AT1G29850

DNA-binding protein DDB_G0278111-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007782
Physical Location & Seq
Forward (+)
10447347 .. 10449969
2623 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29850.3

Sequence Viewer

Length: 390 bp
ATGGCTGATCCTGAACTAGAAGCTATTAGACAGAGGAGAATGCAAGAGCTCATGGCTCGACAAGGCATGGGTAAGCAGGGCAATCAGCAGAATCCAGAGCAAGAGAAACAGCAGGAAGATGCTAAAAGGGAAGCTGATGAACGTAGGCAAATGATGCTTAGTCAAGTATTGTCTTCTCAAGCCCGAGAGAGAATTGCTCGAATTGCTCTGGTGAAACCTGAGAAAGCTAGAGGTGTGGAGGATGTTATTTTGAGGGCTGCTCAGATGGGACAGATAGTTGAGAAGGTTTCTGAGGAACGGCTTATAACACTGTTGGAACAAATAAACAGCCAAACTACCAAGCAAACGAAAGTCACGTACCAACGGCGCCGTGGGGTGGACGACGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005539 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006915 GO:0008047 GO:0008092 GO:0008150 GO:0008201 GO:0008219 GO:0008285 GO:0009719 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010698 GO:0010821 GO:0010822 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015631 GO:0019222 GO:0023051 GO:0023056 GO:0030162 GO:0030234 GO:0031323 GO:0031325 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033043 GO:0033157 GO:0042127 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045862 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051222 GO:0051223 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060341 GO:0065007 GO:0065009 GO:0070201 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071559 GO:0071560 GO:0080090 GO:0090087 GO:0090199 GO:0090200 GO:0090316 GO:0097367 GO:0098772 GO:1901681 GO:1903214 GO:1903332 GO:1903333 GO:1903533 GO:1903636 GO:1903638 GO:1903644 GO:1903645 GO:1903747 GO:1903749 GO:1903827 GO:1903829 GO:1903955 GO:1904589 GO:1904591 GO:1904951 GO:1905475 GO:1905477 GO:2000116 GO:2001056 GO:2001233 GO:2001235
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsDNA_bind

Protein Analysis

129

Amino Acids

14.97

Weight (kDa)

9.09

Isoelectric Point (pI)

61.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsDNA_bind PF01984 4 - 108 8.4e-27 Double-stranded DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 305
AccB1I GGYRCC 1 cut(s) 366
AclWI GGATC 1 cut(s) 2
AcyI GRCGYC 1 cut(s) 367
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 1 cut(s) 376
AluBI AGCT 4 cut(s) 23, 49, 134, 227
AluI AGCT 4 cut(s) 23, 49, 134, 227
Alw21I GWGCWC 1 cut(s) 51
AlwI GGATC 1 cut(s) 2
Ama87I CYCGRG 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 369
AsuHPI GGTGA 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 183
BanI GGYRCC 1 cut(s) 366
BanII GRGCYC 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 259
BceAI ACGGC 3 cut(s) 314, 354, 380
BfaI CTAG 2 cut(s) 17, 228
BfoI RGCGCY 1 cut(s) 370
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 368
BmsI GCATC 2 cut(s) 109, 144
BpiI GAAGAC 1 cut(s) 165
BplI GAGNNNNNCTC 4 cut(s) 181, 213, 244, 276
BpuEI CTTGAG 1 cut(s) 162
BsaAI YACGTR 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 367
BsaJI CCNNGG 1 cut(s) 370
Bsc4I CCNNNNNNNGG 1 cut(s) 376
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMII CTCAG 3 cut(s) 210, 275, 282
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 244
BshNI GGYRCC 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 282
BsmI GAATGC 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 1 cut(s) 7
BspCNI CTCAG 3 cut(s) 211, 274, 283
BspLI GGNNCC 1 cut(s) 368
BspPI GGATC 1 cut(s) 2
BspT107I GGYRCC 1 cut(s) 366
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 1 cut(s) 7
BssNI GRCGYC 1 cut(s) 367
Bst4CI ACNGT 1 cut(s) 312
BstACI GRCGYC 1 cut(s) 367
BstAPI GCANNNNNTGC 1 cut(s) 154
BstBAI YACGTR 1 cut(s) 357
BstDEI CTNAG 4 cut(s) 158, 219, 261, 291
BstDSI CCRYGG 1 cut(s) 370
BstF5I GGATG 1 cut(s) 247
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 2 cut(s) 154, 203
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 370
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 308
CfoI GCGC 1 cut(s) 369
Csp6I GTAC 1 cut(s) 358
CviAII CATG 2 cut(s) 52, 67
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 4 cut(s) 158, 219, 261, 291
DinI GGCGCC 1 cut(s) 368
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Ecl136II GAGCTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 51
EgeI GGCGCC 1 cut(s) 368
EheI GGCGCC 1 cut(s) 368
FaeI CATG 2 cut(s) 55, 70
FaiI YATR 3 cut(s) 53, 68, 305
FaqI GGGAC 1 cut(s) 282
FatI CATG 2 cut(s) 51, 66
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 2 cut(s) 17, 228
GlaI GCGC 1 cut(s) 368
GluI GCNGC 1 cut(s) 258
HaeII RGCGCY 1 cut(s) 370
HhaI GCGC 1 cut(s) 369
Hin1I GRCGYC 1 cut(s) 367
Hin1II CATG 2 cut(s) 55, 70
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HinfI GANTC 1 cut(s) 91
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 2 cut(s) 264, 292
Hpy188III TCNNGA 2 cut(s) 11, 95
Hpy8I GTNNAC 1 cut(s) 379
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4IV ACGT 2 cut(s) 142, 356
HpyCH4V TGCA 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 203
HpyF3I CTNAG 4 cut(s) 158, 219, 261, 291
HpySE526I ACGT 2 cut(s) 142, 356
Hsp92I GRCGYC 1 cut(s) 367
Hsp92II CATG 2 cut(s) 55, 70
HspAI GCGC 1 cut(s) 367
KasI GGCGCC 1 cut(s) 366
Kzo9I GATC 1 cut(s) 7
LpnPI CCDG 6 cut(s) 24, 62, 98, 108, 194, 231
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 2 cut(s) 109, 144
MaeI CTAG 2 cut(s) 17, 228
MaeII ACGT 2 cut(s) 142, 356
MaeIII GTNAC 1 cut(s) 352
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 2 cut(s) 128, 165
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 2 cut(s) 192, 201
Mly113I GGCGCC 1 cut(s) 367
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 5 cut(s) 27, 224, 232, 246, 286
Mva1269I GAATGC 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 154, 203
NarI GGCGCC 1 cut(s) 367
NdeII GATC 1 cut(s) 7
NlaIII CATG 2 cut(s) 55, 70
NlaIV GGNNCC 1 cut(s) 368
NmuCI GTSAC 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 353
PctI GAATGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 259
PluTI GGCGCC 1 cut(s) 370
Ppu21I YACGTR 1 cut(s) 357
PsiI TTATAA 1 cut(s) 305
Psp124BI GAGCTC 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 368
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SacI GAGCTC 1 cut(s) 51
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 1 cut(s) 7
SduI GDGCHC 1 cut(s) 51
SetI ASST 9 cut(s) 25, 51, 136, 145, 220, 229, 235, 288, 359
SfaNI GCATC 2 cut(s) 109, 144
SfoI GGCGCC 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 2 cut(s) 192, 201
SspDI GGCGCC 1 cut(s) 366
SspMI CTAG 2 cut(s) 17, 228
SstI GAGCTC 1 cut(s) 51
TaaI ACNGT 1 cut(s) 312
TaiI ACGT 2 cut(s) 145, 359
TaqI TCGA 2 cut(s) 58, 199
TasI AATT 2 cut(s) 192, 201
TfiI GAWTC 1 cut(s) 91
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 1 cut(s) 315
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
XspI CTAG 2 cut(s) 17, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.