MD09G1183100.v1.1

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0007782
Physical Location & Seq
Forward (+)
15745996 .. 15746241
246 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1183100.v1.1.491

Sequence Viewer

Length: 246 bp
ATGATGCTTAGTCAGATTGTGTCAGGCGAAGCTCCTGAAAGAATTGCTAGAATTGCTTTGGTGAAACCTGAGAAGGCAAGGGGTGTTGAAGATGTTATACTGAGAGATGCTCAAATGGGCCAGATAGTTGAGAAGGTATCTGAGGAGAGGCTCATTTCGTTGTTGGAGCAGATCAACAACCAAACAAACAAGCAGACCAAAGTCACTATTCCGAGGCGTCGGAGCGTCCTTGAGGATGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005539 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006915 GO:0008047 GO:0008092 GO:0008150 GO:0008201 GO:0008219 GO:0008285 GO:0009719 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010698 GO:0010821 GO:0010822 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015631 GO:0019222 GO:0023051 GO:0023056 GO:0030162 GO:0030234 GO:0031323 GO:0031325 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033043 GO:0033157 GO:0042127 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045862 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051222 GO:0051223 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060341 GO:0065007 GO:0065009 GO:0070201 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071559 GO:0071560 GO:0080090 GO:0090087 GO:0090199 GO:0090200 GO:0090316 GO:0097367 GO:0098772 GO:1901681 GO:1903214 GO:1903332 GO:1903333 GO:1903533 GO:1903636 GO:1903638 GO:1903644 GO:1903645 GO:1903747 GO:1903749 GO:1903827 GO:1903829 GO:1903955 GO:1904589 GO:1904591 GO:1904951 GO:1905475 GO:1905477 GO:2000116 GO:2001056 GO:2001233 GO:2001235
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsDNA_bind

Protein Analysis

82

Amino Acids

9.2

Weight (kDa)

5.49

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsDNA_bind PF01984 2 - 73 1e-21 Double-stranded DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 217
AgsI TTSAA 1 cut(s) 89
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
AoxI GGCC 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 73
BarI GAAGNNNNNNTAC 2 cut(s) 81, 113
BfaI CTAG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 118
BmsI GCATC 1 cut(s) 97
BoxI GACNNNNGTC 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 94, 126
BsaHI GRCGYC 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 212
BseGI GGATG 1 cut(s) 241
BseMII CTCAG 3 cut(s) 60, 92, 132
BseRI GAGGAG 1 cut(s) 158
BshFI GGCC 1 cut(s) 120
BsnI GGCC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 171
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 3 cut(s) 61, 93, 133
BssECI CCNNGG 1 cut(s) 212
BssMI GATC 1 cut(s) 171
BssNI GRCGYC 1 cut(s) 217
BstACI GRCGYC 1 cut(s) 217
BstDEI CTNAG 4 cut(s) 8, 69, 101, 141
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 1 cut(s) 174
BstMBI GATC 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstPAI GACNNNNGTC 1 cut(s) 200
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 118
CseI GACGC 2 cut(s) 206, 214
CviJI RGCY 3 cut(s) 32, 120, 151
CviKI_1 RGCY 3 cut(s) 32, 120, 151
DdeI CTNAG 4 cut(s) 8, 69, 101, 141
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
FaiI YATR 1 cut(s) 98
FspBI CTAG 1 cut(s) 48
HaeIII GGCC 1 cut(s) 120
HgaI GACGC 2 cut(s) 206, 214
Hin1I GRCGYC 1 cut(s) 217
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 4 cut(s) 15, 142, 213, 222
Hpy188III TCNNGA 1 cut(s) 35
Hpy99I CGWCG 1 cut(s) 222
HpyAV CCTTC 2 cut(s) 67, 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 4 cut(s) 8, 69, 101, 141
Hsp92I GRCGYC 1 cut(s) 217
Kzo9I GATC 1 cut(s) 171
LmnI GCTCC 3 cut(s) 37, 166, 222
LpnPI CCDG 4 cut(s) 9, 48, 81, 134
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 202
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MboII GAAGA 1 cut(s) 101
MluCI AATT 2 cut(s) 42, 51
MmeI TCCRAC 2 cut(s) 144, 200
MnlI CCTC 4 cut(s) 136, 141, 207, 226
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 202
PshAI GACNNNNGTC 1 cut(s) 200
PspPI GGNCC 1 cut(s) 118
Sau3AI GATC 1 cut(s) 171
Sau96I GGNCC 1 cut(s) 118
SetI ASST 3 cut(s) 34, 70, 138
SfaNI GCATC 1 cut(s) 97
SgeI CNNG 9 cut(s) 36, 47, 60, 80, 90, 133, 202, 225, 242
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 2 cut(s) 42, 51
SspMI CTAG 1 cut(s) 48
TasI AATT 2 cut(s) 42, 51
TseFI GTSAC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 202
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.