Rw5G008830

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0014427
Physical Location & Seq
Reverse (-)
9522935 .. 9525933
2999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G008830.1

Sequence Viewer

Length: 1119 bp
ATGGGTTTCACAATGGGTCTCAACCTGCTTCTCTTAATGGCCATGGTGGCCACCAACATTCTCTCCCTCTACCACCTCTCCTCCACCATCCAATCCCCCAAACAATCCCCCCCTCCCAAGAACCCAGTCCCTGATCACCTCCTCCACCAGCTCCACACCATACGCGCCACCATCAACCACCTCACGCGCAGCCACCCACCCCCACGCGCCGCTTCGTCTTCCTCCTCCACCTTCAAACCCTCCTCGGATCTCCTCCTCTACTCCCGCCTCTCCCCAATAGCCTCCTCCTGCCACAACCACCCTGACCTCCTCAACAAGTACATGGACTACACACCCTTCTCGCTCTGCCCCACCGACTCCGACATTGCCGAGACTCTCATCCTCCGCGGCTGCCACCCCCTCCCTCGCCGCCGATGCTTCTCCAGAACGCCGCAGAAGCCCACATCTTCACTTTCTCATAACCCTTTCGCTTCTCCTCTCCCGGATCAAAATGTCTTATGGGACAAGTACACCTGCAAGAGCTTCAGCTGCCTCAACCGCCACCATCCCACCGCCGGTTTCGATTTGAACGGCGAGCTGACCAATTTTATGACCTACAAGTCCGAGCTGGACCTCCCCATCCCGCAGCTCTTCCAAATCGCCAAGGCCGCCGGAGCTGTCCTCCGCCTCGGCCTCGACATCGGCGGCGGCACCGGGACCTTCGCCGCGAGAATGAAGCTGTACAATGTGACGGTTGTTACCACAACGATGAATTTTGGCGCGCCGAACAATGAGGCGGTGGCGCTGAGGGGGCTGGTGCCGCTGCACGTGCCGCTGCAGCAGCGGTTTCCGTTGTTCGATGGGGTGATGGATCTGGTGCGGTGCGGGCACGCGGTGAATAGGTGGATTCCGGTGACGGCGTTGGAGTTTTTGTTGTATGATGCGGATAGGGTGTTGAGGGGAGGAGGGTACTTGTGGTTGGATCATTTCTTCAGCAAGGGGGTGGATCTCGAGAAGGTTTTCGGGCCGTTGATTGGGAAGTTGGGTTACCGGAGAGTGAAGTGGGCGACGGCGAGTAAGAATGAGAAGAATGGGGAGGTTTACTTGACTGCTCTTCTGCAAAAGCCTGTCTCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11 Methyltransf_29

Protein Analysis

372

Amino Acids

41.31

Weight (kDa)

9.49

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014427)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29790 AT1G29790
fragaria_vesca FvH4_3g06240 FvH4_3g06240
malus_domestica MD05G1290600.v1.1 MD16G1203100.v1.1
prunus_persica Prupe.4G075100_v2.0.a1
pyrus_communis pycom10g22250
rosa_chinensis RchiOBHm_Chr5g0013071
rosa_laevigata RLG00000031983
rosa_multiflora Rmu_sc0003892.1_g000015
rosa_rugosa Rorug05G0007000
rosa_samantha Rh5AG101000 Rh5BG097600 Rh5CG109700 Rh5DG096600
rosa_wichuraiana Rw5G008830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 521
AasI GACNNNNNNGTC 1 cut(s) 598
Acc36I ACCTGC 2 cut(s) 33, 521
AccB1I GGYRCC 2 cut(s) 689, 796
AccII CGCG 7 cut(s) 165, 187, 207, 387, 707, 761, 872
AclWI GGATC 5 cut(s) 255, 492, 858, 969, 993
AcoI YGGCCR 2 cut(s) 39, 48
AcsI RAATTY 1 cut(s) 751
AcuI CTGAAG 2 cut(s) 508, 955
AcvI CACGTG 1 cut(s) 808
AdeI CACNNNGTG 1 cut(s) 874
AfaI GTAC 4 cut(s) 320, 509, 722, 950
AfiI CCNNNNNNNGG 2 cut(s) 554, 1013
AgsI TTSAA 2 cut(s) 235, 568
AluBI AGCT 8 cut(s) 151, 522, 528, 577, 607, 628, 656, 718
AluI AGCT 8 cut(s) 151, 522, 528, 577, 607, 628, 656, 718
Alw26I GTCTC 3 cut(s) 23, 365, 1114
AlwI GGATC 5 cut(s) 255, 492, 858, 969, 993
AlwNI CAGNNNCTG 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 989
AoxI GGCC 5 cut(s) 39, 48, 645, 670, 1004
ApeKI GCWGC 8 cut(s) 189, 390, 528, 625, 802, 814, 817, 820
ApoI RAATTY 1 cut(s) 751
AscI GGCGCGCC 1 cut(s) 759
Asp700I GAANNNNTTC 1 cut(s) 998
AspLEI GCGC 6 cut(s) 167, 189, 209, 761, 763, 784
AspS9I GGNCC 3 cut(s) 610, 696, 1004
AsuC2I CCSGG 2 cut(s) 482, 694
AsuHPI GGTGA 4 cut(s) 128, 856, 886, 904
AvaI CYCGRG 1 cut(s) 989
AvaII GGWCC 2 cut(s) 610, 696
BaeGI GKGCMC 1 cut(s) 870
BalI TGGCCA 2 cut(s) 41, 50
BanI GGYRCC 2 cut(s) 689, 796
BarI GAAGNNNNNNTAC 2 cut(s) 1010, 1042
BbrPI CACGTG 1 cut(s) 808
BbsI GAAGAC 1 cut(s) 210
BbvCI CCTCAGC 1 cut(s) 785
BbvI GCAGC 8 cut(s) 201, 377, 515, 637, 789, 801, 829, 832
BccI CCATC 6 cut(s) 95, 179, 552, 626, 833, 841
BceAI ACGGC 4 cut(s) 586, 912, 991, 1065
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 2 cut(s) 482, 694
BcoDI GTCTC 3 cut(s) 23, 365, 1114
BfmI CTRYAG 1 cut(s) 815
BfoI RGCGCY 1 cut(s) 785
BfuAI ACCTGC 2 cut(s) 33, 521
BglI GCCNNNNNGGC 1 cut(s) 47
Bme1390I CCNGG 2 cut(s) 482, 694
Bme18I GGWCC 2 cut(s) 610, 696
BmeT110I CYCGRG 1 cut(s) 989
BmgT120I GGNCC 3 cut(s) 610, 696, 1004
BmiI GGNNCC 3 cut(s) 691, 697, 798
BmrFI CCNGG 2 cut(s) 482, 694
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 2 cut(s) 404, 910
BmuI ACTGGG 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 210
BplI GAGNNNNNCTC 2 cut(s) 645, 677
BpmI CTGGAG 1 cut(s) 406
Bpu10I CCTNAGC 1 cut(s) 785
BpuEI CTTGAG 1 cut(s) 1096
BpuMI CCSGG 2 cut(s) 482, 694
BsaAI YACGTR 1 cut(s) 808
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 5 cut(s) 42, 243, 385, 642, 667
BsaWI WCCGGW 2 cut(s) 889, 1029
BsaXI ACNNNNNCTCC 8 cut(s) 47, 62, 65, 77, 92, 95, 896, 926
Bsc4I CCNNNNNNNGG 2 cut(s) 554, 1013
Bse118I RCCGGY 1 cut(s) 554
Bse1I ACTGG 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 363
BseDI CCNNGG 5 cut(s) 42, 243, 385, 642, 667
BseGI GGATG 4 cut(s) 87, 378, 544, 618
BseLI CCNNNNNNNGG 2 cut(s) 554, 1013
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 776
BseNI ACTGG 1 cut(s) 125
BsePI GCGCGC 1 cut(s) 759
BseSI GKGCMC 1 cut(s) 870
BseXI GCAGC 8 cut(s) 201, 377, 515, 637, 789, 801, 829, 832
BsgI GTGCAG 1 cut(s) 788
Bsh1236I CGCG 7 cut(s) 165, 187, 207, 387, 707, 761, 872
BshFI GGCC 5 cut(s) 41, 50, 647, 672, 1006
BshNI GGYRCC 2 cut(s) 689, 796
BsiHKCI CYCGRG 1 cut(s) 989
BsiSI CCGG 6 cut(s) 482, 555, 651, 693, 890, 1030
BslFI GGGAC 3 cut(s) 113, 515, 709
BslI CCNNNNNNNGG 2 cut(s) 554, 1013
BsmAI GTCTC 3 cut(s) 23, 365, 1114
BsmFI GGGAC 3 cut(s) 113, 515, 709
BsnI GGCC 5 cut(s) 41, 50, 647, 672, 1006
Bso31I GGTCTC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 989
Bsp1286I GDGCHC 1 cut(s) 870
Bsp1407I TGTACA 1 cut(s) 720
Bsp143I GATC 6 cut(s) 133, 247, 484, 850, 961, 985
Bsp19I CCATGG 1 cut(s) 42
BspANI GGCC 5 cut(s) 41, 50, 647, 672, 1006
BspCNI CTCAG 1 cut(s) 777
BspFNI CGCG 7 cut(s) 165, 187, 207, 387, 707, 761, 872
BspLI GGNNCC 3 cut(s) 691, 697, 798
BspMAI CTGCAG 1 cut(s) 819
BspMI ACCTGC 2 cut(s) 33, 521
BspPI GGATC 5 cut(s) 255, 492, 858, 969, 993
BspQI GCTCTTC 2 cut(s) 635, 1098
BspT107I GGYRCC 2 cut(s) 689, 796
BspTNI GGTCTC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 363
BsrFI RCCGGY 1 cut(s) 554
BsrGI TGTACA 1 cut(s) 720
BsrI ACTGG 1 cut(s) 125
BssAI RCCGGY 1 cut(s) 554
BssECI CCNNGG 5 cut(s) 42, 243, 385, 642, 667
BssHII GCGCGC 1 cut(s) 759
BssMI GATC 6 cut(s) 133, 247, 484, 850, 961, 985
BssT1I CCWWGG 2 cut(s) 42, 642
Bst4CI ACNGT 1 cut(s) 733
Bst6I CTCTTC 2 cut(s) 635, 1098
BstAUI TGTACA 1 cut(s) 720
BstBAI YACGTR 1 cut(s) 808
BstC8I GCNNGC 4 cut(s) 575, 761, 866, 870
BstDEI CTNAG 1 cut(s) 785
BstDSI CCRYGG 2 cut(s) 42, 385
BstEII GGTNACC 1 cut(s) 1025
BstF5I GGATG 4 cut(s) 87, 378, 544, 618
BstFNI CGCG 7 cut(s) 165, 187, 207, 387, 707, 761, 872
BstH2I RGCGCY 1 cut(s) 785
BstHHI GCGC 6 cut(s) 167, 189, 209, 761, 763, 784
BstKTI GATC 6 cut(s) 136, 250, 487, 853, 964, 988
BstMAI GTCTC 3 cut(s) 23, 365, 1114
BstMBI GATC 6 cut(s) 133, 247, 484, 850, 961, 985
BstPI GGTNACC 1 cut(s) 1025
BstSCI CCNGG 2 cut(s) 480, 692
BstSFI CTRYAG 1 cut(s) 815
BstSLI GKGCMC 1 cut(s) 870
BstUI CGCG 7 cut(s) 165, 187, 207, 387, 707, 761, 872
BstV1I GCAGC 8 cut(s) 201, 377, 515, 637, 789, 801, 829, 832
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 3 cut(s) 247, 850, 985
BstYI RGATCY 3 cut(s) 247, 850, 985
BsuRI GGCC 5 cut(s) 41, 50, 647, 672, 1006
BtgI CCRYGG 2 cut(s) 42, 385
BtsCI GGATG 4 cut(s) 87, 378, 544, 618
BveI ACCTGC 2 cut(s) 33, 521
Cac8I GCNNGC 4 cut(s) 575, 761, 866, 870
CaiI CAGNNNCTG 1 cut(s) 131
CfoI GCGC 6 cut(s) 167, 189, 209, 761, 763, 784
Cfr10I RCCGGY 1 cut(s) 554
Cfr13I GGNCC 3 cut(s) 610, 696, 1004
Cfr42I CCGCGG 1 cut(s) 388
Csp6I GTAC 4 cut(s) 319, 508, 721, 949
CviAII CATG 2 cut(s) 43, 322
CviQI GTAC 4 cut(s) 319, 508, 721, 949
DdeI CTNAG 1 cut(s) 785
DpnI GATC 6 cut(s) 135, 249, 486, 852, 963, 987
DpnII GATC 6 cut(s) 133, 247, 484, 850, 961, 985
DraIII CACNNNGTG 1 cut(s) 874
DrdI GACNNNNNNGTC 1 cut(s) 598
DseDI GACNNNNNNGTC 1 cut(s) 598
EaeI YGGCCR 2 cut(s) 39, 48
Eam1104I CTCTTC 2 cut(s) 635, 1098
EarI CTCTTC 2 cut(s) 635, 1098
EciI GGCGGA 1 cut(s) 653
Eco130I CCWWGG 2 cut(s) 42, 642
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 2 cut(s) 610, 696
Eco57I CTGAAG 2 cut(s) 508, 955
Eco72I CACGTG 1 cut(s) 808
Eco88I CYCGRG 1 cut(s) 989
Eco91I GGTNACC 1 cut(s) 1025
EcoO109I RGGNCCY 1 cut(s) 696
EcoO65I GGTNACC 1 cut(s) 1025
EcoT14I CCWWGG 2 cut(s) 42, 642
ErhI CCWWGG 2 cut(s) 42, 642
FaeI CATG 2 cut(s) 46, 325
FaiI YATR 7 cut(s) 44, 161, 323, 459, 499, 590, 918
FaqI GGGAC 3 cut(s) 113, 515, 709
FatI CATG 2 cut(s) 42, 321
FauI CCCGC 3 cut(s) 272, 630, 857
FbaI TGATCA 1 cut(s) 133
FokI GGATG 4 cut(s) 74, 365, 531, 605
GlaI GCGC 6 cut(s) 166, 188, 208, 760, 762, 783
GsuI CTGGAG 1 cut(s) 406
HaeII RGCGCY 1 cut(s) 785
HaeIII GGCC 5 cut(s) 41, 50, 647, 672, 1006
HapII CCGG 6 cut(s) 482, 555, 651, 693, 890, 1030
HhaI GCGC 6 cut(s) 167, 189, 209, 761, 763, 784
Hin1II CATG 2 cut(s) 46, 325
Hin6I GCGC 6 cut(s) 165, 187, 207, 759, 761, 782
HinP1I GCGC 6 cut(s) 165, 187, 207, 759, 761, 782
HinfI GANTC 3 cut(s) 356, 373, 886
HpaII CCGG 6 cut(s) 482, 555, 651, 693, 890, 1030
HphI GGTGA 4 cut(s) 128, 856, 886, 904
Hpy166II GTNNAC 2 cut(s) 510, 1081
Hpy188I TCNGA 3 cut(s) 247, 361, 604
Hpy188III TCNNGA 4 cut(s) 423, 989, 991, 1113
Hpy8I GTNNAC 2 cut(s) 510, 1081
Hpy99I CGWCG 1 cut(s) 1051
HpyAV CCTTC 4 cut(s) 241, 346, 709, 988
HpyCH4III ACNGT 1 cut(s) 733
HpyCH4IV ACGT 1 cut(s) 807
HpyCH4V TGCA 4 cut(s) 516, 805, 817, 1099
HpyF3I CTNAG 1 cut(s) 785
HpySE526I ACGT 1 cut(s) 807
Hsp92II CATG 2 cut(s) 46, 325
HspAI GCGC 6 cut(s) 165, 187, 207, 759, 761, 782
Ksp22I TGATCA 1 cut(s) 133
KspI CCGCGG 1 cut(s) 388
Kzo9I GATC 6 cut(s) 133, 247, 484, 850, 961, 985
LguI GCTCTTC 2 cut(s) 635, 1098
LmnI GCTCC 2 cut(s) 156, 653
Lsp1109I GCAGC 8 cut(s) 201, 377, 515, 637, 789, 801, 829, 832
LweI GCATC 2 cut(s) 404, 910
MaeII ACGT 1 cut(s) 807
MaeIII GTNAC 4 cut(s) 727, 736, 892, 1025
MalI GATC 6 cut(s) 135, 249, 486, 852, 963, 987
MboI GATC 6 cut(s) 133, 247, 484, 850, 961, 985
MboII GAAGA 6 cut(s) 210, 438, 622, 961, 1078, 1085
MflI RGATCY 3 cut(s) 247, 850, 985
MhlI GDGCHC 1 cut(s) 870
MlsI TGGCCA 2 cut(s) 41, 50
MluCI AATT 2 cut(s) 583, 751
MluNI TGGCCA 2 cut(s) 41, 50
MlyI GAGTC 2 cut(s) 350, 367
MmeI TCCRAC 3 cut(s) 384, 882, 939
Mox20I TGGCCA 2 cut(s) 41, 50
MroXI GAANNNNTTC 1 cut(s) 998
MscI TGGCCA 2 cut(s) 41, 50
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 746
Msp20I TGGCCA 2 cut(s) 41, 50
MspA1I CMGCKG 5 cut(s) 387, 528, 802, 814, 823
MspI CCGG 6 cut(s) 482, 555, 651, 693, 890, 1030
MspR9I CCNGG 2 cut(s) 482, 694
MvnI CGCG 7 cut(s) 165, 187, 207, 387, 707, 761, 872
NciI CCSGG 2 cut(s) 482, 694
NcoI CCATGG 1 cut(s) 42
NdeII GATC 6 cut(s) 133, 247, 484, 850, 961, 985
NlaIII CATG 2 cut(s) 46, 325
NlaIV GGNNCC 3 cut(s) 691, 697, 798
NmeAIII GCCGAG 2 cut(s) 394, 648
NmuCI GTSAC 2 cut(s) 727, 892
PaeR7I CTCGAG 1 cut(s) 989
PalAI GGCGCGCC 1 cut(s) 759
PaqCI CACCTGC 1 cut(s) 521
PauI GCGCGC 1 cut(s) 759
PciSI GCTCTTC 2 cut(s) 635, 1098
PdmI GAANNNNTTC 1 cut(s) 998
PfeI GAWTC 1 cut(s) 886
PfoI TCCNGGA 1 cut(s) 480
PleI GAGTC 2 cut(s) 350, 367
PmaCI CACGTG 1 cut(s) 808
PmlI CACGTG 1 cut(s) 808
PpsI GAGTC 2 cut(s) 350, 367
Ppu21I YACGTR 1 cut(s) 808
PpuMI RGGWCCY 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 696
PspCI CACGTG 1 cut(s) 808
PspEI GGTNACC 1 cut(s) 1025
PspN4I GGNNCC 3 cut(s) 691, 697, 798
PspPI GGNCC 3 cut(s) 610, 696, 1004
PspPPI RGGWCCY 1 cut(s) 696
PstI CTGCAG 1 cut(s) 819
PstNI CAGNNNCTG 1 cut(s) 131
PsuI RGATCY 3 cut(s) 247, 850, 985
PteI GCGCGC 1 cut(s) 759
PvuII CAGCTG 1 cut(s) 528
RsaI GTAC 4 cut(s) 320, 509, 722, 950
RsaNI GTAC 4 cut(s) 319, 508, 721, 949
RseI CAYNNNNRTG 1 cut(s) 746
SacII CCGCGG 1 cut(s) 388
SapI GCTCTTC 2 cut(s) 635, 1098
SaqAI TTAA 1 cut(s) 35
Sau3AI GATC 6 cut(s) 133, 247, 484, 850, 961, 985
Sau96I GGNCC 3 cut(s) 610, 696, 1004
SchI GAGTC 2 cut(s) 350, 367
ScrFI CCNGG 2 cut(s) 482, 694
SduI GDGCHC 1 cut(s) 870
SfaNI GCATC 2 cut(s) 404, 910
SfcI CTRYAG 1 cut(s) 815
SfiI GGCCNNNNNGGCC 1 cut(s) 47
Sfr274I CTCGAG 1 cut(s) 989
Sfr303I CCGCGG 1 cut(s) 388
SgrBI CCGCGG 1 cut(s) 388
SgsI GGCGCGCC 1 cut(s) 759
SinI GGWCC 2 cut(s) 610, 696
SlaI CTCGAG 1 cut(s) 989
SmiMI CAYNNNNRTG 1 cut(s) 746
SmlI CTYRAG 2 cut(s) 989, 1111
SmoI CTYRAG 2 cut(s) 989, 1111
Sse9I AATT 2 cut(s) 583, 751
StyD4I CCNGG 2 cut(s) 480, 692
StyI CCWWGG 2 cut(s) 42, 642
TaaI ACNGT 1 cut(s) 733
TaiI ACGT 1 cut(s) 810
TaqI TCGA 4 cut(s) 561, 675, 837, 990
TasI AATT 2 cut(s) 583, 751
TatI WGTACW 3 cut(s) 318, 507, 720
TfiI GAWTC 1 cut(s) 886
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TseFI GTSAC 2 cut(s) 727, 892
TseI GCWGC 8 cut(s) 189, 390, 528, 625, 802, 814, 817, 820
Tsp45I GTSAC 2 cut(s) 727, 892
TspDTI ATGAA 2 cut(s) 728, 764
TspGWI ACGGA 1 cut(s) 819
VpaK11BI GGWCC 2 cut(s) 610, 696
XapI RAATTY 1 cut(s) 751
XhoI CTCGAG 1 cut(s) 989
XmnI GAANNNNTTC 1 cut(s) 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.