Rorug05G0007000

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007782
Physical Location & Seq
Forward (+)
410443 .. 411453
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0007000.1

Sequence Viewer

Length: 357 bp
ATGCCCCCATCAAGATTTCTATGGCTTCTGCTAGCTCTGCTGTGTTTAGCCCTTACACCACGAAGATCTGGTGGACAGTTAGAGGAATGGTGCATAGCTGATGAGCAGACGCCGGCGGACGAGCTAAAGATGGCACTTGATTGGGCTTGTGAGAAGGGAGGTGCAGACTGCAGTAAGATACAAGAGAACCAAGCTTGCTACTTGCCTAATACACTGGAGCACCATGCCTCTTATGCTTTCAACAATTACTATCAAAAGTTCAAGCAGGAAGGTGCAACATGTTACTTCAATGCTGCTGCAATTGTCACTGCCCTTGATCCAAGTCATAACTCTTGCAAGTTTGAGTATCTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11 Methyltransf_29

Protein Analysis

118

Amino Acids

13.31

Weight (kDa)

5.04

Isoelectric Point (pI)

55.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 30 - 100 1.5e-20 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 116
AclWI GGATC 1 cut(s) 311
AcyI GRCGYC 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 278
AgsI TTSAA 3 cut(s) 241, 262, 289
AluBI AGCT 4 cut(s) 35, 98, 124, 194
AluI AGCT 4 cut(s) 35, 98, 124, 194
Alw21I GWGCWC 1 cut(s) 222
AlwI GGATC 1 cut(s) 311
ApeKI GCWGC 2 cut(s) 293, 296
AsuNHI GCTAGC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 280, 283
BccI CCATC 2 cut(s) 16, 124
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 169
BglII AGATCT 1 cut(s) 65
BisI GCNGC 2 cut(s) 294, 297
BlsI GCNGC 2 cut(s) 295, 298
BmtI GCTAGC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 219
BseXI GCAGC 2 cut(s) 280, 283
BsgI GTGCAG 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 65, 316
BspACI CCGC 1 cut(s) 116
BspMAI CTGCAG 1 cut(s) 173
BspOI GCTAGC 1 cut(s) 35
BspPI GGATC 1 cut(s) 311
BsrFI RCCGGY 1 cut(s) 112
BsrI ACTGG 1 cut(s) 219
BssAI RCCGGY 1 cut(s) 112
BssMI GATC 2 cut(s) 65, 316
BssNI GRCGYC 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 110
BstC8I GCNNGC 3 cut(s) 33, 114, 196
BstKTI GATC 2 cut(s) 68, 319
BstMBI GATC 2 cut(s) 65, 316
BstMWI GCNNNNNNNGC 2 cut(s) 37, 233
BstNSI RCATGY 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 280, 283
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 2 cut(s) 212, 306
Cac8I GCNNGC 3 cut(s) 33, 114, 196
Cfr10I RCCGGY 1 cut(s) 112
CseI GACGC 1 cut(s) 118
CviAII CATG 2 cut(s) 224, 279
CviJI RGCY 7 cut(s) 25, 35, 50, 98, 124, 146, 194
CviKI_1 RGCY 7 cut(s) 25, 35, 50, 98, 124, 146, 194
DpnI GATC 2 cut(s) 67, 318
DpnII GATC 2 cut(s) 65, 316
EciI GGCGGA 1 cut(s) 131
FaeI CATG 2 cut(s) 227, 282
FaiI YATR 6 cut(s) 22, 95, 225, 234, 280, 327
FatI CATG 2 cut(s) 223, 278
Fnu4HI GCNGC 2 cut(s) 294, 297
Fsp4HI GCNGC 2 cut(s) 294, 297
FspBI CTAG 1 cut(s) 32
GluI GCNGC 2 cut(s) 294, 297
GsuI CTGGAG 1 cut(s) 236
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 2 cut(s) 227, 282
HindIII AAGCTT 1 cut(s) 192
HpaII CCGG 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 74
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 2 cut(s) 148, 263
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4V TGCA 6 cut(s) 93, 164, 171, 275, 299, 336
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 233
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 2 cut(s) 227, 282
KroI GCCGGC 1 cut(s) 112
KroNI GCCGGC 1 cut(s) 114
Kzo9I GATC 2 cut(s) 65, 316
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 4 cut(s) 54, 126, 200, 251
Lsp1109I GCAGC 2 cut(s) 280, 283
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 2 cut(s) 281, 304
MalI GATC 2 cut(s) 67, 318
MboI GATC 2 cut(s) 65, 316
MboII GAAGA 2 cut(s) 75, 341
MfeI CAATTG 1 cut(s) 300
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 2 cut(s) 244, 300
MnlI CCTC 3 cut(s) 76, 152, 238
MreI CGCCGGCG 1 cut(s) 112
MroNI GCCGGC 1 cut(s) 112
MspI CCGG 1 cut(s) 113
MunI CAATTG 1 cut(s) 300
MwoI GCNNNNNNNGC 2 cut(s) 37, 233
NaeI GCCGGC 1 cut(s) 114
NdeII GATC 2 cut(s) 65, 316
NgoMIV GCCGGC 1 cut(s) 112
NheI GCTAGC 1 cut(s) 31
NlaIII CATG 2 cut(s) 227, 282
NmuCI GTSAC 1 cut(s) 304
NspI RCATGY 1 cut(s) 282
PciI ACATGT 1 cut(s) 278
PdiI GCCGGC 1 cut(s) 114
PkrI GCNGC 2 cut(s) 295, 298
PscI ACATGT 1 cut(s) 278
PstI CTGCAG 1 cut(s) 173
PsuI RGATCY 1 cut(s) 65
SatI GCNGC 2 cut(s) 294, 297
Sau3AI GATC 2 cut(s) 65, 316
SduI GDGCHC 1 cut(s) 222
SetI ASST 6 cut(s) 37, 100, 126, 163, 196, 274
SfcI CTRYAG 1 cut(s) 169
SgrAI CRCCGGYG 1 cut(s) 112
Sse9I AATT 2 cut(s) 244, 300
SsiI CCGC 1 cut(s) 116
SspMI CTAG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 78
TasI AATT 2 cut(s) 244, 300
TscAI CASTG 2 cut(s) 219, 313
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 293, 296
Tsp45I GTSAC 1 cut(s) 304
TspRI CASTG 2 cut(s) 219, 313
XceI RCATGY 1 cut(s) 282
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.