RchiOBHm_Chr5g0013081

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0007782
Physical Location & Seq
Forward (+)
8864334 .. 8867341
3008 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29362

Sequence Viewer

Length: 396 bp
ATGGCTGATCCCGAACTCGAAGCAATCAGACAAAGAAGAATGCAGGAGCTTATGGCTCAACAAGGCGCTGGAGGGGCCAGAGGGCAGCAAAACCCTGAACAGCAGAAGGCAAATGATGATGCCAAGAGGGAGGCAGAAGAACGGAGGCAGATGATGCTTAGTCAGATTTTGTCATCTGAAGCTCGAGAAAGACTTGCTCGAATTGCTTTGGTGAAACCTGAGAAGGCAAGAGGTGTTGAAGATGTCATACTGAGAGCTGCTCAAATGGGCCAAATAGCTGAGAAGGTTACCGAGGAGAGGCTTATTTCATTGTTGGAACAGATCAACAACCAAACAACCAAGCAGACTAAAGTCACTATTCAGAGGCGTCGGAATGTTCTTGAAGATGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005539 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006915 GO:0008047 GO:0008092 GO:0008150 GO:0008201 GO:0008219 GO:0008285 GO:0009719 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010698 GO:0010821 GO:0010822 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015631 GO:0019222 GO:0023051 GO:0023056 GO:0030162 GO:0030234 GO:0031323 GO:0031325 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033043 GO:0033157 GO:0042127 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045862 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051222 GO:0051223 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060341 GO:0065007 GO:0065009 GO:0070201 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071559 GO:0071560 GO:0080090 GO:0090087 GO:0090199 GO:0090200 GO:0090316 GO:0097367 GO:0098772 GO:1901681 GO:1903214 GO:1903332 GO:1903333 GO:1903533 GO:1903636 GO:1903638 GO:1903644 GO:1903645 GO:1903747 GO:1903749 GO:1903827 GO:1903829 GO:1903955 GO:1904589 GO:1904591 GO:1904951 GO:1905475 GO:1905477 GO:2000116 GO:2001056 GO:2001233 GO:2001235
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsDNA_bind

Protein Analysis

131

Amino Acids

14.99

Weight (kDa)

6.42

Isoelectric Point (pI)

61.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsDNA_bind PF01984 9 - 123 6.4e-32 Double-stranded DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 2
AcuI CTGAAG 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 367
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 2 cut(s) 239, 383
AluBI AGCT 4 cut(s) 49, 182, 257, 278
AluI AGCT 4 cut(s) 49, 182, 257, 278
AlwI GGATC 1 cut(s) 2
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 2 cut(s) 75, 268
ApeKI GCWGC 2 cut(s) 85, 257
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 75, 268
AsuHPI GGTGA 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 183
BarI GAAGNNNNNNTAC 2 cut(s) 231, 263
BbvI GCAGC 2 cut(s) 97, 244
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 2 cut(s) 86, 258
BlsI GCNGC 2 cut(s) 87, 259
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 2 cut(s) 75, 268
BmiI GGNNCC 1 cut(s) 76
BmsI GCATC 2 cut(s) 109, 144
BoxI GACNNNNGTC 1 cut(s) 350
BplI GAGNNNNNCTC 2 cut(s) 244, 276
BpmI CTGGAG 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 367
BsaJI CCNNGG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 3 cut(s) 210, 242, 270
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 2 cut(s) 97, 244
BshFI GGCC 2 cut(s) 77, 270
BsiHKCI CYCGRG 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 297
BsmI GAATGC 1 cut(s) 45
BsnI GGCC 2 cut(s) 77, 270
BsoBI CYCGRG 1 cut(s) 183
Bsp143I GATC 2 cut(s) 7, 321
BspANI GGCC 2 cut(s) 77, 270
BspCNI CTCAG 3 cut(s) 211, 243, 271
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 2
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 2 cut(s) 7, 321
BssNI GRCGYC 1 cut(s) 367
BstACI GRCGYC 1 cut(s) 367
BstAPI GCANNNNNTGC 1 cut(s) 154
BstDEI CTNAG 4 cut(s) 158, 219, 251, 279
BstEII GGTNACC 1 cut(s) 286
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 2 cut(s) 10, 324
BstMBI GATC 2 cut(s) 7, 321
BstMWI GCNNNNNNNGC 3 cut(s) 74, 154, 203
BstPAI GACNNNNGTC 1 cut(s) 350
BstPI GGTNACC 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 97, 244
BsuRI GGCC 2 cut(s) 77, 270
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 75, 268
CseI GACGC 1 cut(s) 356
CviJI RGCY 9 cut(s) 5, 49, 56, 77, 182, 257, 270, 278, 301
CviKI_1 RGCY 9 cut(s) 5, 49, 56, 77, 182, 257, 270, 278, 301
DdeI CTNAG 4 cut(s) 158, 219, 251, 279
DpnI GATC 2 cut(s) 9, 323
DpnII GATC 2 cut(s) 7, 321
Eco57I CTGAAG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 183
Eco91I GGTNACC 1 cut(s) 286
EcoO65I GGTNACC 1 cut(s) 286
FaiI YATR 2 cut(s) 53, 248
Fnu4HI GCNGC 2 cut(s) 86, 258
Fsp4HI GCNGC 2 cut(s) 86, 258
GlaI GCGC 1 cut(s) 67
GluI GCNGC 2 cut(s) 86, 258
GsuI CTGGAG 1 cut(s) 90
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 2 cut(s) 77, 270
HgaI GACGC 1 cut(s) 356
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 367
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HphI GGTGA 1 cut(s) 223
Hpy188I TCNGA 5 cut(s) 29, 165, 178, 363, 372
Hpy188III TCNNGA 3 cut(s) 11, 185, 380
Hpy99I CGWCG 1 cut(s) 372
HpyAV CCTTC 3 cut(s) 100, 217, 277
HpyCH4V TGCA 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 154, 203
HpyF3I CTNAG 4 cut(s) 158, 219, 251, 279
Hsp92I GRCGYC 1 cut(s) 367
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 2 cut(s) 7, 321
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 5 cut(s) 29, 54, 91, 108, 231
Lsp1109I GCAGC 2 cut(s) 97, 244
LweI GCATC 2 cut(s) 109, 144
MaeIII GTNAC 2 cut(s) 286, 352
MalI GATC 2 cut(s) 9, 323
MboI GATC 2 cut(s) 7, 321
MboII GAAGA 4 cut(s) 48, 149, 251, 395
MluCI AATT 1 cut(s) 201
MmeI TCCRAC 2 cut(s) 294, 350
MnlI CCTC 9 cut(s) 65, 74, 120, 124, 138, 224, 286, 291, 357
Mva1269I GAATGC 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 74, 154, 203
NdeII GATC 2 cut(s) 7, 321
NlaIV GGNNCC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 352
PaeR7I CTCGAG 1 cut(s) 183
PctI GAATGC 1 cut(s) 45
PkrI GCNGC 2 cut(s) 87, 259
PshAI GACNNNNGTC 1 cut(s) 350
PspEI GGTNACC 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 2 cut(s) 75, 268
SatI GCNGC 2 cut(s) 86, 258
Sau3AI GATC 2 cut(s) 7, 321
Sau96I GGNCC 2 cut(s) 75, 268
SetI ASST 7 cut(s) 51, 184, 220, 235, 259, 280, 288
SfaNI GCATC 2 cut(s) 109, 144
Sfr274I CTCGAG 1 cut(s) 183
SlaI CTCGAG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 1 cut(s) 201
TaqI TCGA 3 cut(s) 18, 184, 199
TasI AATT 1 cut(s) 201
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 85, 257
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 297
TspGWI ACGGA 1 cut(s) 157
XhoI CTCGAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.