Rroxscaffold_1G00063500

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0007782
Physical Location & Seq
Reverse (-)
85370203 .. 85372360
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063500.1

Sequence Viewer

Length: 522 bp
ATGATTGAAAACCTCTCAAGGGTATCTGTTGTAACTCCCCTCAATTATATAAAGATTTCAGAATTGGCGTCCGACCAACGCAAACCCAGCTCGGAGAACTTAGATCTCTACTCACAACTTGAATCAATGGCTGATCCCGAACTCGAAGCAATCAGACAAAGAAGAATGCAGGAGCTTATGGCTCAACAGGGCGCTGGAGGGGCCAGAGGGCAGCAAAACCCTGAACAGCAGAAGGCAAATGATGATGCCAAGAGGGAGGCAGAAGAACGGAGGCAGATGATGCTTAGTCAGATTTTGTCATCTGAAGCTCGAGAAAGACTTGCTCGAATTGCTTTGGTGAAACCTGAGAAGGCAAGAGGTGTTGAAGATGTCATACTGAGAGCTGCCCAAATGGGCCAAATAGCTGAGAAGGTTACCGAGGAGAGGCTTATTTCATTGTTGGAACAGATCAACAACCAAACAACCAAGCAGACTAAAGTCACTATTCAGAGGCGTCGGAATGTTCTCGAAGATGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005539 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006915 GO:0008047 GO:0008092 GO:0008150 GO:0008201 GO:0008219 GO:0008285 GO:0009719 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010698 GO:0010821 GO:0010822 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015631 GO:0019222 GO:0023051 GO:0023056 GO:0030162 GO:0030234 GO:0031323 GO:0031325 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033043 GO:0033157 GO:0042127 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045862 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051222 GO:0051223 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060341 GO:0065007 GO:0065009 GO:0070201 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071559 GO:0071560 GO:0080090 GO:0090087 GO:0090199 GO:0090200 GO:0090316 GO:0097367 GO:0098772 GO:1901681 GO:1903214 GO:1903332 GO:1903333 GO:1903533 GO:1903636 GO:1903638 GO:1903644 GO:1903645 GO:1903747 GO:1903749 GO:1903827 GO:1903829 GO:1903955 GO:1904589 GO:1904591 GO:1904951 GO:1905475 GO:1905477 GO:2000116 GO:2001056 GO:2001233 GO:2001235
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsDNA_bind

Protein Analysis

173

Amino Acids

19.74

Weight (kDa)

5.5

Isoelectric Point (pI)

57.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsDNA_bind PF01984 51 - 165 1.6e-31 Double-stranded DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 324
AcyI GRCGYC 2 cut(s) 68, 493
AfiI CCNNNNNNNGG 2 cut(s) 19, 423
AgsI TTSAA 3 cut(s) 8, 122, 365
AluBI AGCT 5 cut(s) 90, 175, 308, 383, 404
AluI AGCT 5 cut(s) 90, 175, 308, 383, 404
AlwI GGATC 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 309
AoxI GGCC 2 cut(s) 201, 394
ApeKI GCWGC 2 cut(s) 211, 383
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 201, 394
AsuHPI GGTGA 1 cut(s) 349
AvaI CYCGRG 1 cut(s) 309
BarI GAAGNNNNNNTAC 2 cut(s) 357, 389
BbvI GCAGC 2 cut(s) 223, 370
BfoI RGCGCY 1 cut(s) 195
BglII AGATCT 1 cut(s) 103
BisI GCNGC 2 cut(s) 212, 384
BlsI GCNGC 2 cut(s) 213, 385
BmeT110I CYCGRG 1 cut(s) 309
BmgT120I GGNCC 2 cut(s) 201, 394
BmiI GGNNCC 1 cut(s) 202
BmsI GCATC 2 cut(s) 235, 270
BoxI GACNNNNGTC 1 cut(s) 476
BpmI CTGGAG 1 cut(s) 216
BsaHI GRCGYC 2 cut(s) 68, 493
BsaJI CCNNGG 1 cut(s) 417
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 423
BseDI CCNNGG 1 cut(s) 417
BseLI CCNNNNNNNGG 2 cut(s) 19, 423
BseMII CTCAG 3 cut(s) 336, 368, 396
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 2 cut(s) 223, 370
BseYI CCCAGC 1 cut(s) 86
BshFI GGCC 2 cut(s) 203, 396
BsiHKCI CYCGRG 1 cut(s) 309
BslI CCNNNNNNNGG 2 cut(s) 19, 423
BsmI GAATGC 1 cut(s) 171
BsnI GGCC 2 cut(s) 203, 396
BsoBI CYCGRG 1 cut(s) 309
Bsp143I GATC 3 cut(s) 103, 133, 447
BspANI GGCC 2 cut(s) 203, 396
BspCNI CTCAG 3 cut(s) 337, 369, 397
BspLI GGNNCC 1 cut(s) 202
BspPI GGATC 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 3 cut(s) 103, 133, 447
BssNI GRCGYC 2 cut(s) 68, 493
BstACI GRCGYC 2 cut(s) 68, 493
BstAPI GCANNNNNTGC 1 cut(s) 280
BstDEI CTNAG 5 cut(s) 100, 284, 345, 377, 405
BstEII GGTNACC 1 cut(s) 412
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 3 cut(s) 106, 136, 450
BstMBI GATC 3 cut(s) 103, 133, 447
BstMWI GCNNNNNNNGC 4 cut(s) 87, 200, 280, 329
BstPAI GACNNNNGTC 1 cut(s) 476
BstPI GGTNACC 1 cut(s) 412
BstV1I GCAGC 2 cut(s) 223, 370
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 2 cut(s) 203, 396
CfoI GCGC 1 cut(s) 194
Cfr13I GGNCC 2 cut(s) 201, 394
CseI GACGC 2 cut(s) 57, 482
DdeI CTNAG 5 cut(s) 100, 284, 345, 377, 405
DpnI GATC 3 cut(s) 105, 135, 449
DpnII GATC 3 cut(s) 103, 133, 447
Eco57I CTGAAG 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 309
Eco91I GGTNACC 1 cut(s) 412
EcoO65I GGTNACC 1 cut(s) 412
FaiI YATR 4 cut(s) 48, 50, 179, 374
Fnu4HI GCNGC 2 cut(s) 212, 384
Fsp4HI GCNGC 2 cut(s) 212, 384
GlaI GCGC 1 cut(s) 193
GluI GCNGC 2 cut(s) 212, 384
GsaI CCCAGC 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 2 cut(s) 203, 396
HgaI GACGC 2 cut(s) 57, 482
HhaI GCGC 1 cut(s) 194
Hin1I GRCGYC 2 cut(s) 68, 493
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 1 cut(s) 122
HphI GGTGA 1 cut(s) 349
Hpy188I TCNGA 8 cut(s) 61, 73, 94, 155, 291, 304, 489, 498
Hpy188III TCNNGA 3 cut(s) 137, 311, 506
Hpy99I CGWCG 1 cut(s) 498
HpyAV CCTTC 3 cut(s) 226, 343, 403
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 200, 280, 329
HpyF3I CTNAG 5 cut(s) 100, 284, 345, 377, 405
Hsp92I GRCGYC 2 cut(s) 68, 493
HspAI GCGC 1 cut(s) 192
Kzo9I GATC 3 cut(s) 103, 133, 447
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 7 cut(s) 100, 155, 173, 180, 217, 234, 357
Lsp1109I GCAGC 2 cut(s) 223, 370
LweI GCATC 2 cut(s) 235, 270
MaeIII GTNAC 3 cut(s) 31, 412, 478
MalI GATC 3 cut(s) 105, 135, 449
MboI GATC 3 cut(s) 103, 133, 447
MboII GAAGA 4 cut(s) 174, 275, 377, 521
MflI RGATCY 1 cut(s) 103
MluCI AATT 3 cut(s) 43, 62, 327
MmeI TCCRAC 3 cut(s) 96, 420, 476
Mva1269I GAATGC 1 cut(s) 171
MwoI GCNNNNNNNGC 4 cut(s) 87, 200, 280, 329
NdeII GATC 3 cut(s) 103, 133, 447
NlaIV GGNNCC 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 478
PaeR7I CTCGAG 1 cut(s) 309
PctI GAATGC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 2 cut(s) 213, 385
PshAI GACNNNNGTC 1 cut(s) 476
PspEI GGTNACC 1 cut(s) 412
PspFI CCCAGC 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 2 cut(s) 201, 394
PsuI RGATCY 1 cut(s) 103
SatI GCNGC 2 cut(s) 212, 384
Sau3AI GATC 3 cut(s) 103, 133, 447
Sau96I GGNCC 2 cut(s) 201, 394
SetI ASST 9 cut(s) 15, 92, 177, 310, 346, 361, 385, 406, 414
SfaNI GCATC 2 cut(s) 235, 270
Sfr274I CTCGAG 1 cut(s) 309
SlaI CTCGAG 1 cut(s) 309
SmlI CTYRAG 2 cut(s) 16, 309
SmoI CTYRAG 2 cut(s) 16, 309
Sse9I AATT 3 cut(s) 43, 62, 327
TaqI TCGA 4 cut(s) 144, 310, 325, 507
TasI AATT 3 cut(s) 43, 62, 327
TfiI GAWTC 1 cut(s) 122
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 2 cut(s) 211, 383
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 1 cut(s) 423
TspGWI ACGGA 1 cut(s) 283
XhoI CTCGAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.