Rmu_sc0003892.1_g000015

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003892.1
OG0014427
Physical Location & Seq
Forward (+)
75492 .. 76887
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003892.1_g000015.1.cds

Sequence Viewer

Length: 1275 bp
atgggtttcacaatgggtctgaacctgcttctcttaatggccatggtggccaccaacattctctccctctaccacctctcctccaccatccaatcccccaaacaatccccccctcccaagaacccagtccctgatcacctcctccaccagctccacaccatacgcgccaccatcaaccacctcacgcgcagccacccacccccacgcgccgcttcctcttcctcctccaccttcaaaccctcctcggatctcctcctctactcccgcctctccccaatagcctcctcctgccacaaccaccctgacctcctcaacaagtacatggactacacacccttctcgctctgccccaccgactccgacattgccgagactctcatcctccgcggctgccacccgctccctcgccgccgatgcttctccagaacgccgcagaaacccacatcttcactttctcataaccctttcgcttcttctctcccggatcaaaatgtcttatgggacaacgccgactccgacattgccgagactctcatcctccgcggctgccaccccctccctcgccgccgatgcttctccagaacgccgcagaagcccacatcttcactttctcacaaccctttcgcttcttctctcccggatcaaaatgtcttatgggacaagtacacctgcaagagcttcagctgcctcaaccgccaccaccccacctccggtttcgatttgaacggcgagctgaccaattttatgacctacaagtccgagctggacctccccatcccgcagctcttccaaatcgccaaggccgccggagctgtcctccgcctcggcctcgacatcggcggcggcaccgggaccttcgccgcgagaatgaagctgtacaatgtgacggttgttaccacaacgatgaattttggcgcgccgaacaatgaggcggtggcgctgagggggctggtgccgctgcacgtgccgctgcagcagcggtttccggtgttcgatggggtgatggatctggtgcggtgcgggcacgcggtgaataggtggattccggtgacggcgttggagtttttgttgtatgatgcggatagggtgttgaggggaggagggtacttgtggttggatcatttcttcagcaagggggtggatctcgagaaggttttcgggccgttgattgggaatttgggttaccggagagtgaagtgggcgacggcgagtaagaatgagaagaatggggaggtttacttgactgctcttctgcaaaagcctgtctcaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11 Methyltransf_29

Protein Analysis

424

Amino Acids

47.12

Weight (kDa)

9.39

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014427)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29790 AT1G29790
fragaria_vesca FvH4_3g06240 FvH4_3g06240
malus_domestica MD05G1290600.v1.1 MD16G1203100.v1.1
prunus_persica Prupe.4G075100_v2.0.a1
pyrus_communis pycom10g22250
rosa_chinensis RchiOBHm_Chr5g0013071
rosa_laevigata RLG00000031983
rosa_multiflora Rmu_sc0003892.1_g000015
rosa_rugosa Rorug05G0007000
rosa_samantha Rh5AG101000 Rh5BG097600 Rh5CG109700 Rh5DG096600
rosa_wichuraiana Rw5G008830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 677
AasI GACNNNNNNGTC 1 cut(s) 754
Acc36I ACCTGC 2 cut(s) 33, 677
AccB1I GGYRCC 2 cut(s) 845, 952
AccBSI CCGCTC 1 cut(s) 400
AccII CGCG 8 cut(s) 165, 187, 207, 387, 543, 863, 917, 1028
AclWI GGATC 6 cut(s) 255, 492, 648, 1014, 1125, 1149
AcoI YGGCCR 2 cut(s) 39, 48
AcsI RAATTY 2 cut(s) 907, 1174
AcuI CTGAAG 2 cut(s) 664, 1111
AcvI CACGTG 1 cut(s) 964
AdeI CACNNNGTG 1 cut(s) 1030
AfaI GTAC 4 cut(s) 320, 665, 878, 1106
AfiI CCNNNNNNNGG 2 cut(s) 710, 1169
AgsI TTSAA 2 cut(s) 235, 724
AluBI AGCT 8 cut(s) 151, 678, 684, 733, 763, 784, 812, 874
AluI AGCT 8 cut(s) 151, 678, 684, 733, 763, 784, 812, 874
Alw26I GTCTC 3 cut(s) 365, 521, 1270
AlwI GGATC 6 cut(s) 255, 492, 648, 1014, 1125, 1149
AlwNI CAGNNNCTG 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 1145
AoxI GGCC 5 cut(s) 39, 48, 801, 826, 1160
ApeKI GCWGC 9 cut(s) 189, 390, 546, 684, 781, 958, 970, 973, 976
ApoI RAATTY 2 cut(s) 907, 1174
AscI GGCGCGCC 1 cut(s) 915
Asp700I GAANNNNTTC 1 cut(s) 1154
AspLEI GCGC 6 cut(s) 167, 189, 209, 917, 919, 940
AspS9I GGNCC 3 cut(s) 766, 852, 1160
AsuC2I CCSGG 3 cut(s) 482, 638, 850
AsuHPI GGTGA 4 cut(s) 128, 1012, 1042, 1060
AvaI CYCGRG 1 cut(s) 1145
AvaII GGWCC 2 cut(s) 766, 852
BaeGI GKGCMC 1 cut(s) 1026
BalI TGGCCA 2 cut(s) 41, 50
BanI GGYRCC 2 cut(s) 845, 952
BbrPI CACGTG 1 cut(s) 964
BbvCI CCTCAGC 1 cut(s) 941
BbvI GCAGC 9 cut(s) 201, 377, 533, 671, 793, 945, 957, 985, 988
BccI CCATC 5 cut(s) 95, 179, 782, 989, 997
BceAI ACGGC 4 cut(s) 742, 1068, 1147, 1221
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 3 cut(s) 482, 638, 850
BcoDI GTCTC 3 cut(s) 365, 521, 1270
BfmI CTRYAG 1 cut(s) 971
BfoI RGCGCY 1 cut(s) 941
BfuAI ACCTGC 2 cut(s) 33, 677
BglI GCCNNNNNGGC 1 cut(s) 47
Bme1390I CCNGG 3 cut(s) 482, 638, 850
Bme18I GGWCC 2 cut(s) 766, 852
BmeT110I CYCGRG 1 cut(s) 1145
BmgT120I GGNCC 3 cut(s) 766, 852, 1160
BmiI GGNNCC 3 cut(s) 847, 853, 954
BmrFI CCNGG 3 cut(s) 482, 638, 850
BmrI ACTGGG 1 cut(s) 119
BmsI GCATC 3 cut(s) 404, 560, 1066
BmuI ACTGGG 1 cut(s) 119
BplI GAGNNNNNCTC 2 cut(s) 801, 833
BpmI CTGGAG 2 cut(s) 406, 562
Bpu10I CCTNAGC 1 cut(s) 941
BpuEI CTTGAG 1 cut(s) 1252
BpuMI CCSGG 3 cut(s) 482, 638, 850
BsaAI YACGTR 1 cut(s) 964
BsaJI CCNNGG 6 cut(s) 42, 243, 385, 541, 798, 823
BsaWI WCCGGW 4 cut(s) 710, 985, 1045, 1185
Bsc4I CCNNNNNNNGG 2 cut(s) 710, 1169
Bse1I ACTGG 1 cut(s) 125
Bse3DI GCAATG 2 cut(s) 363, 519
BseDI CCNNGG 6 cut(s) 42, 243, 385, 541, 798, 823
BseGI GGATG 4 cut(s) 87, 378, 534, 774
BseLI CCNNNNNNNGG 2 cut(s) 710, 1169
BseMI GCAATG 2 cut(s) 363, 519
BseMII CTCAG 1 cut(s) 932
BseNI ACTGG 1 cut(s) 125
BsePI GCGCGC 1 cut(s) 915
BseRI GAGGAG 9 cut(s) 70, 131, 214, 232, 242, 245, 274, 299, 1113
BseSI GKGCMC 1 cut(s) 1026
BseXI GCAGC 9 cut(s) 201, 377, 533, 671, 793, 945, 957, 985, 988
BsgI GTGCAG 1 cut(s) 944
Bsh1236I CGCG 8 cut(s) 165, 187, 207, 387, 543, 863, 917, 1028
BshFI GGCC 5 cut(s) 41, 50, 803, 828, 1162
BshNI GGYRCC 2 cut(s) 845, 952
BsiHKCI CYCGRG 1 cut(s) 1145
BsiSI CCGG 8 cut(s) 482, 638, 711, 807, 849, 986, 1046, 1186
BslFI GGGAC 4 cut(s) 113, 515, 671, 865
BslI CCNNNNNNNGG 2 cut(s) 710, 1169
BsmAI GTCTC 3 cut(s) 365, 521, 1270
BsmFI GGGAC 4 cut(s) 113, 515, 671, 865
BsnI GGCC 5 cut(s) 41, 50, 803, 828, 1162
BsoBI CYCGRG 1 cut(s) 1145
Bsp1286I GDGCHC 1 cut(s) 1026
Bsp1407I TGTACA 1 cut(s) 876
Bsp143I GATC 7 cut(s) 133, 247, 484, 640, 1006, 1117, 1141
Bsp19I CCATGG 1 cut(s) 42
BspANI GGCC 5 cut(s) 41, 50, 803, 828, 1162
BspCNI CTCAG 1 cut(s) 933
BspFNI CGCG 8 cut(s) 165, 187, 207, 387, 543, 863, 917, 1028
BspLI GGNNCC 3 cut(s) 847, 853, 954
BspMAI CTGCAG 1 cut(s) 975
BspMI ACCTGC 2 cut(s) 33, 677
BspPI GGATC 6 cut(s) 255, 492, 648, 1014, 1125, 1149
BspQI GCTCTTC 2 cut(s) 791, 1254
BspT107I GGYRCC 2 cut(s) 845, 952
BsrBI CCGCTC 1 cut(s) 400
BsrDI GCAATG 2 cut(s) 363, 519
BsrGI TGTACA 1 cut(s) 876
BsrI ACTGG 1 cut(s) 125
BssECI CCNNGG 6 cut(s) 42, 243, 385, 541, 798, 823
BssHII GCGCGC 1 cut(s) 915
BssMI GATC 7 cut(s) 133, 247, 484, 640, 1006, 1117, 1141
BssT1I CCWWGG 2 cut(s) 42, 798
Bst4CI ACNGT 1 cut(s) 889
Bst6I CTCTTC 3 cut(s) 223, 791, 1254
BstAUI TGTACA 1 cut(s) 876
BstBAI YACGTR 1 cut(s) 964
BstC8I GCNNGC 4 cut(s) 731, 917, 1022, 1026
BstDEI CTNAG 1 cut(s) 941
BstDSI CCRYGG 3 cut(s) 42, 385, 541
BstEII GGTNACC 1 cut(s) 1181
BstF5I GGATG 4 cut(s) 87, 378, 534, 774
BstFNI CGCG 8 cut(s) 165, 187, 207, 387, 543, 863, 917, 1028
BstH2I RGCGCY 1 cut(s) 941
BstHHI GCGC 6 cut(s) 167, 189, 209, 917, 919, 940
BstKTI GATC 7 cut(s) 136, 250, 487, 643, 1009, 1120, 1144
BstMAI GTCTC 3 cut(s) 365, 521, 1270
BstMBI GATC 7 cut(s) 133, 247, 484, 640, 1006, 1117, 1141
BstPI GGTNACC 1 cut(s) 1181
BstSCI CCNGG 3 cut(s) 480, 636, 848
BstSFI CTRYAG 1 cut(s) 971
BstSLI GKGCMC 1 cut(s) 1026
BstUI CGCG 8 cut(s) 165, 187, 207, 387, 543, 863, 917, 1028
BstV1I GCAGC 9 cut(s) 201, 377, 533, 671, 793, 945, 957, 985, 988
BstX2I RGATCY 3 cut(s) 247, 1006, 1141
BstYI RGATCY 3 cut(s) 247, 1006, 1141
BsuRI GGCC 5 cut(s) 41, 50, 803, 828, 1162
BtgI CCRYGG 3 cut(s) 42, 385, 541
BtsCI GGATG 4 cut(s) 87, 378, 534, 774
BveI ACCTGC 2 cut(s) 33, 677
Cac8I GCNNGC 4 cut(s) 731, 917, 1022, 1026
CaiI CAGNNNCTG 1 cut(s) 131
CfoI GCGC 6 cut(s) 167, 189, 209, 917, 919, 940
Cfr13I GGNCC 3 cut(s) 766, 852, 1160
Cfr42I CCGCGG 2 cut(s) 388, 544
Csp6I GTAC 4 cut(s) 319, 664, 877, 1105
CviAII CATG 2 cut(s) 43, 322
CviQI GTAC 4 cut(s) 319, 664, 877, 1105
DdeI CTNAG 1 cut(s) 941
DpnI GATC 7 cut(s) 135, 249, 486, 642, 1008, 1119, 1143
DpnII GATC 7 cut(s) 133, 247, 484, 640, 1006, 1117, 1141
DraIII CACNNNGTG 1 cut(s) 1030
DrdI GACNNNNNNGTC 1 cut(s) 754
DseDI GACNNNNNNGTC 1 cut(s) 754
EaeI YGGCCR 2 cut(s) 39, 48
Eam1104I CTCTTC 3 cut(s) 223, 791, 1254
EarI CTCTTC 3 cut(s) 223, 791, 1254
EciI GGCGGA 1 cut(s) 809
Eco130I CCWWGG 2 cut(s) 42, 798
Eco47I GGWCC 2 cut(s) 766, 852
Eco57I CTGAAG 2 cut(s) 664, 1111
Eco72I CACGTG 1 cut(s) 964
Eco88I CYCGRG 1 cut(s) 1145
Eco91I GGTNACC 1 cut(s) 1181
EcoO109I RGGNCCY 1 cut(s) 852
EcoO65I GGTNACC 1 cut(s) 1181
EcoT14I CCWWGG 2 cut(s) 42, 798
ErhI CCWWGG 2 cut(s) 42, 798
FaeI CATG 2 cut(s) 46, 325
FaiI YATR 8 cut(s) 44, 161, 323, 459, 499, 655, 746, 1074
FaqI GGGAC 4 cut(s) 113, 515, 671, 865
FatI CATG 2 cut(s) 42, 321
FauI CCCGC 4 cut(s) 272, 405, 786, 1013
FbaI TGATCA 1 cut(s) 133
FokI GGATG 4 cut(s) 74, 365, 521, 761
GlaI GCGC 6 cut(s) 166, 188, 208, 916, 918, 939
GsuI CTGGAG 2 cut(s) 406, 562
HaeII RGCGCY 1 cut(s) 941
HaeIII GGCC 5 cut(s) 41, 50, 803, 828, 1162
HapII CCGG 8 cut(s) 482, 638, 711, 807, 849, 986, 1046, 1186
HhaI GCGC 6 cut(s) 167, 189, 209, 917, 919, 940
Hin1II CATG 2 cut(s) 46, 325
Hin6I GCGC 6 cut(s) 165, 187, 207, 915, 917, 938
HinP1I GCGC 6 cut(s) 165, 187, 207, 915, 917, 938
HinfI GANTC 5 cut(s) 356, 373, 512, 529, 1042
HpaII CCGG 8 cut(s) 482, 638, 711, 807, 849, 986, 1046, 1186
HphI GGTGA 4 cut(s) 128, 1012, 1042, 1060
Hpy166II GTNNAC 2 cut(s) 666, 1237
Hpy188I TCNGA 5 cut(s) 21, 247, 361, 517, 760
Hpy188III TCNNGA 5 cut(s) 423, 579, 1145, 1147, 1269
Hpy8I GTNNAC 2 cut(s) 666, 1237
Hpy99I CGWCG 1 cut(s) 1207
HpyAV CCTTC 4 cut(s) 241, 346, 865, 1144
HpyCH4III ACNGT 1 cut(s) 889
HpyCH4IV ACGT 1 cut(s) 963
HpyCH4V TGCA 4 cut(s) 672, 961, 973, 1255
HpyF3I CTNAG 1 cut(s) 941
HpySE526I ACGT 1 cut(s) 963
Hsp92II CATG 2 cut(s) 46, 325
HspAI GCGC 6 cut(s) 165, 187, 207, 915, 917, 938
Ksp22I TGATCA 1 cut(s) 133
KspI CCGCGG 2 cut(s) 388, 544
Kzo9I GATC 7 cut(s) 133, 247, 484, 640, 1006, 1117, 1141
LguI GCTCTTC 2 cut(s) 791, 1254
LmnI GCTCC 3 cut(s) 156, 405, 809
Lsp1109I GCAGC 9 cut(s) 201, 377, 533, 671, 793, 945, 957, 985, 988
LweI GCATC 3 cut(s) 404, 560, 1066
MaeII ACGT 1 cut(s) 963
MaeIII GTNAC 4 cut(s) 883, 892, 1048, 1181
MalI GATC 7 cut(s) 135, 249, 486, 642, 1008, 1119, 1143
MbiI CCGCTC 1 cut(s) 400
MboI GATC 7 cut(s) 133, 247, 484, 640, 1006, 1117, 1141
MboII GAAGA 9 cut(s) 210, 438, 465, 594, 621, 778, 1117, 1234, 1241
MflI RGATCY 3 cut(s) 247, 1006, 1141
MhlI GDGCHC 1 cut(s) 1026
MlsI TGGCCA 2 cut(s) 41, 50
MluCI AATT 3 cut(s) 739, 907, 1174
MluNI TGGCCA 2 cut(s) 41, 50
MlyI GAGTC 4 cut(s) 350, 367, 506, 523
MmeI TCCRAC 4 cut(s) 384, 540, 1038, 1095
Mox20I TGGCCA 2 cut(s) 41, 50
MroXI GAANNNNTTC 1 cut(s) 1154
MscI TGGCCA 2 cut(s) 41, 50
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 902
Msp20I TGGCCA 2 cut(s) 41, 50
MspA1I CMGCKG 6 cut(s) 387, 543, 684, 958, 970, 979
MspI CCGG 8 cut(s) 482, 638, 711, 807, 849, 986, 1046, 1186
MspR9I CCNGG 3 cut(s) 482, 638, 850
MvnI CGCG 8 cut(s) 165, 187, 207, 387, 543, 863, 917, 1028
NciI CCSGG 3 cut(s) 482, 638, 850
NcoI CCATGG 1 cut(s) 42
NdeII GATC 7 cut(s) 133, 247, 484, 640, 1006, 1117, 1141
NlaIII CATG 2 cut(s) 46, 325
NlaIV GGNNCC 3 cut(s) 847, 853, 954
NmeAIII GCCGAG 3 cut(s) 394, 550, 804
NmuCI GTSAC 2 cut(s) 883, 1048
PaeR7I CTCGAG 1 cut(s) 1145
PalAI GGCGCGCC 1 cut(s) 915
PaqCI CACCTGC 1 cut(s) 677
PauI GCGCGC 1 cut(s) 915
PciSI GCTCTTC 2 cut(s) 791, 1254
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PdmI GAANNNNTTC 1 cut(s) 1154
PfeI GAWTC 1 cut(s) 1042
PfoI TCCNGGA 2 cut(s) 480, 636
PleI GAGTC 4 cut(s) 350, 367, 506, 523
PmaCI CACGTG 1 cut(s) 964
PmlI CACGTG 1 cut(s) 964
PpsI GAGTC 4 cut(s) 350, 367, 506, 523
Ppu21I YACGTR 1 cut(s) 964
PpuMI RGGWCCY 1 cut(s) 852
Psp5II RGGWCCY 1 cut(s) 852
PspCI CACGTG 1 cut(s) 964
PspEI GGTNACC 1 cut(s) 1181
PspN4I GGNNCC 3 cut(s) 847, 853, 954
PspPI GGNCC 3 cut(s) 766, 852, 1160
PspPPI RGGWCCY 1 cut(s) 852
PstI CTGCAG 1 cut(s) 975
PstNI CAGNNNCTG 1 cut(s) 131
PsuI RGATCY 3 cut(s) 247, 1006, 1141
PteI GCGCGC 1 cut(s) 915
PvuII CAGCTG 1 cut(s) 684
RsaI GTAC 4 cut(s) 320, 665, 878, 1106
RsaNI GTAC 4 cut(s) 319, 664, 877, 1105
RseI CAYNNNNRTG 1 cut(s) 902
SacII CCGCGG 2 cut(s) 388, 544
SapI GCTCTTC 2 cut(s) 791, 1254
SaqAI TTAA 1 cut(s) 35
Sau3AI GATC 7 cut(s) 133, 247, 484, 640, 1006, 1117, 1141
Sau96I GGNCC 3 cut(s) 766, 852, 1160
SchI GAGTC 4 cut(s) 350, 367, 506, 523
ScrFI CCNGG 3 cut(s) 482, 638, 850
SduI GDGCHC 1 cut(s) 1026
SfaNI GCATC 3 cut(s) 404, 560, 1066
SfcI CTRYAG 1 cut(s) 971
SfiI GGCCNNNNNGGCC 1 cut(s) 47
Sfr274I CTCGAG 1 cut(s) 1145
Sfr303I CCGCGG 2 cut(s) 388, 544
SgrBI CCGCGG 2 cut(s) 388, 544
SgsI GGCGCGCC 1 cut(s) 915
SinI GGWCC 2 cut(s) 766, 852
SlaI CTCGAG 1 cut(s) 1145
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 2 cut(s) 1145, 1267
SmoI CTYRAG 2 cut(s) 1145, 1267
Sse9I AATT 3 cut(s) 739, 907, 1174
StyD4I CCNGG 3 cut(s) 480, 636, 848
StyI CCWWGG 2 cut(s) 42, 798
TaaI ACNGT 1 cut(s) 889
TaiI ACGT 1 cut(s) 966
TaqI TCGA 4 cut(s) 717, 831, 993, 1146
TasI AATT 3 cut(s) 739, 907, 1174
TatI WGTACW 3 cut(s) 318, 663, 876
TfiI GAWTC 1 cut(s) 1042
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TseFI GTSAC 2 cut(s) 883, 1048
TseI GCWGC 9 cut(s) 189, 390, 546, 684, 781, 958, 970, 973, 976
Tsp45I GTSAC 2 cut(s) 883, 1048
TspDTI ATGAA 2 cut(s) 884, 920
VpaK11BI GGWCC 2 cut(s) 766, 852
XapI RAATTY 2 cut(s) 907, 1174
XhoI CTCGAG 1 cut(s) 1145
XmnI GAANNNNTTC 1 cut(s) 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.