031983
rosa_multiflora Rmu_sc0003892.1_g000015
rosa_rugosa Rorug05G0007000
rosa_samantha Rh5AG101000 Rh5BG097600 Rh5CG109700 Rh5DG096600
rosa_wichuraiana Rw5G008830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 887
AccII CGCG 4 cut(s) 180, 243, 275, 469
AclWI GGATC 2 cut(s) 718, 984
AcsI RAATTY 3 cut(s) 94, 766, 920
AcuI CTGAAG 2 cut(s) 303, 462
AfaI GTAC 1 cut(s) 706
AfiI CCNNNNNNNGG 1 cut(s) 1028
AgsI TTSAA 4 cut(s) 25, 228, 1007, 1118
AhlI ACTAGT 1 cut(s) 37
AjuI GAANNNNNNNTTGG 2 cut(s) 584, 616
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 2 cut(s) 718, 984
ApeKI GCWGC 4 cut(s) 426, 640, 719, 722
ApoI RAATTY 3 cut(s) 94, 766, 920
Asp700I GAANNNNTTC 1 cut(s) 475
AspLEI GCGC 4 cut(s) 182, 245, 277, 778
AsuHPI GGTGA 8 cut(s) 4, 143, 197, 300, 901, 919, 1063, 1103
AsuII TTCGAA 2 cut(s) 485, 1082
BbvI GCAGC 4 cut(s) 413, 652, 706, 709
BccI CCATC 1 cut(s) 848
BceAI ACGGC 6 cut(s) 233, 429, 763, 811, 854, 1122
BcoDI GTCTC 1 cut(s) 256
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 2 cut(s) 38, 563
BfmI CTRYAG 1 cut(s) 312
BisI GCNGC 8 cut(s) 183, 246, 427, 467, 641, 720, 723, 815
BlsI GCNGC 8 cut(s) 184, 247, 428, 468, 642, 721, 724, 816
BpmI CTGGAG 1 cut(s) 632
Bpu14I TTCGAA 2 cut(s) 485, 1082
Bsa29I ATCGAT 1 cut(s) 690
BsaJI CCNNGG 1 cut(s) 421
BsaWI WCCGGW 2 cut(s) 844, 904
BsaXI ACNNNNNCTCC 6 cut(s) 65, 68, 95, 98, 402, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 1028
Bse1I ACTGG 1 cut(s) 712
Bse3DI GCAATG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 690
BseDI CCNNGG 1 cut(s) 421
BseGI GGATG 2 cut(s) 60, 414
BseLI CCNNNNNNNGG 1 cut(s) 1028
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 611
BseNI ACTGG 1 cut(s) 712
BseRI GAGGAG 7 cut(s) 73, 146, 244, 247, 250, 253, 256
BseXI GCAGC 4 cut(s) 413, 652, 706, 709
Bsh1236I CGCG 4 cut(s) 180, 243, 275, 469
BshVI ATCGAT 1 cut(s) 690
BsiSI CCGG 2 cut(s) 845, 905
BslI CCNNNNNNNGG 1 cut(s) 1028
BsmAI GTCTC 1 cut(s) 256
BsmBI CGTCTC 1 cut(s) 256
Bsp119I TTCGAA 2 cut(s) 485, 1082
BspCNI CTCAG 1 cut(s) 610
BspDI ATCGAT 1 cut(s) 690
BspFNI CGCG 4 cut(s) 180, 243, 275, 469
BspHI TCATGA 1 cut(s) 349
BspPI GGATC 2 cut(s) 718, 984
BspQI GCTCTTC 1 cut(s) 877
BspT104I TTCGAA 2 cut(s) 485, 1082
BsrBI CCGCTC 1 cut(s) 887
BsrDI GCAATG 1 cut(s) 51
BsrI ACTGG 1 cut(s) 712
BssECI CCNNGG 1 cut(s) 421
Bst4CI ACNGT 4 cut(s) 112, 142, 748, 913
Bst6I CTCTTC 1 cut(s) 877
BstBI TTCGAA 2 cut(s) 485, 1082
BstDEI CTNAG 4 cut(s) 300, 549, 580, 597
BstDSI CCRYGG 1 cut(s) 421
BstF5I GGATG 2 cut(s) 60, 414
BstFNI CGCG 4 cut(s) 180, 243, 275, 469
BstHHI GCGC 4 cut(s) 182, 245, 277, 778
BstMAI GTCTC 1 cut(s) 256
BstMWI GCNNNNNNNGC 8 cut(s) 50, 283, 450, 662, 731, 823, 832, 1073
BstSFI CTRYAG 1 cut(s) 312
BstUI CGCG 4 cut(s) 180, 243, 275, 469
BstV1I GCAGC 4 cut(s) 413, 652, 706, 709
BstX2I RGATCY 1 cut(s) 710
BstYI RGATCY 1 cut(s) 710
Bsu15I ATCGAT 1 cut(s) 690
BsuTUI ATCGAT 1 cut(s) 690
BtgI CCRYGG 1 cut(s) 421
BtgZI GCGATG 2 cut(s) 740, 812
BtsCI GGATG 2 cut(s) 60, 414
CciI TCATGA 1 cut(s) 349
CfoI GCGC 4 cut(s) 182, 245, 277, 778
ClaI ATCGAT 1 cut(s) 690
Csp6I GTAC 1 cut(s) 705
CviAII CATG 4 cut(s) 16, 350, 821, 1088
CviQI GTAC 1 cut(s) 705
DdeI CTNAG 4 cut(s) 300, 549, 580, 597
Eam1104I CTCTTC 1 cut(s) 877
EarI CTCTTC 1 cut(s) 877
Eco57I CTGAAG 2 cut(s) 303, 462
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 4 cut(s) 19, 353, 824, 1091
FalI AAGNNNNNCTT 2 cut(s) 987, 1019
FatI CATG 4 cut(s) 15, 349, 820, 1087
Fnu4HI GCNGC 8 cut(s) 183, 246, 427, 467, 641, 720, 723, 815
FokI GGATG 2 cut(s) 47, 401
Fsp4HI GCNGC 8 cut(s) 183, 246, 427, 467, 641, 720, 723, 815
FspBI CTAG 2 cut(s) 38, 563
GlaI GCGC 4 cut(s) 181, 244, 276, 777
GluI GCNGC 8 cut(s) 183, 246, 427, 467, 641, 720, 723, 815
GsuI CTGGAG 1 cut(s) 632
HapII CCGG 2 cut(s) 845, 905
HhaI GCGC 4 cut(s) 182, 245, 277, 778
Hin1II CATG 4 cut(s) 19, 353, 824, 1091
Hin6I GCGC 4 cut(s) 180, 243, 275, 776
HinP1I GCGC 4 cut(s) 180, 243, 275, 776
HinfI GANTC 7 cut(s) 9, 482, 494, 892, 901, 946, 1079
HpaII CCGG 2 cut(s) 845, 905
HphI GGTGA 8 cut(s) 4, 143, 197, 300, 901, 919, 1063, 1103
Hpy188I TCNGA 5 cut(s) 391, 481, 559, 619, 633
Hpy188III TCNNGA 8 cut(s) 146, 350, 406, 459, 649, 1004, 1030, 1102
Hpy99I CGWCG 3 cut(s) 407, 450, 763
HpyAV CCTTC 5 cut(s) 353, 396, 486, 724, 1042
HpyCH4III ACNGT 4 cut(s) 112, 142, 748, 913
HpyCH4V TGCA 3 cut(s) 525, 1019, 1130
HpyF10VI GCNNNNNNNGC 8 cut(s) 50, 283, 450, 662, 731, 823, 832, 1073
HpyF3I CTNAG 4 cut(s) 300, 549, 580, 597
Hsp92II CATG 4 cut(s) 19, 353, 824, 1091
HspAI GCGC 4 cut(s) 180, 243, 275, 776
LguI GCTCTTC 1 cut(s) 877
LmnI GCTCC 1 cut(s) 171
LpnPI CCDG 8 cut(s) 225, 351, 493, 504, 662, 693, 858, 918
Lsp1109I GCAGC 4 cut(s) 413, 652, 706, 709
MaeI CTAG 2 cut(s) 38, 563
MaeIII GTNAC 3 cut(s) 742, 828, 907
MbiI CCGCTC 1 cut(s) 887
MboII GAAGA 6 cut(s) 91, 338, 620, 894, 919, 941
MflI RGATCY 1 cut(s) 710
MluCI AATT 5 cut(s) 94, 667, 766, 920, 1034
MmeI TCCRAC 1 cut(s) 954
MroXI GAANNNNTTC 1 cut(s) 475
MseI TTAA 3 cut(s) 189, 290, 771
MslI CAYNNNNRTG 1 cut(s) 761
MspI CCGG 2 cut(s) 845, 905
MvnI CGCG 4 cut(s) 180, 243, 275, 469
MwoI GCNNNNNNNGC 8 cut(s) 50, 283, 450, 662, 731, 823, 832, 1073
NlaIII CATG 4 cut(s) 19, 353, 824, 1091
NmuCI GTSAC 1 cut(s) 907
NspV TTCGAA 2 cut(s) 485, 1082
PagI TCATGA 1 cut(s) 349
PciSI GCTCTTC 1 cut(s) 877
PcsI WCGNNNNNNNCGW 1 cut(s) 466
PdmI GAANNNNTTC 1 cut(s) 475
PfeI GAWTC 7 cut(s) 9, 482, 494, 892, 901, 946, 1079
PkrI GCNGC 8 cut(s) 184, 247, 428, 468, 642, 721, 724, 816
PsuI RGATCY 1 cut(s) 710
RsaI GTAC 1 cut(s) 706
RsaNI GTAC 1 cut(s) 705
RseI CAYNNNNRTG 1 cut(s) 761
SapI GCTCTTC 1 cut(s) 877
SaqAI TTAA 3 cut(s) 189, 290, 771
SatI GCNGC 8 cut(s) 183, 246, 427, 467, 641, 720, 723, 815
SfcI CTRYAG 1 cut(s) 312
SfuI TTCGAA 2 cut(s) 485, 1082
SmiMI CAYNNNNRTG 1 cut(s) 761
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 5 cut(s) 94, 667, 766, 920, 1034
SspMI CTAG 2 cut(s) 38, 563
TaaI ACNGT 4 cut(s) 112, 142, 748, 913
TaqI TCGA 5 cut(s) 233, 405, 485, 690, 1082
TasI AATT 5 cut(s) 94, 667, 766, 920, 1034
TauI GCSGC 4 cut(s) 185, 248, 469, 817
TfiI GAWTC 7 cut(s) 9, 482, 494, 892, 901, 946, 1079
Tru1I TTAA 3 cut(s) 189, 290, 771
Tru9I TTAA 3 cut(s) 189, 290, 771
TseFI GTSAC 1 cut(s) 907
TseI GCWGC 4 cut(s) 426, 640, 719, 722
Tsp45I GTSAC 1 cut(s) 907
TspDTI ATGAA 5 cut(s) 338, 374, 743, 779, 809
TspGWI ACGGA 3 cut(s) 149, 410, 668
XapI RAATTY 3 cut(s) 94, 766, 920
XmnI GAANNNNTTC 1 cut(s) 475
XspI CTAG 2 cut(s) 38, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.