RLG00000031983

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014427
Physical Location & Seq
Reverse (-)
10005138 .. 10006244
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031983

Sequence Viewer

Length: 1107 bp
ATGGGTCTGAACCTGCTTCTCTTAATGGCCATGGTGGCCACCAACATTCTCTCCCTCTACCACCTCTCCTCCACCATCCAATCCCCCAAACAATCCCCTCCTCCCAAAAACCCAGTCCCTGATCACCTCCTCCACCAGCTCCACACCATACGCGCCACCATCAACCACCTCACGCGCAGCCACCCACCTCCACGCGCCGCTTCCTCCTCAACCTCCACCTTCAAACCCTCCTCGGATCTCCTCCTCTACTCCCGCCTCTCCCCAATAGCCTCCTCCTGCCACAACCACCCTGACCTCCTCAACAAGTACATGGACTACACACCCTTCTCGCTCTGCCCCACCGACTCCGACATTGCCGAGACTCTTATCCTCCACGGCTGCCACCCTCTCCCTCGCCGCCGATGCTTCTCCAGAACGCCGCAGAAGCCCACATCTTCACTTTCTCATAACCCTTTCCCTTCTTCTCTCCCGGATCAAAATGTCTTATGGGACAAGTACACCTGCAAGAGCTTCAGCTGCCTCAACCGCCACCATCCCACCTCCGGTTTCGATTTGAACGGCGAGCTGACCAATTTTATGACCTACAAGTCCGAGCTGGACCTCCCCATCCCGCAGCTCTTCCAAATCGCCAAGGCCGCCGGAGCTGTCCTCCGCCTCGGCCTCGACATCGGCGGCGGCACCGGGACATTTGCCGCCAGGATGAAGCTCTACAATGTGACAGTTGTTACCACAACGATGAATTTTGGCGCGCCGAACAATGAGGCGGTGGCGCTGAGGGGGCTGGTGCCGCTGCACGTGCCCCTGCAGCAGCGGTTTCCGGTGTTCGATGGGGTGATGGATCTGGTGCGGTGCGGGCACGCGGTGAATAGGTGGATTCCGGTGACGGCGTTGGAGTTTTTGTTGTATGATGCGGATAGGGTGTTGAGGGGAGGAGGGTACTTGTGGTTGGATCATTTCTTCAGCAAGGGGGTGGATCTCGAGAAGGTTTTCGGGCCGTTGATCGGGAAGTTGGGGTACCGGAGGGTGAAGTGGGCGACGGCGAGTAAGAATGAGAAGAATGGGGAGGTTTACTTGACTGCTCTTCTGCAAAAGCCTGTCTCAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11 Methyltransf_29

Protein Analysis

369

Amino Acids

40.89

Weight (kDa)

9.42

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014427)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29790 AT1G29790
fragaria_vesca FvH4_3g06240 FvH4_3g06240
malus_domestica MD05G1290600.v1.1 MD16G1203100.v1.1
prunus_persica Prupe.4G075100_v2.0.a1
pyrus_communis pycom10g22250
rosa_chinensis RchiOBHm_Chr5g0013071
rosa_laevigata RLG00000031983
rosa_multiflora Rmu_sc0003892.1_g000015
rosa_rugosa Rorug05G0007000
rosa_samantha Rh5AG101000 Rh5BG097600 Rh5CG109700 Rh5DG096600
rosa_wichuraiana Rw5G008830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 509
AasI GACNNNNNNGTC 1 cut(s) 586
Acc36I ACCTGC 2 cut(s) 21, 509
Acc65I GGTACC 1 cut(s) 1014
AccB1I GGYRCC 3 cut(s) 677, 784, 1014
AccII CGCG 5 cut(s) 153, 175, 195, 749, 860
AclWI GGATC 5 cut(s) 243, 480, 846, 957, 981
AcoI YGGCCR 2 cut(s) 27, 36
AcsI RAATTY 1 cut(s) 739
AcuI CTGAAG 2 cut(s) 496, 943
AcvI CACGTG 1 cut(s) 796
AdeI CACNNNGTG 1 cut(s) 862
AfaI GTAC 4 cut(s) 308, 497, 938, 1016
AfiI CCNNNNNNNGG 2 cut(s) 542, 1001
AgsI TTSAA 2 cut(s) 223, 556
AjnI CCWGG 1 cut(s) 695
AluBI AGCT 8 cut(s) 139, 510, 516, 565, 595, 616, 644, 706
AluI AGCT 8 cut(s) 139, 510, 516, 565, 595, 616, 644, 706
Alw26I GTCTC 2 cut(s) 353, 1102
AlwI GGATC 5 cut(s) 243, 480, 846, 957, 981
AlwNI CAGNNNCTG 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 977
AoxI GGCC 5 cut(s) 27, 36, 633, 658, 992
ApeKI GCWGC 7 cut(s) 177, 378, 516, 613, 790, 805, 808
ApoI RAATTY 1 cut(s) 739
ArsI GACNNNNNNTTYG 2 cut(s) 99, 131
AscI GGCGCGCC 1 cut(s) 747
Asp700I GAANNNNTTC 1 cut(s) 986
Asp718I GGTACC 1 cut(s) 1014
AspLEI GCGC 6 cut(s) 155, 177, 197, 749, 751, 772
AspS9I GGNCC 2 cut(s) 598, 992
AsuC2I CCSGG 2 cut(s) 470, 682
AsuHPI GGTGA 5 cut(s) 116, 844, 874, 892, 1036
AvaI CYCGRG 1 cut(s) 977
AvaII GGWCC 1 cut(s) 598
BaeGI GKGCMC 2 cut(s) 801, 858
BalI TGGCCA 2 cut(s) 29, 38
BanI GGYRCC 3 cut(s) 677, 784, 1014
BarI GAAGNNNNNNTAC 2 cut(s) 998, 1030
BbrPI CACGTG 1 cut(s) 796
BbvCI CCTCAGC 1 cut(s) 773
BbvI GCAGC 7 cut(s) 189, 365, 503, 625, 777, 817, 820
BccI CCATC 6 cut(s) 83, 167, 540, 614, 821, 829
BceAI ACGGC 5 cut(s) 391, 574, 900, 979, 1053
BciT130I CCWGG 1 cut(s) 697
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 2 cut(s) 470, 682
BcoDI GTCTC 2 cut(s) 353, 1102
BfmI CTRYAG 1 cut(s) 803
BfoI RGCGCY 1 cut(s) 773
BfuAI ACCTGC 2 cut(s) 21, 509
BglI GCCNNNNNGGC 1 cut(s) 35
Bme1390I CCNGG 3 cut(s) 470, 682, 697
Bme18I GGWCC 1 cut(s) 598
BmeT110I CYCGRG 1 cut(s) 977
BmgT120I GGNCC 2 cut(s) 598, 992
BmiI GGNNCC 3 cut(s) 679, 786, 1016
BmrFI CCNGG 3 cut(s) 470, 682, 697
BmrI ACTGGG 1 cut(s) 107
BmsI GCATC 2 cut(s) 392, 898
BmuI ACTGGG 1 cut(s) 107
BplI GAGNNNNNCTC 2 cut(s) 633, 665
BpmI CTGGAG 1 cut(s) 394
Bpu10I CCTNAGC 1 cut(s) 773
BpuEI CTTGAG 1 cut(s) 1084
BpuMI CCSGG 2 cut(s) 470, 682
BsaAI YACGTR 1 cut(s) 796
BsaJI CCNNGG 5 cut(s) 30, 231, 373, 630, 655
BsaWI WCCGGW 4 cut(s) 542, 817, 877, 1017
BsaXI ACNNNNNCTCC 8 cut(s) 35, 50, 53, 65, 80, 83, 884, 914
Bsc4I CCNNNNNNNGG 2 cut(s) 542, 1001
Bse1I ACTGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 697
BseDI CCNNGG 5 cut(s) 30, 231, 373, 630, 655
BseGI GGATG 4 cut(s) 75, 532, 606, 705
BseLI CCNNNNNNNGG 2 cut(s) 542, 1001
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 764
BseNI ACTGG 1 cut(s) 113
BsePI GCGCGC 1 cut(s) 747
BseSI GKGCMC 2 cut(s) 801, 858
BseXI GCAGC 7 cut(s) 189, 365, 503, 625, 777, 817, 820
BsgI GTGCAG 1 cut(s) 776
Bsh1236I CGCG 5 cut(s) 153, 175, 195, 749, 860
BshFI GGCC 5 cut(s) 29, 38, 635, 660, 994
BshNI GGYRCC 3 cut(s) 677, 784, 1014
BsiHKCI CYCGRG 1 cut(s) 977
BsiSI CCGG 7 cut(s) 470, 543, 639, 681, 818, 878, 1018
BslFI GGGAC 3 cut(s) 101, 503, 697
BslI CCNNNNNNNGG 2 cut(s) 542, 1001
BsmAI GTCTC 2 cut(s) 353, 1102
BsmFI GGGAC 3 cut(s) 101, 503, 697
BsnI GGCC 5 cut(s) 29, 38, 635, 660, 994
BsoBI CYCGRG 1 cut(s) 977
Bsp1286I GDGCHC 2 cut(s) 801, 858
Bsp143I GATC 7 cut(s) 121, 235, 472, 838, 949, 973, 999
Bsp19I CCATGG 1 cut(s) 30
BspANI GGCC 5 cut(s) 29, 38, 635, 660, 994
BspCNI CTCAG 1 cut(s) 765
BspFNI CGCG 5 cut(s) 153, 175, 195, 749, 860
BspLI GGNNCC 3 cut(s) 679, 786, 1016
BspMAI CTGCAG 1 cut(s) 807
BspMI ACCTGC 2 cut(s) 21, 509
BspPI GGATC 5 cut(s) 243, 480, 846, 957, 981
BspQI GCTCTTC 2 cut(s) 623, 1086
BspT107I GGYRCC 3 cut(s) 677, 784, 1014
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 5 cut(s) 30, 231, 373, 630, 655
BssHII GCGCGC 1 cut(s) 747
BssMI GATC 7 cut(s) 121, 235, 472, 838, 949, 973, 999
BssT1I CCWWGG 2 cut(s) 30, 630
Bst2UI CCWGG 1 cut(s) 697
Bst4CI ACNGT 1 cut(s) 721
Bst6I CTCTTC 2 cut(s) 623, 1086
BstBAI YACGTR 1 cut(s) 796
BstC8I GCNNGC 4 cut(s) 563, 749, 854, 858
BstDEI CTNAG 1 cut(s) 773
BstDSI CCRYGG 2 cut(s) 30, 373
BstF5I GGATG 4 cut(s) 75, 532, 606, 705
BstFNI CGCG 5 cut(s) 153, 175, 195, 749, 860
BstH2I RGCGCY 1 cut(s) 773
BstHHI GCGC 6 cut(s) 155, 177, 197, 749, 751, 772
BstKTI GATC 7 cut(s) 124, 238, 475, 841, 952, 976, 1002
BstMAI GTCTC 2 cut(s) 353, 1102
BstMBI GATC 7 cut(s) 121, 235, 472, 838, 949, 973, 999
BstNI CCWGG 1 cut(s) 697
BstSCI CCNGG 3 cut(s) 468, 680, 695
BstSFI CTRYAG 1 cut(s) 803
BstSLI GKGCMC 2 cut(s) 801, 858
BstUI CGCG 5 cut(s) 153, 175, 195, 749, 860
BstV1I GCAGC 7 cut(s) 189, 365, 503, 625, 777, 817, 820
BstX2I RGATCY 3 cut(s) 235, 838, 973
BstYI RGATCY 3 cut(s) 235, 838, 973
BsuRI GGCC 5 cut(s) 29, 38, 635, 660, 994
BtgI CCRYGG 2 cut(s) 30, 373
BtsCI GGATG 4 cut(s) 75, 532, 606, 705
BveI ACCTGC 2 cut(s) 21, 509
Cac8I GCNNGC 4 cut(s) 563, 749, 854, 858
CaiI CAGNNNCTG 1 cut(s) 119
CfoI GCGC 6 cut(s) 155, 177, 197, 749, 751, 772
Cfr13I GGNCC 2 cut(s) 598, 992
Csp6I GTAC 4 cut(s) 307, 496, 937, 1015
CviAII CATG 2 cut(s) 31, 310
CviQI GTAC 4 cut(s) 307, 496, 937, 1015
DdeI CTNAG 1 cut(s) 773
DpnI GATC 7 cut(s) 123, 237, 474, 840, 951, 975, 1001
DpnII GATC 7 cut(s) 121, 235, 472, 838, 949, 973, 999
DraIII CACNNNGTG 1 cut(s) 862
DrdI GACNNNNNNGTC 1 cut(s) 586
DseDI GACNNNNNNGTC 1 cut(s) 586
EaeI YGGCCR 2 cut(s) 27, 36
Eam1104I CTCTTC 2 cut(s) 623, 1086
EarI CTCTTC 2 cut(s) 623, 1086
EciI GGCGGA 1 cut(s) 641
Eco130I CCWWGG 2 cut(s) 30, 630
Eco47I GGWCC 1 cut(s) 598
Eco57I CTGAAG 2 cut(s) 496, 943
Eco72I CACGTG 1 cut(s) 796
Eco88I CYCGRG 1 cut(s) 977
EcoRII CCWGG 1 cut(s) 695
EcoT14I CCWWGG 2 cut(s) 30, 630
ErhI CCWWGG 2 cut(s) 30, 630
FaeI CATG 2 cut(s) 34, 313
FaiI YATR 7 cut(s) 32, 149, 311, 447, 487, 578, 906
FaqI GGGAC 3 cut(s) 101, 503, 697
FatI CATG 2 cut(s) 30, 309
FauI CCCGC 3 cut(s) 260, 618, 845
FbaI TGATCA 1 cut(s) 121
FokI GGATG 4 cut(s) 62, 519, 593, 712
GlaI GCGC 6 cut(s) 154, 176, 196, 748, 750, 771
GsuI CTGGAG 1 cut(s) 394
HaeII RGCGCY 1 cut(s) 773
HaeIII GGCC 5 cut(s) 29, 38, 635, 660, 994
HapII CCGG 7 cut(s) 470, 543, 639, 681, 818, 878, 1018
HhaI GCGC 6 cut(s) 155, 177, 197, 749, 751, 772
Hin1II CATG 2 cut(s) 34, 313
Hin6I GCGC 6 cut(s) 153, 175, 195, 747, 749, 770
HinP1I GCGC 6 cut(s) 153, 175, 195, 747, 749, 770
HinfI GANTC 3 cut(s) 344, 361, 874
HpaII CCGG 7 cut(s) 470, 543, 639, 681, 818, 878, 1018
HphI GGTGA 5 cut(s) 116, 844, 874, 892, 1036
Hpy166II GTNNAC 2 cut(s) 498, 1069
Hpy188I TCNGA 4 cut(s) 9, 235, 349, 592
Hpy188III TCNNGA 5 cut(s) 411, 977, 979, 1003, 1101
Hpy8I GTNNAC 2 cut(s) 498, 1069
Hpy99I CGWCG 1 cut(s) 1039
HpyAV CCTTC 4 cut(s) 229, 334, 468, 976
HpyCH4III ACNGT 1 cut(s) 721
HpyCH4IV ACGT 1 cut(s) 795
HpyCH4V TGCA 4 cut(s) 504, 793, 805, 1087
HpyF3I CTNAG 1 cut(s) 773
HpySE526I ACGT 1 cut(s) 795
Hsp92II CATG 2 cut(s) 34, 313
HspAI GCGC 6 cut(s) 153, 175, 195, 747, 749, 770
KpnI GGTACC 1 cut(s) 1018
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 7 cut(s) 121, 235, 472, 838, 949, 973, 999
LguI GCTCTTC 2 cut(s) 623, 1086
LmnI GCTCC 2 cut(s) 144, 641
Lsp1109I GCAGC 7 cut(s) 189, 365, 503, 625, 777, 817, 820
LweI GCATC 2 cut(s) 392, 898
MaeII ACGT 1 cut(s) 795
MaeIII GTNAC 3 cut(s) 715, 724, 880
MalI GATC 7 cut(s) 123, 237, 474, 840, 951, 975, 1001
MboI GATC 7 cut(s) 121, 235, 472, 838, 949, 973, 999
MboII GAAGA 6 cut(s) 426, 453, 610, 949, 1066, 1073
MflI RGATCY 3 cut(s) 235, 838, 973
MhlI GDGCHC 2 cut(s) 801, 858
MlsI TGGCCA 2 cut(s) 29, 38
MluCI AATT 2 cut(s) 571, 739
MluNI TGGCCA 2 cut(s) 29, 38
MlyI GAGTC 2 cut(s) 338, 355
MmeI TCCRAC 3 cut(s) 372, 870, 927
Mox20I TGGCCA 2 cut(s) 29, 38
MroXI GAANNNNTTC 1 cut(s) 986
MscI TGGCCA 2 cut(s) 29, 38
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 734
Msp20I TGGCCA 2 cut(s) 29, 38
MspA1I CMGCKG 3 cut(s) 516, 790, 811
MspI CCGG 7 cut(s) 470, 543, 639, 681, 818, 878, 1018
MspR9I CCNGG 3 cut(s) 470, 682, 697
MvaI CCWGG 1 cut(s) 697
MvnI CGCG 5 cut(s) 153, 175, 195, 749, 860
NciI CCSGG 2 cut(s) 470, 682
NcoI CCATGG 1 cut(s) 30
NdeII GATC 7 cut(s) 121, 235, 472, 838, 949, 973, 999
NlaIII CATG 2 cut(s) 34, 313
NlaIV GGNNCC 3 cut(s) 679, 786, 1016
NmeAIII GCCGAG 2 cut(s) 382, 636
NmuCI GTSAC 2 cut(s) 715, 880
PaeR7I CTCGAG 1 cut(s) 977
PalAI GGCGCGCC 1 cut(s) 747
PaqCI CACCTGC 1 cut(s) 509
PauI GCGCGC 1 cut(s) 747
PciSI GCTCTTC 2 cut(s) 623, 1086
PdmI GAANNNNTTC 1 cut(s) 986
PfeI GAWTC 1 cut(s) 874
PfoI TCCNGGA 1 cut(s) 468
PleI GAGTC 2 cut(s) 338, 355
PmaCI CACGTG 1 cut(s) 796
PmlI CACGTG 1 cut(s) 796
PpsI GAGTC 2 cut(s) 338, 355
Ppu21I YACGTR 1 cut(s) 796
Psp6I CCWGG 1 cut(s) 695
PspCI CACGTG 1 cut(s) 796
PspGI CCWGG 1 cut(s) 695
PspN4I GGNNCC 3 cut(s) 679, 786, 1016
PspPI GGNCC 2 cut(s) 598, 992
PstI CTGCAG 1 cut(s) 807
PstNI CAGNNNCTG 1 cut(s) 119
PsuI RGATCY 3 cut(s) 235, 838, 973
PteI GCGCGC 1 cut(s) 747
PvuII CAGCTG 1 cut(s) 516
RsaI GTAC 4 cut(s) 308, 497, 938, 1016
RsaNI GTAC 4 cut(s) 307, 496, 937, 1015
RseI CAYNNNNRTG 1 cut(s) 734
SapI GCTCTTC 2 cut(s) 623, 1086
SaqAI TTAA 1 cut(s) 23
Sau3AI GATC 7 cut(s) 121, 235, 472, 838, 949, 973, 999
Sau96I GGNCC 2 cut(s) 598, 992
SchI GAGTC 2 cut(s) 338, 355
ScrFI CCNGG 3 cut(s) 470, 682, 697
SduI GDGCHC 2 cut(s) 801, 858
SfaNI GCATC 2 cut(s) 392, 898
SfcI CTRYAG 1 cut(s) 803
SfiI GGCCNNNNNGGCC 1 cut(s) 35
Sfr274I CTCGAG 1 cut(s) 977
SgsI GGCGCGCC 1 cut(s) 747
SinI GGWCC 1 cut(s) 598
SlaI CTCGAG 1 cut(s) 977
SmiMI CAYNNNNRTG 1 cut(s) 734
SmlI CTYRAG 2 cut(s) 977, 1099
SmoI CTYRAG 2 cut(s) 977, 1099
Sse9I AATT 2 cut(s) 571, 739
StyD4I CCNGG 3 cut(s) 468, 680, 695
StyI CCWWGG 2 cut(s) 30, 630
TaaI ACNGT 1 cut(s) 721
TaiI ACGT 1 cut(s) 798
TaqI TCGA 4 cut(s) 549, 663, 825, 978
TasI AATT 2 cut(s) 571, 739
TatI WGTACW 2 cut(s) 306, 495
TauI GCSGC 8 cut(s) 200, 399, 421, 638, 675, 678, 695, 790
TfiI GAWTC 1 cut(s) 874
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TseFI GTSAC 2 cut(s) 715, 880
TseI GCWGC 7 cut(s) 177, 378, 516, 613, 790, 805, 808
Tsp45I GTSAC 2 cut(s) 715, 880
TspDTI ATGAA 2 cut(s) 716, 752
VpaK11BI GGWCC 1 cut(s) 598
XapI RAATTY 1 cut(s) 739
XhoI CTCGAG 1 cut(s) 977
XmnI GAANNNNTTC 1 cut(s) 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.