AT1G29860
WRKY Family

WRKY transcription factor 71

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012414
Physical Location & Seq
Forward (+)
10454433 .. 10455874
1442 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29860.1

Sequence Viewer

Length: 849 bp
ATGGATGATCATGTTGAGCACAATTATAACACATCTTTAGAAGAAGTACACTTCAAGAGCTTAAGTGATTGCTTACAAAGCTCATTAGTAATGGATTATAACTCACTAGAGAAGGTCTTCAAATTCTCACCTTATAGTTCCCCTTTTCAATCGGTTTCACCGTCAGTAAACAACCCTTACTTAAATCTCACTTCGAATTCTCCGGTGGTCTCATCTTCCTCCAATGAAGGCGAGCCTAAAGAGAACACCAACGATAAGAGTGACCAAATGGAGGATAACGAAGGCGACCTACATGGTGTTGGTGAAAGCTCCAAGCAACTGACAAAACAAGGTAAAAAGAAAGGAGAGAAGAAAGAGAGAGAAGTTAGGGTTGCATTTATGACCAAAAGCGAGATTGATCATCTTGAAGATGGTTATAGATGGCGAAAATATGGACAAAAAGCAGTGAAGAACAGCCCTTATCCAAGGAGTTACTATAGGTGCACAACACAGAAGTGTAACGTGAAGAAACGTGTAGAGAGATCGTTTCAAGATCCGTCGATCGTAATTACAACCTACGAAGGAAAACACAACCATCCGATCCCATCGACGTTGAGAGGAACCGTGGCAGCTGAACATCTACTAGTCCACCGTGGTGGTGGAGGCAGTTTACTCCATAGCTTCCCTCGTCACCATCAAGATTTTCTCATGATGAAACATTCTCCGGCCAATTATCAATCGGTGGGATCTCTGTCGTACGAACATGGCCATGGGACCTCTAGTTACAATTTTAATAATAATCAACCAGTTGTTGACTATGGTCTTCTTCAGGACATTGTTCCTTCAATGTTCTCCAAGAACGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0002252 GO:0002376 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009620 GO:0009636 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010228 GO:0010453 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042542 GO:0042659 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045595 GO:0045893 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070301 GO:0070887 GO:0071236 GO:0080090 GO:0080134 GO:0097159 GO:0097237 GO:0097305 GO:0098542 GO:0140110 GO:1901000 GO:1901002 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRKY

Protein Analysis

282

Amino Acids

31.95

Weight (kDa)

6.95

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 136 - 193 1.3e-27 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012414)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29860 AT4G18170 AT5G46350
fragaria_vesca FvH4_3g06200
malus_domestica MD05G1290300.v1.1 MD10G1266400.v1.1
prunus_persica Prupe.4G075400_v2.0.a1 Prupe.4G075400_v2.0.a1
pyrus_communis pycom05g26710 pycom10g22220
rosa_chinensis RchiOBHm_Chr5g0013131
rosa_laevigata RLG00000031991
rosa_multiflora Rmu_sc0003892.1_g000004
rosa_roxburghii Rroxscaffold_1G00063450
rosa_samantha Rh5AG101600 Rh5BG098000 Rh5CG110100 Rh5DG097200
rosa_wichuraiana Rw5G008880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 27, 99
AclWI GGATC 3 cut(s) 527, 574, 733
AcoI YGGCCR 2 cut(s) 705, 745
AcsI RAATTY 2 cut(s) 122, 196
AcuI CTGAAG 1 cut(s) 791
AfaI GTAC 2 cut(s) 48, 737
AfiI CCNNNNNNNGG 1 cut(s) 271
AflII CTTAAG 1 cut(s) 61
AflIII ACRYGT 1 cut(s) 511
AgsI TTSAA 6 cut(s) 55, 121, 149, 407, 530, 825
AhlI ACTAGT 1 cut(s) 622
AleI CACNNNNGTG 2 cut(s) 493, 633
AluBI AGCT 5 cut(s) 60, 81, 309, 611, 660
AluI AGCT 5 cut(s) 60, 81, 309, 611, 660
Alw21I GWGCWC 2 cut(s) 21, 485
Alw26I GTCTC 1 cut(s) 214
Alw44I GTGCAC 1 cut(s) 481
AlwI GGATC 3 cut(s) 527, 574, 733
AoxI GGCC 2 cut(s) 705, 745
ApaLI GTGCAC 1 cut(s) 481
ApeKI GCWGC 1 cut(s) 608
ApoI RAATTY 2 cut(s) 122, 196
Asp700I GAANNNNTTC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 753
AsuHPI GGTGA 4 cut(s) 120, 150, 314, 662
AsuII TTCGAA 1 cut(s) 194
AvaII GGWCC 1 cut(s) 753
BaeGI GKGCMC 1 cut(s) 485
BalI TGGCCA 1 cut(s) 747
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
BbsI GAAGAC 2 cut(s) 109, 794
Bbv12I GWGCWC 2 cut(s) 21, 485
BbvI GCAGC 1 cut(s) 620
BccI CCATC 5 cut(s) 404, 414, 582, 592, 681
BclI TGATCA 2 cut(s) 7, 397
BcoDI GTCTC 1 cut(s) 214
BcuI ACTAGT 1 cut(s) 622
BfaI CTAG 3 cut(s) 107, 623, 759
BfmI CTRYAG 1 cut(s) 475
BfrI CTTAAG 1 cut(s) 61
BisI GCNGC 1 cut(s) 609
BlsI GCNGC 1 cut(s) 610
Bme18I GGWCC 1 cut(s) 753
BmgT120I GGNCC 1 cut(s) 753
BmiI GGNNCC 2 cut(s) 601, 754
BoxI GACNNNNGTC 1 cut(s) 798
BpiI GAAGAC 2 cut(s) 109, 794
Bpu14I TTCGAA 1 cut(s) 194
BsaI GGTCTC 1 cut(s) 214
BsaJI CCNNGG 4 cut(s) 464, 603, 631, 748
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 785
BseDI CCNNGG 4 cut(s) 464, 603, 631, 748
BseGI GGATG 2 cut(s) 10, 574
BseLI CCNNNNNNNGG 1 cut(s) 271
BseNI ACTGG 1 cut(s) 785
BseSI GKGCMC 1 cut(s) 485
BseXI GCAGC 1 cut(s) 620
Bsh1285I CGRYCG 1 cut(s) 543
BshFI GGCC 2 cut(s) 707, 747
BsiEI CGRYCG 1 cut(s) 543
BsiHKAI GWGCWC 2 cut(s) 21, 485
BsiSI CCGG 2 cut(s) 203, 704
BsiWI CGTACG 1 cut(s) 735
BslFI GGGAC 1 cut(s) 766
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 766
BsnI GGCC 2 cut(s) 707, 747
Bso31I GGTCTC 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 194
Bsp1286I GDGCHC 2 cut(s) 21, 485
Bsp143I GATC 7 cut(s) 7, 397, 521, 532, 540, 579, 725
Bsp19I CCATGG 1 cut(s) 748
BspANI GGCC 2 cut(s) 707, 747
BspHI TCATGA 1 cut(s) 687
BspLI GGNNCC 2 cut(s) 601, 754
BspPI GGATC 3 cut(s) 527, 574, 733
BspT104I TTCGAA 1 cut(s) 194
BspTI CTTAAG 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 785
BssECI CCNNGG 4 cut(s) 464, 603, 631, 748
BssMI GATC 7 cut(s) 7, 397, 521, 532, 540, 579, 725
BssT1I CCWWGG 2 cut(s) 464, 748
Bst4CI ACNGT 3 cut(s) 162, 604, 632
BstAFI CTTAAG 1 cut(s) 61
BstBI TTCGAA 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 233
BstDSI CCRYGG 3 cut(s) 603, 631, 748
BstF5I GGATG 2 cut(s) 10, 574
BstKTI GATC 7 cut(s) 10, 400, 524, 535, 543, 582, 728
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 7 cut(s) 7, 397, 521, 532, 540, 579, 725
BstMCI CGRYCG 1 cut(s) 543
BstMWI GCNNNNNNNGC 1 cut(s) 78
BstPAI GACNNNNGTC 1 cut(s) 798
BstSFI CTRYAG 1 cut(s) 475
BstSLI GKGCMC 1 cut(s) 485
BstV1I GCAGC 1 cut(s) 620
BstV2I GAAGAC 2 cut(s) 109, 794
BstX2I RGATCY 2 cut(s) 532, 725
BstXI CCANNNNNNTGG 1 cut(s) 635
BstYI RGATCY 2 cut(s) 532, 725
BsuRI GGCC 2 cut(s) 707, 747
BtgI CCRYGG 3 cut(s) 603, 631, 748
BtsCI GGATG 2 cut(s) 10, 574
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 1 cut(s) 233
CciI TCATGA 1 cut(s) 687
Cfr13I GGNCC 1 cut(s) 753
Csp6I GTAC 2 cut(s) 47, 736
CviAII CATG 5 cut(s) 11, 293, 688, 743, 749
CviJI RGCY 9 cut(s) 60, 81, 235, 309, 456, 611, 660, 707, 747
CviKI_1 RGCY 9 cut(s) 60, 81, 235, 309, 456, 611, 660, 707, 747
CviQI GTAC 2 cut(s) 47, 736
DpnI GATC 7 cut(s) 9, 399, 523, 534, 542, 581, 727
DpnII GATC 7 cut(s) 7, 397, 521, 532, 540, 579, 725
EaeI YGGCCR 2 cut(s) 705, 745
Eco130I CCWWGG 2 cut(s) 464, 748
Eco31I GGTCTC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 753
Eco57I CTGAAG 1 cut(s) 791
EcoO109I RGGNCCY 1 cut(s) 753
EcoRI GAATTC 1 cut(s) 196
EcoT14I CCWWGG 2 cut(s) 464, 748
ErhI CCWWGG 2 cut(s) 464, 748
FaeI CATG 5 cut(s) 14, 296, 691, 746, 752
FaqI GGGAC 1 cut(s) 766
FatI CATG 5 cut(s) 10, 292, 687, 742, 748
FbaI TGATCA 2 cut(s) 7, 397
Fnu4HI GCNGC 1 cut(s) 609
FokI GGATG 2 cut(s) 17, 561
Fsp4HI GCNGC 1 cut(s) 609
FspBI CTAG 3 cut(s) 107, 623, 759
GluI GCNGC 1 cut(s) 609
HaeIII GGCC 2 cut(s) 707, 747
HapII CCGG 2 cut(s) 203, 704
Hin1II CATG 5 cut(s) 14, 296, 691, 746, 752
HincII GTYRAC 1 cut(s) 793
HindII GTYRAC 1 cut(s) 793
HinfI GANTC 1 cut(s) 842
HpaII CCGG 2 cut(s) 203, 704
HphI GGTGA 4 cut(s) 120, 150, 314, 662
Hpy166II GTNNAC 6 cut(s) 49, 169, 483, 628, 650, 793
Hpy188I TCNGA 1 cut(s) 579
Hpy188III TCNNGA 7 cut(s) 55, 404, 530, 677, 688, 809, 846
Hpy8I GTNNAC 6 cut(s) 49, 169, 483, 628, 650, 793
Hpy99I CGWCG 2 cut(s) 541, 592
HpyAV CCTTC 5 cut(s) 106, 221, 275, 554, 831
HpyCH4III ACNGT 3 cut(s) 162, 604, 632
HpyCH4IV ACGT 3 cut(s) 501, 511, 590
HpyCH4V TGCA 2 cut(s) 374, 483
HpyF10VI GCNNNNNNNGC 1 cut(s) 78
HpySE526I ACGT 3 cut(s) 501, 511, 590
Hsp92II CATG 5 cut(s) 14, 296, 691, 746, 752
Ksp22I TGATCA 2 cut(s) 7, 397
Kzo9I GATC 7 cut(s) 7, 397, 521, 532, 540, 579, 725
LmnI GCTCC 1 cut(s) 314
LpnPI CCDG 4 cut(s) 216, 717, 794, 798
Lsp1109I GCAGC 1 cut(s) 620
MaeI CTAG 3 cut(s) 107, 623, 759
MaeII ACGT 3 cut(s) 501, 511, 590
MaeIII GTNAC 5 cut(s) 260, 470, 497, 668, 761
MalI GATC 7 cut(s) 9, 399, 523, 534, 542, 581, 727
MboI GATC 7 cut(s) 7, 397, 521, 532, 540, 579, 725
MboII GAAGA 9 cut(s) 53, 109, 207, 361, 419, 460, 517, 794, 797
MflI RGATCY 2 cut(s) 532, 725
MhlI GDGCHC 2 cut(s) 21, 485
MlsI TGGCCA 1 cut(s) 747
MluCI AATT 6 cut(s) 22, 122, 196, 546, 709, 766
MluNI TGGCCA 1 cut(s) 747
MnlI CCTC 6 cut(s) 229, 265, 590, 635, 675, 766
Mox20I TGGCCA 1 cut(s) 747
MroXI GAANNNNTTC 1 cut(s) 116
MscI TGGCCA 1 cut(s) 747
MseI TTAA 3 cut(s) 62, 182, 771
MslI CAYNNNNRTG 3 cut(s) 493, 633, 747
Msp20I TGGCCA 1 cut(s) 747
MspA1I CMGCKG 1 cut(s) 611
MspCI CTTAAG 1 cut(s) 61
MspI CCGG 2 cut(s) 203, 704
MwoI GCNNNNNNNGC 1 cut(s) 78
NcoI CCATGG 1 cut(s) 748
NdeII GATC 7 cut(s) 7, 397, 521, 532, 540, 579, 725
NlaIII CATG 5 cut(s) 14, 296, 691, 746, 752
NlaIV GGNNCC 2 cut(s) 601, 754
NmuCI GTSAC 2 cut(s) 260, 668
NspV TTCGAA 1 cut(s) 194
OliI CACNNNNGTG 2 cut(s) 493, 633
PagI TCATGA 1 cut(s) 687
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 116
Pfl23II CGTACG 1 cut(s) 735
PkrI GCNGC 1 cut(s) 610
Ple19I CGATCG 1 cut(s) 543
PpuMI RGGWCCY 1 cut(s) 753
PshAI GACNNNNGTC 1 cut(s) 798
PsiI TTATAA 2 cut(s) 27, 99
Psp5II RGGWCCY 1 cut(s) 753
PspLI CGTACG 1 cut(s) 735
PspN4I GGNNCC 2 cut(s) 601, 754
PspPI GGNCC 1 cut(s) 753
PspPPI RGGWCCY 1 cut(s) 753
PsuI RGATCY 2 cut(s) 532, 725
PvuI CGATCG 1 cut(s) 543
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 2 cut(s) 48, 737
RsaNI GTAC 2 cut(s) 47, 736
RseI CAYNNNNRTG 3 cut(s) 493, 633, 747
SaqAI TTAA 3 cut(s) 62, 182, 771
SatI GCNGC 1 cut(s) 609
Sau3AI GATC 7 cut(s) 7, 397, 521, 532, 540, 579, 725
Sau96I GGNCC 1 cut(s) 753
SduI GDGCHC 2 cut(s) 21, 485
SfcI CTRYAG 1 cut(s) 475
SfuI TTCGAA 1 cut(s) 194
SinI GGWCC 1 cut(s) 753
SmiMI CAYNNNNRTG 3 cut(s) 493, 633, 747
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
SpeI ACTAGT 1 cut(s) 622
Sse9I AATT 6 cut(s) 22, 122, 196, 546, 709, 766
SspMI CTAG 3 cut(s) 107, 623, 759
StyI CCWWGG 2 cut(s) 464, 748
TaaI ACNGT 3 cut(s) 162, 604, 632
TaiI ACGT 3 cut(s) 504, 514, 593
TaqI TCGA 3 cut(s) 194, 539, 587
TasI AATT 6 cut(s) 22, 122, 196, 546, 709, 766
TatI WGTACW 1 cut(s) 46
Tru1I TTAA 3 cut(s) 62, 182, 771
Tru9I TTAA 3 cut(s) 62, 182, 771
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 2 cut(s) 260, 668
TseI GCWGC 1 cut(s) 608
Tsp45I GTSAC 2 cut(s) 260, 668
TspDTI ATGAA 2 cut(s) 240, 707
TspGWI ACGGA 1 cut(s) 525
TspRI CASTG 1 cut(s) 450
Vha464I CTTAAG 1 cut(s) 61
VneI GTGCAC 1 cut(s) 481
VpaK11BI GGWCC 1 cut(s) 753
XapI RAATTY 2 cut(s) 122, 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 635
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 3 cut(s) 107, 623, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.